EsuBft1078_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1078_4a-0001
Unique Name	EsuBft1078_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_91	contig	Scaffold_91:85223..90328 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1078_4
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	124
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1078_4a	EsuBft1078_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_91 85223..90328 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1078_4a-0001	EsuBft1078_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_91 88094..89907 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1078_4a-0001-exon	agat-exon-106970	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 85223..85432 +
EsuBft1078_4a-0001-exon	agat-exon-106969	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 88025..88441 +
EsuBft1078_4a-0001-exon	EsuBft1078_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 89707..90328 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1078_4a-0001-exon	agat-five_prime_utr-460	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_91 85223..85432 +
EsuBft1078_4a-0001-exon	agat-five_prime_utr-461	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_91 88025..88093 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1078_4a-0001-cds	EsuBft1078_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_91 88094..88441 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1078_4a-0001-exon	agat-three_prime_utr-731	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_91 89908..90328 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_91:85223..90328+
coding sequence from alignment at Scaffold_91:85223..90328+

spliced messenger RNA

>EsuBft1078_4a-0001 ID=EsuBft1078_4a-0001|Name=EsuBft1078_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1249bp|location=Sequence derived from alignment at Scaffold_91:85223..90328+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATTTGAATGTGTAGGAAAGTACAAACGATAGTGCGGGCTAATGCC
CAGAGGAAAGTGCGGGAGATGCAACTCCCCACGGAAGGATAAAACAGGGG
ACAGGATCTAGCAGCGCTTGCTTAAGCAGCTGATCCTGGCCCCATCCTAG
TCAGTCCTCTACCTTCCCTTGGCAACAGCTACTGCAGTGTTCCAAACGAG
TTAATAACAAGACGCCGCTGATGTGGCAAACGGGTCTCAGCCCGACCTCC
AAGACGTGGTGAGCTGCCTCCTCGTGGCGATGCGGGCGGCCACCATGAAC
GCAACGTCTCCGGTGGTGTGGCCCGGCTGCACCGTGGCGGCTCCAGCATC
TTCGGCGTTCCAGCAGCCCAAGGCTGGCCGCATCAAGGCCAAGCCGGCCC
AGCGCACCGTGCGAGAGAGTAGTTCGGGCGAGGGGTCCGACTGGAGCTCG
AGGGGAACGTCTCGTCGCCCCCCGGAGCCACCTTCATCGGTGGGCGATGG
CCGGGCACGGCAGCAGGCCAAGCGCCACACGAGCGGGACTCGTGGCAGTG
GAGGCGGATCGGGCTCAGGTTCAGACCGGATTCTCACCCGGAAGCACGGC
GCTCGGAAGGGTCCTTCTTCCAGGCAACTAGTGAAAGGGAGCTTGGATGG
AGGAACCCCTGGACCAGACGCTTTCCAGCTACCGTTGCGCCACCTGGCGG
AGCAATTTGACGTCGGAGACCGCCAAGAGTCGTTTTTGCGGCTGCAACAA
AGGTGTAGCAGATGGTACTCCTTTCGCGGACTATCTTCGGGCTTTCCGCT
TGTAAGTTTCGTCTGTGACTGGCTCTGAGCGTACTTTGGCCCCTAGTGTA
TCCATGGTTCTCGAAATAGTGCGAAACTCGGTCGACAAGCAATTTCCGAG
TCTGTCTCTGCTTTTGTACCCGGGTGCTTTGGCCACTGCGGTCAACCCCT
TTGAGTCAATTGCGGTTATGTGGGCGGCGTTCGTGCCTTTGGCGACTAAT
AAAACCCCGGCTATCGGTGGTTCATCTTATTTCTCGTTGACTTCGACGCG
TGGCTCTCCGCAGCCTCGGCGGTCTAACCACCGCGCCCCTGCGTCTTCGG
GCCGATGGGCATCCGGCTCCGCACAGCACCCTGTAGTTTTGCCCGTGCAA
CCTCAAGTCGCGGATCCTTCCACGCACAACTACAACTCGTGGCCTGCTTC
GCAAGCCGATTGGTCTGATGTATACGCCTTCACCGCTAATTTTCGAAAC

protein sequence of EsuBft1078_4a-0001

>EsuBft1078_4 ID=EsuBft1078_4|Name=EsuBft1078_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=182bp
MRAATMNATSPVVWPGCTVAAPASSAFQQPKAGRIKAKPAQRTVRESSSG
EGSDWSSRGTSRRPPEPPSSVGDGRARQQAKRHTSGTRGSGGGSGSGSDR
ILTRKHGARKGPSSRQLVKGSLDGGTPGPDAFQLPLRHLAEQFDVGDRQE
SFLRLQQRCSRWYSFRGLSSGFPLVSFVCDWL

