EsuBft94_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft94_25a-0001
Unique Name	EsuBft94_25a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:114879..118559 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft94_25
Protein domains	G3DSA
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR020846
Protein domains	IPR011701
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	284
Hectar predicted targeting category	signal anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0055085
GO	0016021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft94_25a	EsuBft94_25a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 114879..118559 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_25a-0001-exon	EsuBft94_25a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 114879..115340 +
EsuBft94_25a-0001-exon	agat-exon-104189	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 115697..115849 +
EsuBft94_25a-0001-exon	agat-exon-104190	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 116335..118559 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_25a-0001-cds	EsuBft94_25a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 114879..115340 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_25a-0001-exon	agat-three_prime_utr-23406	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 116932..118559 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_25a-0001	EsuBft94_25	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 114879..116931 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:114879..118559+
coding sequence from alignment at Scaffold_94:114879..118559+

spliced messenger RNA

>EsuBft94_25a-0001 ID=EsuBft94_25a-0001|Name=EsuBft94_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2840bp|location=Sequence derived from alignment at Scaffold_94:114879..118559+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGACGACGGGATCTACAGGTCGGCACCGTGTTCGTTGCCAAGGG
TGCGGGGACCGGCGTCGGGGCACTCATGTCGCCGAAGCTCTACCTGAGCG
TTCGCGGGAACACGGTGCTGTCCGTTGGGCTGGTTCTCCTTTCGGCGATC
CTCTCGTACTTCCCGTTCCTGTCCAGCGTTTTCACCCTTCACCTGGCGTT
CTTCATCCAGGGGCTTGTCGTGAATATTCTCATGACTGGTTGTCAGATCA
TGACTCGCAAGGTTCACGGCGACAAGTGCAACCTATGGACTGGTGCCAAT
