EsuBft1066_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1066_2a-0001
Unique NameEsuBft1066_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_85contigScaffold_85:142061..142578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1066_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length51
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1066_2aEsuBft1066_2aEctocarpus subulatus male Bft15bgeneScaffold_85 142061..142578 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1066_2a-0001-exonEsuBft1066_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_85 142061..142578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1066_2a-0001-cdsEsuBft1066_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_85 142061..142477 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1066_2a-0001-exonagat-five_prime_utr-403Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_85 142478..142578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1066_2a-0001EsuBft1066_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_85 142061..142477 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1066_2a-0001 ID=EsuBft1066_2a-0001|Name=EsuBft1066_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_85:142061..142578- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCTGATCGTGTCTGCTGTCCTAAATACAAGTGATACCATCATCTTCAAC
ACACATACATGGGTATACTAACACTCTAGAGTGTATCCCTCGAGGGAACC
CATGCTGGAGATGGGTGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCA
CCACTACTACGCAGGGCAGAGTTGACAACCTGGAGAGCGAAGTTTCAGGC
CTGACGGACGAGGTACAGCAGCTGGCAGGGACTCTCCGAGTCTCCCTCGG
AAAGTCAGAAAAGGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCG
TTACGGGCACTACGTCTGCCCGCGGTCTGCTGGAAGAGCGGCCGCACAAC
GACGGAATCACGCCGCCCGCACAGCACGGGGGAAGAAGCTCCAGACCGGG
AGCCAGCCTGGTAGTGCCAAGGATCCGTGCTGGAGTGGACCCGGGCATAG
GACCGGGCAGCGGGGAGGTCATGGGTCATCATCCCAACAGCAGCCTGCTG
CGGTGGGCGCTTGCATAG
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protein sequence of EsuBft1066_2a-0001

>EsuBft1066_2 ID=EsuBft1066_2|Name=EsuBft1066_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=138bp
MLEMGGADVAAEAADVTTTTQGRVDNLESEVSGLTDEVQQLAGTLRVSLG
KSEKEGESGGAGVGAVVTGTTSARGLLEERPHNDGITPPAQHGGRSSRPG
ASLVVPRIRAGVDPGIGPGSGEVMGHHPNSSLLRWALA
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mRNA from alignment at Scaffold_85:142061..142578-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1066_2a-0001 ID=EsuBft1066_2a-0001|Name=EsuBft1066_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_85:142061..142578- (Ectocarpus subulatus male Bft15b)
TCCTGATCGTGTCTGCTGTCCTAAATACAAGTGATACCATCATCTTCAAC
ACACATACATGGGTATACTAACACTCTAGAGTGTATCCCTCGAGGGAACC
CATGCTGGAGATGGGTGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCA
CCACTACTACGCAGGGCAGAGTTGACAACCTGGAGAGCGAAGTTTCAGGC
CTGACGGACGAGGTACAGCAGCTGGCAGGGACTCTCCGAGTCTCCCTCGG
AAAGTCAGAAAAGGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCG
TTACGGGCACTACGTCTGCCCGCGGTCTGCTGGAAGAGCGGCCGCACAAC
GACGGAATCACGCCGCCCGCACAGCACGGGGGAAGAAGCTCCAGACCGGG
AGCCAGCCTGGTAGTGCCAAGGATCCGTGCTGGAGTGGACCCGGGCATAG
GACCGGGCAGCGGGGAGGTCATGGGTCATCATCCCAACAGCAGCCTGCTG
CGGTGGGCGCTTGCATAG
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Coding sequence (CDS) from alignment at Scaffold_85:142061..142578-

>EsuBft1066_2a-0001 ID=EsuBft1066_2a-0001|Name=EsuBft1066_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=417bp|location=Sequence derived from alignment at Scaffold_85:142061..142578- (Ectocarpus subulatus male Bft15b)
ATGCTGGAGATGGGTGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCAC
CACTACTACGCAGGGCAGAGTTGACAACCTGGAGAGCGAAGTTTCAGGCC
TGACGGACGAGGTACAGCAGCTGGCAGGGACTCTCCGAGTCTCCCTCGGA
AAGTCAGAAAAGGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCGT
TACGGGCACTACGTCTGCCCGCGGTCTGCTGGAAGAGCGGCCGCACAACG
ACGGAATCACGCCGCCCGCACAGCACGGGGGAAGAAGCTCCAGACCGGGA
GCCAGCCTGGTAGTGCCAAGGATCCGTGCTGGAGTGGACCCGGGCATAGG
ACCGGGCAGCGGGGAGGTCATGGGTCATCATCCCAACAGCAGCCTGCTGC
GGTGGGCGCTTGCATAG
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