EsuBft1132_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1132_2a-0001
Unique NameEsuBft1132_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_86contigScaffold_86:65342..66854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_012421-tr
ProteomeIdEsuBft1132_2
Protein domainsSSF56672
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon opus os:drosophila melanogaster gn:pol pe:3 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length1238
Hectar predicted targeting categoryother localisation
Evalue2.47e-55
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_2aEsuBft1132_2aEctocarpus subulatus male Bft15bgeneScaffold_86 65342..66854 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_2a-0001-exonagat-exon-96168Ectocarpus subulatus male Bft15bexonScaffold_86 65342..65431 -
EsuBft1132_2a-0001-exonEsuBft1132_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_86 65707..66854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_2a-0001-cdsEsuBft1132_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_86 65342..65431 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_2a-0001-exonagat-five_prime_utr-801Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_86 66691..66854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1132_2a-0001EsuBft1132_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_86 65342..66690 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1132_2a-0001 ID=EsuBft1132_2a-0001|Name=EsuBft1132_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1238bp|location=Sequence derived from alignment at Scaffold_86:65342..66854- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACGTCAGGCTTTCATCAAATTGAAATCGCCGCAAAGAATCGCTATAAAA
CAGCCTTCCGCGACGCAGACGGCATGTTGTACGAGTTTACACGTGCGGGA
TTCGGGCTAATAGTTCTACCTTCCGCGTTCACGTATCGAGTGAAGTCTGC
TTTAGGAATTATCGATGGCGTGTTCAGCTGGTTGGACGACATACTCGTCG
CAAAACGAAACGTGGGAAGAACACCTTGCCGAATTGGTGCTCGTCCTAAC
ACGCCTTCGTGCTGCTGGACTGTCCGTTCACTTTCCGAAATGCCTTTTCG
GGGCTTCGTCCCAAGAGTTTCTCGGAATGATAATTGAAGCTACCGGCATG
CACCCAGCCCCGTCGAAACTCGAAGCGATTGCCAACATACCCCGGCCACG
AACGGTCGAAGGCCTGCGCACGTTTCTAGGCTTGACGGCATATCTCCGAC
AATTTGTCCCTCAATACAGTTTAGTTTCGGCTCCCTTGACCGGCATCCTC
CGCAATAAGGACTTTGCGTCTAAGCGCGCACGTAAGCTCCCCATTCAGTG
GGAGGAAGCGGAGGAGCACGCCTTCCACCAACTACGACAGTGCCTGGCTT
CCCCTACCGTGTTAGCTTTTCCTGATCCTAATGCACCTTTTGAGCTGCAT
TCAGACGCTAGCTCAGTGGGCGCAGGTGCTACCCTGCTGCAGACCATCGG
CGGTACACCCAGGATCATCGCTTTCGCTAGCCACAAGTTCTCTCCCACCG
ATGCTCGACGAGGACCCACGGAACGGGAGTGCATGGGAGTATTGTGGGGC
GTTGATCATTTCAAGCCGTACCTAGCTGGTAGACAGTTCAGAGTCGTGAC
GGATTGCTCTGCACTCACGTGGTTGTTTCGTAGTAAAGAACTCTGTCCCA
AGTTGCATAGGGGGGCTCTTCGCCTCATGGAGTACGATATAGTATTTGCA
TGGAGGGAAGGAGTACATCACGTGTTGCCAGATGCTCTGTCCCGTCTCCC
CGTGGCCAGTAGCCCCTCCGTAGATATAGACGACTCTTTTCCTGACGATT
TCACGTCCCCGGATTCCGCTACTTTTGTTGGCCCGCAAGGCCCTGTGCTT
GATGGTGTGCGTCTCGCGGACCTCACGACCGAGAACGAATCCGAGCCCGT
GACCATAGATGCAAGGGTTGGTCCCGGGACTGTCGTGTGCAAGGATGAGG
AAGATTTCGTAGAAGATGTGTTGATCTACGCCTCCTGA
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protein sequence of EsuBft1132_2a-0001

>EsuBft1132_2 ID=EsuBft1132_2|Name=EsuBft1132_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=357bp
MACSAGWTTYSSQNETWEEHLAELVLVLTRLRAAGLSVHFPKCLFGASSQ
EFLGMIIEATGMHPAPSKLEAIANIPRPRTVEGLRTFLGLTAYLRQFVPQ
YSLVSAPLTGILRNKDFASKRARKLPIQWEEAEEHAFHQLRQCLASPTVL
AFPDPNAPFELHSDASSVGAGATLLQTIGGTPRIIAFASHKFSPTDARRG
PTERECMGVLWGVDHFKPYLAGRQFRVVTDCSALTWLFRSKELCPKLHRG
ALRLMEYDIVFAWREGVHHVLPDALSRLPVASSPSVDIDDSFPDDFTSPD
SATFVGPQGPVLDGVRLADLTTENESEPVTIDARVGPGTVVCKDEEDFVE