GTGGTGTCGCTGGGGCTTTCGAGTGCCTTATTTCCGGTAGTTGCCTACCT
GGATGATTCGCTCTTCGACCTGTACGCCATCCTGTCCGGCATGAGCATTG
CAGTTGCCGTCATCCTCGGCGTCGTCATTCCAGCTCCGGAGAGCTTCGAA
GGACTAATCGAGGAGACGCCCGAGTCGTTCGTGGTGGACCCAGCAGCAGG
TGGCATGGAGCCGCCGGAAAAGAGCACGTGGACGAGGAAGTGCTCTCTGT
TCTACAGCAAGTACAGGGTCGAGTTTAACATAGGCGCCATGGTGTTGTGG
CTGATAGGTGGCACGTCCGCTACGAGCTCGTATCTAGGTACGTATGTAGA
GTCTACCGGAGTAATTCCAACCTCTCAAGAATCCCTCCTCCAAGTCGACT
TGTTTGCGGCTTCGGTGGTCGGTATTTTGTTGGGCCTGCTGGCCCAGCTG
TATTGTACACTTTCGAGCCTATATCGCTGGTCGATGGCGGCGTTCCTGTT
GGGAGGAGCAGGGGTGGCAGCGATACTACTGTTCCAAGACTCGCCGACGG
TGTTTTGGGTCTGCATCGCCAGTTACGGTTTCGCATGGGGCCCGACGGTA
AATTTTTGCTACGAGCTTAATAACCACATAAACCCGCCTTCGGAATCGGG
CATGTCGGTAATCACGTTCGGGCTTACCTTCGGAATGGCCGCGTTCCCGT
ATGCCACCTCGTTGGTGTTGGACTATACCGGGGTGGCGCAGTGGTTGATG
GTGATCGTATTGGCGTCAATGCTCGTGCCCGGCCTGCTGCTGCTGAACAT
CATGCGAATAGTAGAATCGAAAGGGGTACAGAAGAAGTGTTTCCTTGTGC
AGGAGGATCTGTCGTCAGCCTCGCACCCTGACATTGGGGAAACAACCCGT
CTGCTGCAGTGACGCATGAGTAGTTGAGAAAGAGAGGGAAAGAAACGAAG
GGTTATTCGTAAACATTGTTCCTACAACAGACCTGGAAAAGGAAACGGCC
GAGATTGTGGTAAACAGAACATGATCTGGGAGACAATATCGATGAGAATC
TAGAAAAACTAGTAGAGCCTGGTGTGTCGTGTAGGAAGTTCCATTTTGTG
CTACGTCCGATTGTACCCCCTGTTGGTGAGTGCACCATAGCTGGTTTCTG
CTGGAGACGATGTCGGAAAGAACCGCCAAGTTTTTTTAAGCAGCTGCAAC
AGTAGCTGCGACGCTAGCCAAGAACAAATGAACGTGTTTCAAACGACCAC
AAAATAGGCAATGGGTGGTTGAGAACAATAGTACAAGTCGGTGGGTACAC
CCACCGGAATGTTGCACAAAAATTCTGGCACCCTGTAGAGGCCTCGTGTG
CCGCGGTGACAATGTAACGTGCTCGAAAGTTCGTAATTCTTGGACGTTCG
TGCTGAGCATGGGCGTGGCTATCTATGTTGTCCAGGCGCGGGAATGGGAT
TTAGAGTGGTTCGGCACTATCACGAATGGTCTGCGTGAAGCAATTTTTCC
AGTGCCTTCACAGTTGTCCGAGAAAGGAGTGCCTTTTTCTGTTTCCCTTT
CGTGTTCTAGGGCATTTGGTTGTTCTGGATGGGTTCGTGTCGTAGACAAA
TGCATGGTTGTGATCCCTGCTATTTTACGCTCGTGAAGCATGGCCTTAGC
CCACCGCTGTACGTATGCTCCAGTTCCAGGTGGGGATGGGGCTCATTTCT
CCGGTGTCGTTTGTGGTAATAGTGCTGGTCCCGTCAGGAGCGGAGGATTC
TTCTTGAATATTACATCGTTTCGTCCTGGTCTTGGTTTTCGTGGCCGGGT
TGTTATTCGCCATGTCATGGCGAGAGGTCTTGATCGTAGTAGAAGTCAAA
GTGGATCCCTTGTATTCTACGGAGTTGGACGGCTCGTTAAGCTTGGCTGT
ATCCCGCGCGTAGTTGTGAATAGGTGTCGGTTAGGTATAGGTATTGTAGG
TTTTCCTCGTATGTTATGTAGGTGGGTGCCAGTTCCTTGCGTGTTGTGTA
GGCGGGGATTGCCGAGCTGGTCAAGCGTGGCTTGACTGACGAGAATAAGG
GGAGAGTGAGCTTGAGGGGGAGCCACCGTGGACCCCGTCTCAAACTCAGG
GCGCTGACCGTCTTTCTCAGAGATTGGAACCCACCTGGTCAAGGTATAGA
