EsuBft1132_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1132_11a-0001
Unique Name	EsuBft1132_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_86	contig	Scaffold_86:22855..23636 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1132_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	78
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_11a	EsuBft1132_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_86 22855..23636 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_11a-0001-exon	EsuBft1132_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_86 22855..23636 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_11a-0001-exon	agat-five_prime_utr-800	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_86 22855..22914 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_11a-0001-cds	EsuBft1132_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_86 22915..23478 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_11a-0001-exon	agat-three_prime_utr-1255	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_86 23479..23636 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1132_11a-0001	EsuBft1132_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_86 22915..23478 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_86:22855..23636+
coding sequence from alignment at Scaffold_86:22855..23636+

spliced messenger RNA

>EsuBft1132_11a-0001 ID=EsuBft1132_11a-0001|Name=EsuBft1132_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=782bp|location=Sequence derived from alignment at Scaffold_86:22855..23636+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGCGTAGGCCGCAAACACTCTTAGAGAGTTACTGCCCCCCGTTGGAAG
CCACATTGGGATGAGCTCTGCTGGAGACGAAGAGCGCACTGCTGCGAGCG
GAGAAGAAATTCGCCCGCCGGTGCAGGAGGGCAGCGATGCGGAGCTTACG
AGTTTGCAACTGCAGGTTTCGCGATTGGCGGCCCTGGTGGAGGAATCGGT
GAAGAAGAAGGAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGCG
GCTGGGTTGCTGCCCATGAAGGCCAACAAGAGCCCCTTCAGCCGCACGGC
GGAGGCGGGGGATTTCTCCAGCAGCAAGCGATTGATGGTGGGCAAGGACC
ACGGCGGCTGCTGGAAGGCGGCTGGGCCAGCAGATCGGGAGAGAACCCTG
TGGGACCAGCCGGAGTGGGCCTGGGCATAGGACCGGACTACGGGGAAGCG
AGGGGGTTAAACCCCCCAGGTGAGATACCCGTGATTCGAGGAAATGGAGA
ATACCTCGACGGCGACAGCAGTAGCCACCAGAAAAGAGTGACGGTCAATG
CCCCGCTTCTAGACGGAAAAAGCCGTAGCCACGGATTTGATTCATGGCGA
AAATCGTTCATCCAAGTTGCGTAATACCATCGACTTGGACGGGTAATTTA
TAGGAGATGCAGAGAGCAATATCCCCGTGGGCGACCCAAACTTGCCGACT
TCCGAACTGCTCCGTAGGGGGCACACGAGAGCAGAAGTCCAACGAGGGCT
TCAGGCGTTACATTTTATCACTACTGCTGTGG

protein sequence of EsuBft1132_11a-0001

>EsuBft1132_11 ID=EsuBft1132_11|Name=EsuBft1132_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MSSAGDEERTAASGEEIRPPVQEGSDAELTSLQLQVSRLAALVEESVKKK
EPGSVVADAASRGGWVAAHEGQQEPLQPHGGGGGFLQQQAIDGGQGPRRL
LEGGWASRSGENPVGPAGVGLGIGPDYGEARGLNPPGEIPVIRGNGEYLD
GDSSSHQKRVTVNAPLLDGKSRSHGFDSWRKSFIQVA

mRNA from alignment at Scaffold_86:22855..23636+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1132_11a-0001 ID=EsuBft1132_11a-0001|Name=EsuBft1132_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=782bp|location=Sequence derived from alignment at Scaffold_86:22855..23636+ (Ectocarpus subulatus male Bft15b)
GTGGCGTAGGCCGCAAACACTCTTAGAGAGTTACTGCCCCCCGTTGGAAG
CCACATTGGGATGAGCTCTGCTGGAGACGAAGAGCGCACTGCTGCGAGCG
GAGAAGAAATTCGCCCGCCGGTGCAGGAGGGCAGCGATGCGGAGCTTACG
AGTTTGCAACTGCAGGTTTCGCGATTGGCGGCCCTGGTGGAGGAATCGGT
GAAGAAGAAGGAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGCG
GCTGGGTTGCTGCCCATGAAGGCCAACAAGAGCCCCTTCAGCCGCACGGC
GGAGGCGGGGGATTTCTCCAGCAGCAAGCGATTGATGGTGGGCAAGGACC
ACGGCGGCTGCTGGAAGGCGGCTGGGCCAGCAGATCGGGAGAGAACCCTG
TGGGACCAGCCGGAGTGGGCCTGGGCATAGGACCGGACTACGGGGAAGCG
AGGGGGTTAAACCCCCCAGGTGAGATACCCGTGATTCGAGGAAATGGAGA
ATACCTCGACGGCGACAGCAGTAGCCACCAGAAAAGAGTGACGGTCAATG
CCCCGCTTCTAGACGGAAAAAGCCGTAGCCACGGATTTGATTCATGGCGA
AAATCGTTCATCCAAGTTGCGTAATACCATCGACTTGGACGGGTAATTTA
TAGGAGATGCAGAGAGCAATATCCCCGTGGGCGACCCAAACTTGCCGACT
TCCGAACTGCTCCGTAGGGGGCACACGAGAGCAGAAGTCCAACGAGGGCT
TCAGGCGTTACATTTTATCACTACTGCTGTGG

Coding sequence (CDS) from alignment at Scaffold_86:22855..23636+

>EsuBft1132_11a-0001 ID=EsuBft1132_11a-0001|Name=EsuBft1132_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_86:22855..23636+ (Ectocarpus subulatus male Bft15b)
ATGAGCTCTGCTGGAGACGAAGAGCGCACTGCTGCGAGCGGAGAAGAAAT
TCGCCCGCCGGTGCAGGAGGGCAGCGATGCGGAGCTTACGAGTTTGCAAC
TGCAGGTTTCGCGATTGGCGGCCCTGGTGGAGGAATCGGTGAAGAAGAAG
GAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGCGGCTGGGTTGC
TGCCCATGAAGGCCAACAAGAGCCCCTTCAGCCGCACGGCGGAGGCGGGG
GATTTCTCCAGCAGCAAGCGATTGATGGTGGGCAAGGACCACGGCGGCTG
CTGGAAGGCGGCTGGGCCAGCAGATCGGGAGAGAACCCTGTGGGACCAGC
CGGAGTGGGCCTGGGCATAGGACCGGACTACGGGGAAGCGAGGGGGTTAA
ACCCCCCAGGTGAGATACCCGTGATTCGAGGAAATGGAGAATACCTCGAC
GGCGACAGCAGTAGCCACCAGAAAAGAGTGACGGTCAATGCCCCGCTTCT
AGACGGAAAAAGCCGTAGCCACGGATTTGATTCATGGCGAAAATCGTTCA
TCCAAGTTGCGTAA