EsuBft1078_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1078_6a-0001
Unique NameEsuBft1078_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_91contigScaffold_91:52042..52870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_025006-tr
ProteomeIdEsuBft1078_6
Protein domainsPTHR19446
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length735
Hectar predicted targeting categoryother localisation
Evalue1.29e-34
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3ANGE@33154|Opisthokonta,3C1UZ@33208|Metazoa,3DH8F@33213|Bilateria
Date last modified2016-06-15
Date creation2016-06-15
KEGG rclassRC00004,RC00043,RC00070,RC02816
KEGG koko:K01908
KEGG ReactionR00926,R01354
KEGG Pathwayko00640,ko01100,map00640,map01100
EC6.2.1.17
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
BRITEko00000,ko00001,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1078_6aEsuBft1078_6aEctocarpus subulatus male Bft15bgeneScaffold_91 52042..52870 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1078_6a-0001-exonagat-exon-106991Ectocarpus subulatus male Bft15bexonScaffold_91 52042..52648 -
EsuBft1078_6a-0001-exonEsuBft1078_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_91 52743..52870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1078_6a-0001-cdsEsuBft1078_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_91 52042..52648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1078_6a-0001EsuBft1078_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_91 52042..52870 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1078_6a-0001 ID=EsuBft1078_6a-0001|Name=EsuBft1078_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=735bp|location=Sequence derived from alignment at Scaffold_91:52042..52870- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCCCACCTGGACGGATGTGTGATTGAGCTCGAAGAAATCTACAA
ACATCGCGACATGCGAGGACTGTACCAACACCTCAAGAGATCAGTGGGCC
TCAGCGGGAGACAAGCGGGGGGACAGCAGGACGACATCCTCCAGCGGTGG
GCGAGATTCTTCAGCACCTTACTCAACACCAAATCCCCCACCCTAAACCC
AGACATCATCGAACGAGTGACGCAGCGGCCAGCGACACGTGACACTCAAC
GGTTGGGAGATGTGCCAGAACCCGAGGAGGTGGCACGGGCAACGAAAGGC
CTCAAGAATTGGAAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCT
CAAGATCGATGACGACGAACCCTTCGTCCTGGGACACCTCCATCCCATCC
TCGTCAAGGTGTGGAACGGAGGAGATATTCCGCGAGAGTGGAAGGATGCA
ACCATCAAGGTGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTT
TAAGGGGATTTCGCTACTATCTTACGTAGACAAGGTCCCCATCAAGATCA
TCACCAACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAG
GAAGAGTGCAGATTTCGACCCGGGCGATCCACGGTCGACATGCTGTTCGT
CGTGCGCCACCTCCATCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTC
TACATGTGCTTCGTCGACTTGAACAAGGCGTATGA
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protein sequence of EsuBft1078_6a-0001

>EsuBft1078_6 ID=EsuBft1078_6|Name=EsuBft1078_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=244bp
MFAHLDGCVIELEEIYKHRDMRGLYQHLKRSVGLSGRQAGGQQDDILQRW
ARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPEPEEVARATKG
LKNWKAPGHDSLPAELLKIDDDEPFVLGHLHPILVKVWNGGDIPREWKDA
TIKVLYKKGDRSNCNNFKGISLLSYVDKVPIKIITNRLSAFCEANNILPE
EECRFRPGRSTVDMLFVVRHLHPGAGAEKENTALHVLRRLEQGV
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mRNA from alignment at Scaffold_91:52042..52870-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1078_6a-0001 ID=EsuBft1078_6a-0001|Name=EsuBft1078_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=829bp|location=Sequence derived from alignment at Scaffold_91:52042..52870- (Ectocarpus subulatus male Bft15b)
ATGTTTGCCCACCTGGACGGATGTGTGATTGAGCTCGAAGAAATCTACAA
ACATCGCGACATGCGAGGACTGTACCAACACCTCAAGAGATCAGTGGGCC
TCAGCGGGAGACAAGCGGGGGGACAGCAGTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGA
TTCTTCAGCACCTTACTCAACACCAAATCCCCCACCCTAAACCCAGACAT
CATCGAACGAGTGACGCAGCGGCCAGCGACACGTGACACTCAACGGTTGG
GAGATGTGCCAGAACCCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAG
AATTGGAAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGAT
CGATGACGACGAACCCTTCGTCCTGGGACACCTCCATCCCATCCTCGTCA
AGGTGTGGAACGGAGGAGATATTCCGCGAGAGTGGAAGGATGCAACCATC
AAGGTGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTTTAAGGG
GATTTCGCTACTATCTTACGTAGACAAGGTCCCCATCAAGATCATCACCA
ACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAAGAG
TGCAGATTTCGACCCGGGCGATCCACGGTCGACATGCTGTTCGTCGTGCG
CCACCTCCATCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATG
TGCTTCGTCGACTTGAACAAGGCGTATGA
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Coding sequence (CDS) from alignment at Scaffold_91:52042..52870-

>EsuBft1078_6a-0001 ID=EsuBft1078_6a-0001|Name=EsuBft1078_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=735bp|location=Sequence derived from alignment at Scaffold_91:52042..52870- (Ectocarpus subulatus male Bft15b)
ATGTTTGCCCACCTGGACGGATGTGTGATTGAGCTCGAAGAAATCTACAA
ACATCGCGACATGCGAGGACTGTACCAACACCTCAAGAGATCAGTGGGCC
TCAGCGGGAGACAAGCGGGGGGACAGCAGGACGACATCCTCCAGCGGTGG
GCGAGATTCTTCAGCACCTTACTCAACACCAAATCCCCCACCCTAAACCC
AGACATCATCGAACGAGTGACGCAGCGGCCAGCGACACGTGACACTCAAC
GGTTGGGAGATGTGCCAGAACCCGAGGAGGTGGCACGGGCAACGAAAGGC
CTCAAGAATTGGAAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCT
CAAGATCGATGACGACGAACCCTTCGTCCTGGGACACCTCCATCCCATCC
TCGTCAAGGTGTGGAACGGAGGAGATATTCCGCGAGAGTGGAAGGATGCA
ACCATCAAGGTGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTT
TAAGGGGATTTCGCTACTATCTTACGTAGACAAGGTCCCCATCAAGATCA
TCACCAACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAG
GAAGAGTGCAGATTTCGACCCGGGCGATCCACGGTCGACATGCTGTTCGT
CGTGCGCCACCTCCATCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTC
TACATGTGCTTCGTCGACTTGAACAAGGCGTATGA
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