GGACGTATAATAGTATGTGTTTTGCCGAGGATCCCGTGCGGCCTTGCTCG
TTTGATGTCCGTTCGGAAAGTGTGTAAGAAACATGTTATTTGTTCATCAT
CCACAGGGTGCGTTATTCTTCTTGGTCATTCTTGTACGTACGCGCTATTC
CTGCGTGTAATAACACACACATCCCCCTCGCAGTGCCCCCGAAGTGATGT
TGTGTCGCAAGAAGTGTTTGGTGTCACGTTAGTGGTTGCCAGTTTCGTTG
TTGCTCCGGTAGACTGGAGCATTGGGGGATCTGTCTATCTTCCCTTTTGT
TTCCGGTCGTTGTCTCCCCCTCTCTTCCTCTCGTTCTTGTTGTCTTGTCT
TTCGTTCTTTCATCTCTTTTTTGACCGGGGTCGATCGCCT

protein sequence of EsuBft94_25a-0001

>EsuBft94_25 ID=EsuBft94_25|Name=EsuBft94_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=403bp
MMRRRDLQVGTVFVAKGAGTGVGALMSPKLYLSVRGNTVLSVGLVLLSAI
LSYFPFLSSVFTLHLAFFIQGLVVNILMTGCQIMTRKVHGDKCNLWTGAN
VVSLGLSSALFPVVAYLDDSLFDLYAILSGMSIAVAVILGVVIPAPESFE
GLIEETPESFVVDPAAGGMEPPEKSTWTRKCSLFYSKYRVEFNIGAMVLW
LIGGTSATSSYLGTYVESTGVIPTSQESLLQVDLFAASVVGILLGLLAQL
YCTLSSLYRWSMAAFLLGGAGVAAILLFQDSPTVFWVCIASYGFAWGPTV
NFCYELNNHINPPSESGMSVITFGLTFGMAAFPYATSLVLDYTGVAQWLM
VIVLASMLVPGLLLLNIMRIVESKGVQKKCFLVQEDLSSASHPDIGETTR
LLQ

mRNA from alignment at Scaffold_94:114879..118559+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft94_25a-0001 ID=EsuBft94_25a-0001|Name=EsuBft94_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3681bp|location=Sequence derived from alignment at Scaffold_94:114879..118559+ (Ectocarpus subulatus male Bft15b)
ATGATGCGACGACGGGATCTACAGGTCGGCACCGTGTTCGTTGCCAAGGG
TGCGGGGACCGGCGTCGGGGCACTCATGTCGCCGAAGCTCTACCTGAGCG
TTCGCGGGAACACGGTGCTGTCCGTTGGGCTGGTTCTCCTTTCGGCGATC
CTCTCGTACTTCCCGTTCCTGTCCAGCGTTTTCACCCTTCACCTGGCGTT
CTTCATCCAGGGGCTTGTCGTGAATATTCTCATGACTGGTTGTCAGATCA
TGACTCGCAAGGTTCACGGCGACAAGTGCAACCTATGGACTGGTGCCAAT
GTGGTGTCGCTGGGGCTTTCGAGTGCCTTATTTCCGGTAGTTGCCTACCT
GGATGATTCGCTCTTCGACCTGTACGCCATCCTGTCCGGCATGAGCATTG
CAGTTGCCGTCATCCTCGGCGTCGTCATTCCAGCTCCGGAGAGCTTCGAA
GGACTAATCGAGGTGTGCGAGACGCGTGATACTTGGGGTTGGCTGCGGGG
GGGCTTAGATCGCCCGGATGTGTGCAGTTGTTGCCACATACCACTCGCCT
GTCTCGGTTGCCTGAACGTCGACAAGGGGAAAGGGCGAGCCCGCAGAGAC
CCTAGGTGCTTACAGAGGTCAACTACCCTGCTTTGGGTGCAGTGGGTAGG
AACGCTGGGCATGCGTGATGTTCCCTTGGGCGAGAGCTCACACGGTGGTA
TGCAGGGGTGAGAGCACGCATGGGTCTTGGTTGAGGGATGGTACGATGAG
GTGTTCGCTACATTTGGGTTCTAATTGCGTGACATATCCCCCCACGTGCG
TTTCGCCCTTGAGAGCAGGAGACGCCCGAGTCGTTCGTGGTGGACCCAGC
AGCAGGTGGCATGGAGCCGCCGGAAAAGAGCACGTGGACGAGGAAGTGCT