mRNA from alignment at Scaffold_91:85223..90328+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1078_4a-0001 ID=EsuBft1078_4a-0001|Name=EsuBft1078_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5106bp|location=Sequence derived from alignment at Scaffold_91:85223..90328+ (Ectocarpus subulatus male Bft15b)
ATGGGATTTGAATGTGTAGGAAAGTACAAACGATAGTGCGGGCTAATGCC
CAGAGGAAAGTGCGGGAGATGCAACTCCCCACGGAAGGATAAAACAGGGG
ACAGGATCTAGCAGCGCTTGCTTAAGCAGCTGATCCTGGCCCCATCCTAG
TCAGTCCTCTACCTTCCCTTGGCAACAGCTACTGCAGTGTTCCAAACGAG
TTAATAACAAGTGAGTTCGTCTTCACGGTTCTCCCAGATTGCACCGTGCG
TGCATATCCCTTACACTTGGCGTTCGTTGTCGGCATAAACGTACAGCGTG
CTTTCTGGGGTTTGTGTTTGGGCGGCTCGAGCCTGCTGCTGCACGCAGCT
TTCTGCGCTTTCGTTTCCACACAACTTAGCTTTGCCTCGCTGATCGGTAT
GTCTCAACTTAGCGTCGGCTCCTCGGCCTCGGCCTCGGCCAGTCAAGAAC
CCTCAGAGTGTTCTCGCTCGCTGGTGTCTCCCCTCAGCTTCGGCTTTCGG
GCCGACCACCGACGATTCCCAATCGTCGTTGCTGCCGTCTTTTGATGGCG
CGCGTGCTGCTGATCCCATCATAGAAGCCACCCGTTTGTCAGAGCTTTGC
GCTCAACGCCGACGGGAGGAGTTCGCCTCCACGGCTTCTACTGACGATAA
CCCCGTGGGTGCTGTCCTCAAATTGCCGGCACCCACAGCAGAAGCTTCGG
TTTCCACCTCTGTCCTTTCGAGTACCCAGCCTTCTGTTTTTGCAGCCGCT
GGTGGTGTGTCCCAAGTTTTCCCGCCGGAACCACATGTTGCTGATTCCAC
TTTTCATCTCACCTCCACCGCCGCTGACCCTTCCGCTGTTGGGGCAGACA
TTGGTTTTGACAATACTGGCTCTAGTGCCGCGCTCGCCTCATGGCTCTGT
TGTTGGCTGCACACTGCATTTCGATTACACTGTGCCGGCCATTCCTCCTT
TTTCGTCGCGTAGCAGTCGTACACAAGCCGCCGCTCGTGACCAACGGCTT
CATGACCATCGTGCATCCGTTTCAGTGGCATCAGTGCCTTTGGTTTTGAC
TGCTTCAAAACCATCCGTTCCGGTGGTTTCGACTGCCTTTGCGGTTCCGA
CCGCTTCCAATGCAACCGTCTCAGTAGTTTCCACTGCCCCCGTTGCATCT
GCTCCTGTCGTTTCGACTGCCGTGGTTGCTTCCCTTGATCGTGATGCACC
TGCTTCTATAGTTTCGACTACTTCAACTGCAATTTCGGTTGCTGCCCCAC
CATCTGCTGCAGTAGCTCCGCATGTGTCTGAAGCATCTCCCGCTTCCGCT
ACCTTTTCTCCGCAGCTTCCCCTCTGCCGGCCCCAGTTTCGACTGTTTCA
AATGCATTGGCTTCAGTAGCTCCGTCGATGCCTGCAGTTTCGACTGCCTC
TGCTGCATCTATTGCTGTAGCTCCGCTTTTGCCCCCAATGATGGCTATTC
CCCGTGTTGGCCCTATGGGCGTCCGGCGTACACATTCGGCTATCATTAAC
CCAGCAGTTACCGTGCCAGTAGCTTCGTCTCGGACTGCATCCCTCACTGC
TGCACGCGTACCCACAGCCGACTCTGTGTCTGCCGTGTCTACTGCTGTTC
GCACGCTAGTTGCGGTCTCGGCTCCTCTAGCAGTAACCTCGGTTACTCCT
GCAGAACCTTCTGCCGATGCACCTGTTATTTTGTATAATGCGGTGCCTTC
ACCCCCCCTCCGCGCGCTCTGCCTCACACGAACGTGCCGCCACTTCCGCT
GCTTTACCCCTTCTTAAAATGGCAGAAAACGACAACCGTCGTCTTCGCGA
CCTCCCCCGAAATCTACCATGGTCGCCACCCAGCTTGTGGTCAACCCTGA
GGCTGCCTCCCTCACTGGTGGAGCCGTCTCCGCCCCTGCGATCCGAGCAA
CGGCCGCTGGCGCCGGCGAGAGGTCTTCGGCTACCCCCCGCCCGGCGTCG
CCTGTCCCCCTGGCCCCGCTTTCCACGGCTTCGGCGGCCCAAGCTGCTTC
GGCCGCCCAAGCTGCTTCGGCCGCCCCCGCTGCTTCGGCGGCCCCCGCTG
TTTCGGCAGCCCCAGCGGCTTTGGCGGCACCCGCAGCTTCGGCGGCACCC
CCGACCTCGTCGACCGACCTCGTCGGTACCTCCGCAGCGCAATCGTTGGG
TTTGTTCAATCCTGTGGGACTGCATGACCGACGACCAGCGGCTGCTGGCC
CTCTCCCCCCGGGTTCGCCAGGAAGCGGGAGAGGCGGTCGACCTCGACCG
CGAAGCGGTTCTTCGGGACCGCAACGCTCGGCTCGATGCCGAGTTCATCA
AAGCGACTGCGGAACGCCAAGCTAAATCGCGGTGTAAAGTGCGCGCCGCG
CCACCAACACAGACACCATCCTCGCCTACGCCCAGCGCAAACAAGCCCAG
