EsuBft94_26a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft94_26a-0001
Unique Name	EsuBft94_26a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:107454..108630 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft94_26
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	117
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft94_26a	EsuBft94_26a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 107454..108630 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_26a-0001-exon	EsuBft94_26a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 107454..108630 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_26a-0001-exon	agat-five_prime_utr-15228	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 107454..107567 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_26a-0001-cds	EsuBft94_26a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 107568..107849 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_26a-0001-exon	agat-three_prime_utr-23407	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 107850..108630 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_26a-0001	EsuBft94_26	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 107568..107849 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:107454..108630+
coding sequence from alignment at Scaffold_94:107454..108630+

spliced messenger RNA

>EsuBft94_26a-0001 ID=EsuBft94_26a-0001|Name=EsuBft94_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1177bp|location=Sequence derived from alignment at Scaffold_94:107454..108630+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTCGTTTGAAGTAGATCTCGCTCCTGCAAGTAGATCTCGCTCCTCAACC
CACCAAGTCTCTCGTGGTTAATCTCGGCGCTCATGCCTGAACGGTAGACT
GGCATCGGCAGAATATGAGCGATGAAGTAGAGAACACCGCGGTCCTCGCG
CAAGGCGCGTGCTACTTCACCACCAGCCATCTTAGGACGGCGCTCATGCT
GCGTGTACCACCACTCTCTCTGTCGTTCCCCATCTCCTGTGGCAAGCCCG
CAGTTCCTTGTCTCTCCGACGTACTCACGAGAGGTCGAAGTCAAGGAAGT
ATTATCGAGGTCCCACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTA
CGAACTTCTTCCTACACAACAATGTGTCATATATCTCCGGCCTTGATCGA
GACATAACCACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTACGAAC
TTCTTCCTACACAACAATGTGTCATATATCTCCGGCCTTGATCGAGACAT
AACCACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTACGAACTTCTT
CCTACACAACAATGTGTCATATATCTCCGGCCTTGATCGAGACATAACCA
CGGCATCCACTGCTTGCTGCTGCTGCATTGCTGTGTACGAACGACCCTCT
GCGTACACAACAACGTGCCATGCATCTCCGGTCTTGATGTGTCAATACAT
GTATTCCAGACGAAAGCGACGCCCTTATGCTTCTGTGCCTGATGCTTCCG
TGAACATATCTGAGCTGCGTCATGTATTTGTGTGCATCTCAAGTGATCAC
GTGAGGTATTGAGAGGTATTCATCCACCGCCGCCCGCCTGGCCCTCTCTC
TCCTCCCTCTCCGATACGAAACGAGAACCGAGAGAGTTCCGCCGTCGGCG
GTGGGTTGCAGGAGGAGCCTTGCAGGAGAGAGATCCACTTCAAACGAGAG
TTCCGCCGCGTTAGCCGTGTTAGGTCAGCCTCCGCCCACCGTCGGAAGCG
TCGGAACTCGAGTGCGGGGTGTTGGTGACGTGTGTTCGTGAGCGTGGTCT
GCTGGTGGTCTGTTGGTCGAATAGCCCATCCACTTTCGGGTAGGCGAGAG
TATGATCGGGTGCACCCGGTGGGAATAGGGTCAGGGCCGGGTAGGGGCTG
GCGTCGGCCAATCAGATGGCACCAGGA

protein sequence of EsuBft94_26a-0001

>EsuBft94_26 ID=EsuBft94_26|Name=EsuBft94_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MSDEVENTAVLAQGACYFTTSHLRTALMLRVPPLSLSFPISCGKPAVPCL
SDVLTRGRSQGSIIEVPRHPLLAAAALLYELLPTQQCVIYLRP

mRNA from alignment at Scaffold_94:107454..108630+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft94_26a-0001 ID=EsuBft94_26a-0001|Name=EsuBft94_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1177bp|location=Sequence derived from alignment at Scaffold_94:107454..108630+ (Ectocarpus subulatus male Bft15b)
TCTCGTTTGAAGTAGATCTCGCTCCTGCAAGTAGATCTCGCTCCTCAACC
CACCAAGTCTCTCGTGGTTAATCTCGGCGCTCATGCCTGAACGGTAGACT
GGCATCGGCAGAATATGAGCGATGAAGTAGAGAACACCGCGGTCCTCGCG
CAAGGCGCGTGCTACTTCACCACCAGCCATCTTAGGACGGCGCTCATGCT
GCGTGTACCACCACTCTCTCTGTCGTTCCCCATCTCCTGTGGCAAGCCCG
CAGTTCCTTGTCTCTCCGACGTACTCACGAGAGGTCGAAGTCAAGGAAGT
ATTATCGAGGTCCCACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTA
CGAACTTCTTCCTACACAACAATGTGTCATATATCTCCGGCCTTGATCGA
GACATAACCACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTACGAAC
TTCTTCCTACACAACAATGTGTCATATATCTCCGGCCTTGATCGAGACAT
AACCACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTACGAACTTCTT
CCTACACAACAATGTGTCATATATCTCCGGCCTTGATCGAGACATAACCA
CGGCATCCACTGCTTGCTGCTGCTGCATTGCTGTGTACGAACGACCCTCT
GCGTACACAACAACGTGCCATGCATCTCCGGTCTTGATGTGTCAATACAT
GTATTCCAGACGAAAGCGACGCCCTTATGCTTCTGTGCCTGATGCTTCCG
TGAACATATCTGAGCTGCGTCATGTATTTGTGTGCATCTCAAGTGATCAC
GTGAGGTATTGAGAGGTATTCATCCACCGCCGCCCGCCTGGCCCTCTCTC
TCCTCCCTCTCCGATACGAAACGAGAACCGAGAGAGTTCCGCCGTCGGCG
GTGGGTTGCAGGAGGAGCCTTGCAGGAGAGAGATCCACTTCAAACGAGAG
TTCCGCCGCGTTAGCCGTGTTAGGTCAGCCTCCGCCCACCGTCGGAAGCG
TCGGAACTCGAGTGCGGGGTGTTGGTGACGTGTGTTCGTGAGCGTGGTCT
GCTGGTGGTCTGTTGGTCGAATAGCCCATCCACTTTCGGGTAGGCGAGAG
TATGATCGGGTGCACCCGGTGGGAATAGGGTCAGGGCCGGGTAGGGGCTG
GCGTCGGCCAATCAGATGGCACCAGGA

Coding sequence (CDS) from alignment at Scaffold_94:107454..108630+

>EsuBft94_26a-0001 ID=EsuBft94_26a-0001|Name=EsuBft94_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_94:107454..108630+ (Ectocarpus subulatus male Bft15b)
ATGAGCGATGAAGTAGAGAACACCGCGGTCCTCGCGCAAGGCGCGTGCTA
CTTCACCACCAGCCATCTTAGGACGGCGCTCATGCTGCGTGTACCACCAC
TCTCTCTGTCGTTCCCCATCTCCTGTGGCAAGCCCGCAGTTCCTTGTCTC
TCCGACGTACTCACGAGAGGTCGAAGTCAAGGAAGTATTATCGAGGTCCC
ACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTACGAACTTCTTCCTA
CACAACAATGTGTCATATATCTCCGGCCTTGA