CTCTGTTCTACAGCAAGTACAGGGTCGAGTTTAACATAGGCGCCATGGTG
TTGTGGCTGATAGGTGGCACGGTGAGCGGAACGCAGAGCTACTGCGGTAT
TTTCAGATGCGCGCGTAGGGGATTTGCTGCCCATCTCGACCCTCAGGCAA
AGGGTCAGTGCGCACTACTCGGTGTATTTCGGCCAACAAGCCGGGCGATG
TCTTGGTTGTTGTGAAGCGTGCCGGGTACAAACAAGCGTGGCACGGTAAC
GTGGTTGGCACCGGTGCATCCTTGGGGTGGTGAACCACACTATCATGAAG
CCAAGTGTCCTACTTATGGATAAACCACCATATGCATGTGTTCGGACAGA
ATGATGACAAAAGAGGATATCAGCCTTCACCTCCAAAGAAACATTTGGCC
AAAGGACACCTCACGTGTTTTCTGTCAAGGCACTGTTGTCCCATACTATG
TATGAGTAGTCTACGAGTCCTTCGCGTAAAACAACCTTCCCGCCCTCCCC
GTCCCCCCTACCCTTCCGCCTGCTCCCGCGCTGGTTCCGCTACCAATCAA
TTTCAGTCCGCTACGAGCTCGTATCTAGGTACGTATGTAGAGTCTACCGG
AGTAATTCCAACCTCTCAAGAATCCCTCCTCCAAGTCGACTTGTTTGCGG
CTTCGGTGGTCGGTATTTTGTTGGGCCTGCTGGCCCAGCTGTATTGTACA
CTTTCGAGCCTATATCGCTGGTCGATGGCGGCGTTCCTGTTGGGAGGAGC
AGGGGTGGCAGCGATACTACTGTTCCAAGACTCGCCGACGGTGTTTTGGG
TCTGCATCGCCAGTTACGGTTTCGCATGGGGCCCGACGGTAAATTTTTGC
TACGAGCTTAATAACCACATAAACCCGCCTTCGGAATCGGGCATGTCGGT
AATCACGTTCGGGCTTACCTTCGGAATGGCCGCGTTCCCGTATGCCACCT
CGTTGGTGTTGGACTATACCGGGGTGGCGCAGTGGTTGATGGTGATCGTA
TTGGCGTCAATGCTCGTGCCCGGCCTGCTGCTGCTGAACATCATGCGAAT
AGTAGAATCGAAAGGGGTACAGAAGAAGTGTTTCCTTGTGCAGGAGGATC
TGTCGTCAGCCTCGCACCCTGACATTGGGGAAACAACCCGTCTGCTGCAG
TGACGCATGAGTAGTTGAGAAAGAGAGGGAAAGAAACGAAGGGTTATTCG
TAAACATTGTTCCTACAACAGACCTGGAAAAGGAAACGGCCGAGATTGTG
GTAAACAGAACATGATCTGGGAGACAATATCGATGAGAATCTAGAAAAAC
TAGTAGAGCCTGGTGTGTCGTGTAGGAAGTTCCATTTTGTGCTACGTCCG
ATTGTACCCCCTGTTGGTGAGTGCACCATAGCTGGTTTCTGCTGGAGACG
ATGTCGGAAAGAACCGCCAAGTTTTTTTAAGCAGCTGCAACAGTAGCTGC
GACGCTAGCCAAGAACAAATGAACGTGTTTCAAACGACCACAAAATAGGC
AATGGGTGGTTGAGAACAATAGTACAAGTCGGTGGGTACACCCACCGGAA
TGTTGCACAAAAATTCTGGCACCCTGTAGAGGCCTCGTGTGCCGCGGTGA
CAATGTAACGTGCTCGAAAGTTCGTAATTCTTGGACGTTCGTGCTGAGCA
TGGGCGTGGCTATCTATGTTGTCCAGGCGCGGGAATGGGATTTAGAGTGG
TTCGGCACTATCACGAATGGTCTGCGTGAAGCAATTTTTCCAGTGCCTTC
ACAGTTGTCCGAGAAAGGAGTGCCTTTTTCTGTTTCCCTTTCGTGTTCTA
GGGCATTTGGTTGTTCTGGATGGGTTCGTGTCGTAGACAAATGCATGGTT
GTGATCCCTGCTATTTTACGCTCGTGAAGCATGGCCTTAGCCCACCGCTG
TACGTATGCTCCAGTTCCAGGTGGGGATGGGGCTCATTTCTCCGGTGTCG
TTTGTGGTAATAGTGCTGGTCCCGTCAGGAGCGGAGGATTCTTCTTGAAT
ATTACATCGTTTCGTCCTGGTCTTGGTTTTCGTGGCCGGGTTGTTATTCG
CCATGTCATGGCGAGAGGTCTTGATCGTAGTAGAAGTCAAAGTGGATCCC
TTGTATTCTACGGAGTTGGACGGCTCGTTAAGCTTGGCTGTATCCCGCGC