GAACGGGAGTAGGCCCTGCTCGCCGCCCAGGTCGCCGACGATCGCCGCCA
AGAGGACGCAATGGTCACCGAACAGGCCCGCGCTGACCAACAGCGCTAAC
ACGATCTTCGGGTTCGGGCGGGGCGCTCCGTGCCGGGACCGGCCCCTGCT
GCCGCTCCTGCCCCGTCGACACCAGCGGCTCGGACGTACGCCGCTGCCGC
TGCCGCCTCCAGCCCTGTGACGCGGTCTTCATCACAGTCGCGCTCCGTCA
CCTTCGAGGCCGGGGACGCCAGGTTTACCCAGGCCAGGTTTTCTGACGTT
GCAAAATACGCCAAGGTCAACTTCCAGGTAGAGGATCGCAAGGCCGTCAT
GGACTTGGCGGCTGGCGTGTCCACCGCCCTGCCGTCGGCTGCCTCCATCC
AGGACGCCGCTGATGTGGCAAACGGGTCTCAGCCCGACCTCCAAGACGTG
GTGAGCTGCCTCCTCGTGGCGATGCGGGCGGCCACCATGAACGCAACGTC
TCCGGTGGTGTGGCCCGGCTGCACCGTGGCGGCTCCAGCATCTTCGGCGT
TCCAGCAGCCCAAGGCTGGCCGCATCAAGGCCAAGCCGGCCCAGCGCACC
GTGCGAGAGAGTAGTTCGGGCGAGGGGTCCGACTGGAGCTCGAGGGGAAC
GTCTCGTCGCCCCCCGGAGCCACCTTCATCGGTGGGCGATGGCCGGGCAC
GGCAGCAGGCCAAGCGCCACACGAGCGGGACTCGTGGCAGTGGAGGCGGA
TCGGGCTCAGGTTCAGACCGGATTCTCACCCGGAAGCACGGCGCTCGGAA
GGGTCCTTCTTCCAGGCAAGTAGTCCCGTCCCTTATGGATGCGACTTTGA
GTGATCGTTTTCTTTGACATGATGATATTTATTCTCAGGCTTCGGCCCCC
CCCTCGACATCGGTTGTTGGTACGGTTTAGGCCCCCCCCTGTTTCCTCGG
ACTCAGAGCGTTTGCGTCGTGTTGCGTTTTCGGACCTTCTCCCGCCTTTA
GCTTCCCCCGTTCCTTCGGAACCCTTTGCACCTTCTGTCCGTTCTGCCGC
ATTCAATGCTGTAGACTCCGGACGGGTACATAGCGTTGAGTTTTCGAACT
CAGCCCCGGTTTCGGCCGCACCTGTTCTTTGGAAACCTCTGCACCCCGTA
GCCTTTCTACCGCTCGCCATGCCGTAGATCCACGACTAATGCAGAACCCT
GGGCTTTCGAACCTCAACTCCCCTTCGGCGTTTGTACCACCAGTGCCGGG
TGTTTTGCATAGTATGTTGTCCTCGGACCATGCCCCCACAGCTGCTTCGG
TAGCCGTCGCCACACCCCCTGTTGTTTCCGATGATCGTGCTTTGCCACGT
TCTTCTAACACGGCACACACTCGTCAATCATCGATCGATGCGGNCTTTGC
ACCTTCTGTCCGTTCTGCCGCATTCAATGCTGTAGACTCCGGACGGGTAC
ATAGCGTTGAGTTTTCGAACTCAGCCCCGGTTTCGGCCGCACCTGTTCTT
TGGAAACCTCTGCACCCCGTAGCCTTTCTACCGCTCGCCATGCCGTAGAT
CCACGACTAATGCAGAACCCTGGGCTTTCGAACCTCAACTCCCCTTCGGC
GTTTGTACCACCAGTGCCGGGTGTTTTGCATAGTATGTTGTCCTCGGACC
ATGCCCCCACAGCTGCTTCGGTAGCCGTCGCCACACCCCCTGTTGTTTCC
GATGATCGTGCTTTGCCACGTTCTTCTAACACGGCACACACTCGTCAATC
ATCGATCGATGCGGCTGATGCAGCTGCTCGTAATGCTCATGTAGCTACAG
TACAACGAGCGTACATCACCCTCAACTTAAAAAAAGTTGAGAATGTCGCT
ACCATGCCCTTCTCCGCTTCTCTGCTGCCGGTAGACGGCTATCAGCAGCT
TCTTCGCACAAGAACGGCTTTGTCCGATATTTTGCTGTTGTGTGACGAGC
AGAGTGAAGGTTTGACAGGCACTGATTTTGTGCGTGGATGGGAACGTCCT
CTTGCAAAAATATTCTTGAGTGCGATCACCCCTGACAAGCCCTCTACCGC
CGATCTTGTCCTTGCCATTACGGATTACTTTCAGCTAGTGAAAGGGAGCT
TGGATGGAGGAACCCCTGGACCAGACGCTTTCCAGCTACCGTTGCGCCAC
CTGGCGGAGCAATTTGACGTCGGAGACCGCCAAGAGTCGTTTTTGCGGCT
GCAACAAAGGTGTAGCAGATGGTACTCCTTTCGCGGACTATCTTCGGGCT
TTCCGCTTGTAAGTTTCGTCTGTGACTGGCTCTGAGCGTACTTTGGCCCC
TAGTGTATCCATGGTTCTCGAAATAGTGCGAAACTCGGTCGACAAGCAAT
TTCCGAGTCTGTCTCTGCTTTTGTACCCGGGTGCTTTGGCCACTGCGGTC
AACCCCTTTGAGTCAATTGCGGTTATGTGGGCGGCGTTCGTGCCTTTGGC
GACTAATAAAACCCCGGCTATCGGTGGTTCATCTTATTTCTCGTTGACTT
CGACGCGTGGCTCTCCGCAGCCTCGGCGGTCTAACCACCGCGCCCCTGCG
TCTTCGGGCCGATGGGCATCCGGCTCCGCACAGCACCCTGTAGTTTTGCC
CGTGCAACCTCAAGTCGCGGATCCTTCCACGCACAACTACAACTCGTGGC
CTGCTTCGCAAGCCGATTGGTCTGATGTATACGCCTTCACCGCTAATTTT
CGAAAC

