EsuBft885_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft885_3a-0001
Unique NameEsuBft885_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_84contigScaffold_84:106385..108901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft885_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length214
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft885_3aEsuBft885_3aEctocarpus subulatus male Bft15bgeneScaffold_84 106385..108901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_3a-0001EsuBft885_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_84 106385..106838 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_3a-0001-exonagat-exon-109717Ectocarpus subulatus male Bft15bexonScaffold_84 106385..106424 +
EsuBft885_3a-0001-exonagat-exon-109718Ectocarpus subulatus male Bft15bexonScaffold_84 106729..107441 +
EsuBft885_3a-0001-exonEsuBft885_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_84 107507..108901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_3a-0001-cdsEsuBft885_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_84 106385..106424 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_3a-0001-exonagat-three_prime_utr-22683Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_84 106839..107441 +
EsuBft885_3a-0001-exonagat-three_prime_utr-22684Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_84 107507..108901 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft885_3a-0001 ID=EsuBft885_3a-0001|Name=EsuBft885_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2148bp|location=Sequence derived from alignment at Scaffold_84:106385..108901+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTGGCGTACTGCCTGGACTACAACCGTCTGTCGGGCATGTCTTC
GATGCAACAATGCACCGTCGACGACCTTCTCAGTAAAAATGAAGAGGACC
TCGCCCATGGTCTCCTCGACGTTTACGAACAACACCTGGCGGACGAATAG
ACGTTTTTTCCAGACCTTCCTGTGGGAGTGGCACGACATCCGAAGTGCCT
CAACGACCTATCTTGAAGGACCAACTTCTGACCTTCGTAGATTTCGAGCT
TTGTGTCCCTTTCTGTCTCTTTCTGCAAAGAGTACCTGCTGAACATAGCG
TTCAATAGTAGTTGCAACTGCACATAGAAACATGTCGTTGCCAAGTAAAC
ATCGCGCACGCCGGGTGTAAAATGCTGCTGTACATAACGTTCAACTGTCG
TCCAGCTGTACATAACGCTGCCGCATATATTGCGCCTTGGAATACCGCTT
TCTTTCTACAATTTTTATTTGGAGGGCGTGATACGATTGGTCCACTAGAC
GAGAGGAGGGTGCACTACGTGTGTATCGGCGAAAAAAGCGGCTTTCAGTC
ATATTCGTGTAACCCCGGGTGGGGATAGTGCTGAGTATATGGACATGTTC
AATGGTACATGGCGAAAAATGTCATAGCCTGGTTTGGTGTGTTGTTGTTT
GTGTAATGATTTTGGAGTAAGACAAAGTAGCATCGTAACTCGCTTCGCTC
GCAGACACACTTCACGGGGTTCCGGACGCGGTGCAGTGTGCGGTTACAGT
GCCTGTTGTGTGACTCGCTTCGCTCGAAGGCACTTCACGGGGTTCCGAGC
GTCGTGCAGTGTGCGTCACAGGAGTGCCTGCCGTGTTGCTCGCATGTACT
CAAAGGCAGTTTGTCCGCAGCAGCGTCATGTTCCCCCTTTCGAGGAGTTC
CTTATTATGTGCTTCGTCAAACACCGGTGTGCCTCTCCTCTCCTTCTATT
GCACAAGGTGAATAATTGTTCGACCGTTCAGCAAGTGCATACTCCCCCTC
GACACGTGTTGCCCCACCTAAACCGTTGTACAGAACTCCAGGCCACACAC
CCGCCCACCCGTCTGGGGCGTAGTATGACCGTCTTTCGTCCCACAGCGTA
GCGTACGCAACTCCCCTACCCCTCACGTTAACCGTAACAGTGGCCGGTGC
CTTTTGTCGCATGTCGGCTGGAGCGTTGATGGCATCGATGGGCGGTTGGA
ACGCCTCCTTGAGGAACTCTCTTGCTAACTCTCTGTCCTGCAAGACATCG
TCTGGTAACACGAGGAACAGGCCGTCTAGAGTTTTCCCCCTGGACACGGC
GGTATACCCCTGACCCTGGGCGAAGAACCCTCTAGAGGGAATCCACACGG
CCACCCTTTCGAACCCTACCCCTTGCACTCTGTGTACGGTCATGCAAGCA
GCGACCATGAAAGGCCACTGCTTAACGATGTACGTGCCGCTGACCGCTAC
CCCTCTGCAGTAAGGCACCCATACCATTTTGTCCTCGAAGGGCTGTATTT
TGACAGTGCTCTCCCTCCCCTTGCCACTCGTAAGCTCAACCTCGACCCAC
GCTGGGCGCTTATGGTAGAGTATGCAGTTGTCCCGTGCCCCAGCAGCAGT