GTAGTTGTGAATAGGTGTCGGTTAGGTATAGGTATTGTAGGTTTTCCTCG
TATGTTATGTAGGTGGGTGCCAGTTCCTTGCGTGTTGTGTAGGCGGGGAT
TGCCGAGCTGGTCAAGCGTGGCTTGACTGACGAGAATAAGGGGAGAGTGA
GCTTGAGGGGGAGCCACCGTGGACCCCGTCTCAAACTCAGGGCGCTGACC
GTCTTTCTCAGAGATTGGAACCCACCTGGTCAAGGTATAGAGGACGTATA
ATAGTATGTGTTTTGCCGAGGATCCCGTGCGGCCTTGCTCGTTTGATGTC
CGTTCGGAAAGTGTGTAAGAAACATGTTATTTGTTCATCATCCACAGGGT
GCGTTATTCTTCTTGGTCATTCTTGTACGTACGCGCTATTCCTGCGTGTA
ATAACACACACATCCCCCTCGCAGTGCCCCCGAAGTGATGTTGTGTCGCA
AGAAGTGTTTGGTGTCACGTTAGTGGTTGCCAGTTTCGTTGTTGCTCCGG
TAGACTGGAGCATTGGGGGATCTGTCTATCTTCCCTTTTGTTTCCGGTCG
TTGTCTCCCCCTCTCTTCCTCTCGTTCTTGTTGTCTTGTCTTTCGTTCTT
TCATCTCTTTTTTGACCGGGGTCGATCGCCT

Coding sequence (CDS) from alignment at Scaffold_94:114879..118559+

>EsuBft94_25a-0001 ID=EsuBft94_25a-0001|Name=EsuBft94_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1212bp|location=Sequence derived from alignment at Scaffold_94:114879..118559+ (Ectocarpus subulatus male Bft15b)
ATGATGCGACGACGGGATCTACAGGTCGGCACCGTGTTCGTTGCCAAGGG
TGCGGGGACCGGCGTCGGGGCACTCATGTCGCCGAAGCTCTACCTGAGCG
TTCGCGGGAACACGGTGCTGTCCGTTGGGCTGGTTCTCCTTTCGGCGATC
CTCTCGTACTTCCCGTTCCTGTCCAGCGTTTTCACCCTTCACCTGGCGTT
CTTCATCCAGGGGCTTGTCGTGAATATTCTCATGACTGGTTGTCAGATCA
TGACTCGCAAGGTTCACGGCGACAAGTGCAACCTATGGACTGGTGCCAAT
GTGGTGTCGCTGGGGCTTTCGAGTGCCTTATTTCCGGTAGTTGCCTACCT
GGATGATTCGCTCTTCGACCTGTACGCCATCCTGTCCGGCATGAGCATTG
CAGTTGCCGTCATCCTCGGCGTCGTCATTCCAGCTCCGGAGAGCTTCGAA
GGACTAATCGAGGAGACGCCCGAGTCGTTCGTGGTGGACCCAGCAGCAGG
TGGCATGGAGCCGCCGGAAAAGAGCACGTGGACGAGGAAGTGCTCTCTGT
TCTACAGCAAGTACAGGGTCGAGTTTAACATAGGCGCCATGGTGTTGTGG
CTGATAGGTGGCACGTCCGCTACGAGCTCGTATCTAGGTACGTATGTAGA
GTCTACCGGAGTAATTCCAACCTCTCAAGAATCCCTCCTCCAAGTCGACT
TGTTTGCGGCTTCGGTGGTCGGTATTTTGTTGGGCCTGCTGGCCCAGCTG
TATTGTACACTTTCGAGCCTATATCGCTGGTCGATGGCGGCGTTCCTGTT
GGGAGGAGCAGGGGTGGCAGCGATACTACTGTTCCAAGACTCGCCGACGG
TGTTTTGGGTCTGCATCGCCAGTTACGGTTTCGCATGGGGCCCGACGGTA
AATTTTTGCTACGAGCTTAATAACCACATAAACCCGCCTTCGGAATCGGG
CATGTCGGTAATCACGTTCGGGCTTACCTTCGGAATGGCCGCGTTCCCGT
ATGCCACCTCGTTGGTGTTGGACTATACCGGGGTGGCGCAGTGGTTGATG
GTGATCGTATTGGCGTCAATGCTCGTGCCCGGCCTGCTGCTGCTGAACAT
CATGCGAATAGTAGAATCGAAAGGGGTACAGAAGAAGTGTTTCCTTGTGC
AGGAGGATCTGTCGTCAGCCTCGCACCCTGACATTGGGGAAACAACCCGT
CTGCTGCAGTGA