DVLIYAS
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mRNA from alignment at Scaffold_86:65342..66854-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1132_2a-0001 ID=EsuBft1132_2a-0001|Name=EsuBft1132_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1513bp|location=Sequence derived from alignment at Scaffold_86:65342..66854- (Ectocarpus subulatus male Bft15b)
AACGTCAGGCTTTCATCAAATTGAAATCGCCGCAAAGAATCGCTATAAAA
CAGCCTTCCGCGACGCAGACGGCATGTTGTACGAGTTTACACGTGCGGGA
TTCGGGCTAATAGTTCTACCTTCCGCGTTCACGTATCGAGTGAAGTCTGC
TTTAGGAATTATCGATGGCGTGTTCAGCTGGTTGGACGACATACTCGTCG
CAAAACGAAACGTGGGAAGAACACCTTGCCGAATTGGTGCTCGTCCTAAC
ACGCCTTCGTGCTGCTGGACTGTCCGTTCACTTTCCGAAATGCCTTTTCG
GGGCTTCGTCCCAAGAGTTTCTCGGAATGATAATTGAAGCTACCGGCATG
CACCCAGCCCCGTCGAAACTCGAAGCGATTGCCAACATACCCCGGCCACG
AACGGTCGAAGGCCTGCGCACGTTTCTAGGCTTGACGGCATATCTCCGAC
AATTTGTCCCTCAATACAGTTTAGTTTCGGCTCCCTTGACCGGCATCCTC
CGCAATAAGGACTTTGCGTCTAAGCGCGCACGTAAGCTCCCCATTCAGTG
GGAGGAAGCGGAGGAGCACGCCTTCCACCAACTACGACAGTGCCTGGCTT
CCCCTACCGTGTTAGCTTTTCCTGATCCTAATGCACCTTTTGAGCTGCAT
TCAGACGCTAGCTCAGTGGGCGCAGGTGCTACCCTGCTGCAGACCATCGG
CGGTACACCCAGGATCATCGCTTTCGCTAGCCACAAGTTCTCTCCCACCG
ATGCTCGACGAGGACCCACGGAACGGGAGTGCATGGGAGTATTGTGGGGC
GTTGATCATTTCAAGCCGTACCTAGCTGGTAGACAGTTCAGAGTCGTGAC
GGATTGCTCTGCACTCACGTGGTTGTTTCGTAGTAAAGAACTCTGTCCCA
AGTTGCATAGGGGGGCTCTTCGCCTCATGGAGTACGATATAGTATTTGCA
TGGAGGGAAGGAGTACATCACGTGTTGCCAGATGCTCTGTCCCGTCTCCC
CGTGGCCAGTAGCCCCTCCGTAGATATAGACGACTCTTTTCCTGACGATT
TCACGTCCCCGGATTCCGCTACTTTTGTTGGCCCGCAAGGCCCTGTGCTT
GATGGTGTGCGTCTCGCGGACCTCACGACCGAGAACGAATCCGAGCCCGT
AAATACCGATAGTGAGATTGATCCCGCGGTCATAACACCACATTGGCTGA
CTTCCCGTTTGCTGCCTGTGCCTCGCACGATGAACTTGTGCCACCACGTC
GCTCAGGCAGACGACGCACGCCCTTCAGTATGCCTACAACCCCTCAACGA
CCCTCAGCTGCCTACCGTGGCACAGGTGTTATCAACTAGGCTACAACGCG
AGTTCGCACCTGAGCCCATCGAGCTACCCCCAGCTCATCCACCGGAACCG
TCCACCGCCTTGTAAAGAAGTAGGTGACCATAGATGCAAGGGTTGGTCCC
GGGACTGTCGTGTGCAAGGATGAGGAAGATTTCGTAGAAGATGTGTTGAT
CTACGCCTCCTGA
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Coding sequence (CDS) from alignment at Scaffold_86:65342..66854-

>EsuBft1132_2a-0001 ID=EsuBft1132_2a-0001|Name=EsuBft1132_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1074bp|location=Sequence derived from alignment at Scaffold_86:65342..66854- (Ectocarpus subulatus male Bft15b)
ATGGCGTGTTCAGCTGGTTGGACGACATACTCGTCGCAAAACGAAACGTG
GGAAGAACACCTTGCCGAATTGGTGCTCGTCCTAACACGCCTTCGTGCTG
CTGGACTGTCCGTTCACTTTCCGAAATGCCTTTTCGGGGCTTCGTCCCAA
GAGTTTCTCGGAATGATAATTGAAGCTACCGGCATGCACCCAGCCCCGTC
GAAACTCGAAGCGATTGCCAACATACCCCGGCCACGAACGGTCGAAGGCC
TGCGCACGTTTCTAGGCTTGACGGCATATCTCCGACAATTTGTCCCTCAA
TACAGTTTAGTTTCGGCTCCCTTGACCGGCATCCTCCGCAATAAGGACTT
TGCGTCTAAGCGCGCACGTAAGCTCCCCATTCAGTGGGAGGAAGCGGAGG
AGCACGCCTTCCACCAACTACGACAGTGCCTGGCTTCCCCTACCGTGTTA
GCTTTTCCTGATCCTAATGCACCTTTTGAGCTGCATTCAGACGCTAGCTC
AGTGGGCGCAGGTGCTACCCTGCTGCAGACCATCGGCGGTACACCCAGGA
TCATCGCTTTCGCTAGCCACAAGTTCTCTCCCACCGATGCTCGACGAGGA
CCCACGGAACGGGAGTGCATGGGAGTATTGTGGGGCGTTGATCATTTCAA
GCCGTACCTAGCTGGTAGACAGTTCAGAGTCGTGACGGATTGCTCTGCAC
TCACGTGGTTGTTTCGTAGTAAAGAACTCTGTCCCAAGTTGCATAGGGGG
GCTCTTCGCCTCATGGAGTACGATATAGTATTTGCATGGAGGGAAGGAGT
ACATCACGTGTTGCCAGATGCTCTGTCCCGTCTCCCCGTGGCCAGTAGCC
CCTCCGTAGATATAGACGACTCTTTTCCTGACGATTTCACGTCCCCGGAT
TCCGCTACTTTTGTTGGCCCGCAAGGCCCTGTGCTTGATGGTGTGCGTCT
CGCGGACCTCACGACCGAGAACGAATCCGAGCCCGTGACCATAGATGCAA
GGGTTGGTCCCGGGACTGTCGTGTGCAAGGATGAGGAAGATTTCGTAGAA
GATGTGTTGATCTACGCCTCCTGA
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