Coding sequence (CDS) from alignment at Scaffold_91:85223..90328+

>EsuBft1078_4a-0001 ID=EsuBft1078_4a-0001|Name=EsuBft1078_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=549bp|location=Sequence derived from alignment at Scaffold_91:85223..90328+ (Ectocarpus subulatus male Bft15b)
ATGCGGGCGGCCACCATGAACGCAACGTCTCCGGTGGTGTGGCCCGGCTG
CACCGTGGCGGCTCCAGCATCTTCGGCGTTCCAGCAGCCCAAGGCTGGCC
GCATCAAGGCCAAGCCGGCCCAGCGCACCGTGCGAGAGAGTAGTTCGGGC
GAGGGGTCCGACTGGAGCTCGAGGGGAACGTCTCGTCGCCCCCCGGAGCC
ACCTTCATCGGTGGGCGATGGCCGGGCACGGCAGCAGGCCAAGCGCCACA
CGAGCGGGACTCGTGGCAGTGGAGGCGGATCGGGCTCAGGTTCAGACCGG
ATTCTCACCCGGAAGCACGGCGCTCGGAAGGGTCCTTCTTCCAGGCAACT
AGTGAAAGGGAGCTTGGATGGAGGAACCCCTGGACCAGACGCTTTCCAGC
TACCGTTGCGCCACCTGGCGGAGCAATTTGACGTCGGAGACCGCCAAGAG
TCGTTTTTGCGGCTGCAACAAAGGTGTAGCAGATGGTACTCCTTTCGCGG
ACTATCTTCGGGCTTTCCGCTTGTAAGTTTCGTCTGTGACTGGCTCTGA