TTGTGGAGAGTCAGAGGGTGGTGAATTCGAGCACAAGACAGAGAGACAGA
GAAGGAGTACGAGCGAAGAGAGACGTACAGCAACTGCTGTGATGACGATT
CAGTATGTGATGCGTGCGCGCATGATGTGTGGTTGTACCTGTTGATGCAC
ACGCTTTTGCTCCTCCATGGAGGAGGCGGTTGTACATCGACGCTGCTCTG
CGGTTCGTAACCGAGAAGGAGCACAGCAGGTGAGAGCTGCTACGAACGCA
AGAGTGGTTGCTACGCGGGCATCCACGTGGTACTGCTGTATAGCTCATGG
CATAGCAATCGTCTGCGCTAGTTACAGTAGCAGACATGCAGCCCAGCAGC
AACAGATGGGTCACCTGCTGCGTTTCAATGTTTCTATGCAAGACTTAGTG
CTGTGCCTGCTGGATGTACTGAATGCTGGTGTGAAGTAGTTTTGCGTTTT
GGTTTTCCGGGGACGCGCCTCCCGCAGCCCAGGGCACAAAGAAGTGAGGC
TAAGCCAGATATATGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft885_3a-0001

>EsuBft885_3 ID=EsuBft885_3|Name=EsuBft885_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MLLAYCLDYNRLSGMSSMQQCTVDDLLSKNEEDLAHGLLDVYEQHLADE
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mRNA from alignment at Scaffold_84:106385..108901+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft885_3a-0001 ID=EsuBft885_3a-0001|Name=EsuBft885_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2517bp|location=Sequence derived from alignment at Scaffold_84:106385..108901+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGGCGTACTGCCTGGACTACAACCGTCTGTCGGGTGTATTTGT
CTGTGTTGGCCACATAAGCGCCGGGTTTACAACATATCTCCATCTTCTGC
ACTGAAGCACTGCTGTGCTTCTGCTGCTACAAGCTCTACGAGCTATCACA
CCGACTAGCGTTGGTGGGCGTCAGCTTCTGCTGCTACGTGCTGGGGTACG
CACACAATCCTCCGCCCCCGTTCCGGTGCCAAACACGTGTTTTATTCAAT
ACGACAGCAGCAATTCCCATCACTGCCGAACAATGCATTACCAACATAGA
CTTTACCCCGACAGCGTTCTCTCCACTCACATCCATTCCCGCAGGCATGT
CTTCGATGCAACAATGCACCGTCGACGACCTTCTCAGTAAAAATGAAGAG
GACCTCGCCCATGGTCTCCTCGACGTTTACGAACAACACCTGGCGGACGA
ATAGACGTTTTTTCCAGACCTTCCTGTGGGAGTGGCACGACATCCGAAGT
GCCTCAACGACCTATCTTGAAGGACCAACTTCTGACCTTCGTAGATTTCG
AGCTTTGTGTCCCTTTCTGTCTCTTTCTGCAAAGAGTACCTGCTGAACAT
AGCGTTCAATAGTAGTTGCAACTGCACATAGAAACATGTCGTTGCCAAGT
AAACATCGCGCACGCCGGGTGTAAAATGCTGCTGTACATAACGTTCAACT
GTCGTCCAGCTGTACATAACGCTGCCGCATATATTGCGCCTTGGAATACC
GCTTTCTTTCTACAATTTTTATTTGGAGGGCGTGATACGATTGGTCCACT
AGACGAGAGGAGGGTGCACTACGTGTGTATCGGCGAAAAAAGCGGCTTTC
AGTCATATTCGTGTAACCCCGGGTGGGGATAGTGCTGAGTATATGGACAT
GTTCAATGGTACATGGCGAAAAATGTCATAGCCTGGTTTGGTGTGTTGTT
GTTTGTGTAATGATTTTGGAGTAAGACAAAGTAGCATCGTAACTCGCTTC
GCTCGCAGACACACTTCACGGGGTTCCGGACGCGGTGCAGTGTGCGGTTA
CAGTGCCGTGTGGCTCGCTTCGCTCGAAGGCACTTGGCGAGGTTTCGGGC
GCGGTGCAGTGTGCGGTCACAGTGTTGTGTGACTCGCTTCGCTCGAAGGC
ACTTCACGGGGTTCCGAGCGTCGTGCAGTGTGCGTCACAGGAGTGCCTGC
CGTGTTGCTCGCATGTACTCAAAGGCAGTTTGTCCGCAGCAGCGTCATGT
TCCCCCTTTCGAGGAGTTCCTTATTATGTGCTTCGTCAAACACCGGTGTG
CCTCTCCTCTCCTTCTATTGCACAAGGTGAATAATTGTTCGACCGTTCAG
CAAGTGCATACTCCCCCTCGACACGTGTTGCCCCACCTAAACCGTTGTAC
AGAACTCCAGGCCACACACCCGCCCACCCGTCTGGGGCGTAGTATGACCG
TCTTTCGTCCCACAGCGTAGCGTACGCAACTCCCCTACCCCTCACGTTAA
CCGTAACAGTGGCCGGTGCCTTTTGTCGCATGTCGGCTGGAGCGTTGATG
GCATCGATGGGCGGTTGGAACGCCTCCTTGAGGAACTCTCTTGCTAACTC
TCTGTCCTGCAAGACATCGTCTGGTAACACGAGGAACAGGCCGTCTAGAG
TTTTCCCCCTGGACACGGCGGTATACCCCTGACCCTGGGCGAAGAACCCT
CTAGAGGGAATCCACACGGCCACCCTTTCGAACCCTACCCCTTGCACTCT
GTGTACGGTCATGCAAGCAGCGACCATGAAAGGCCACTGCTTAACGATGT
ACGTGCCGCTGACCGCTACCCCTCTGCAGTAAGGCACCCATACCATTTTG
TCCTCGAAGGGCTGTATTTTGACAGTGCTCTCCCTCCCCTTGCCACTCGT
AAGCTCAACCTCGACCCACGCTGGGCGCTTATGGTAGAGTATGCAGTTGT
CCCGTGCCCCAGCAGCAGTTTGTGGAGAGTCAGAGGGTGGTGAATTCGAG
CACAAGACAGAGAGACAGAGAAGGAGTACGAGCGAAGAGAGACGTACAGC
AACTGCTGTGATGACGATTCAGTATGTGATGCGTGCGCGCATGATGTGTG
GTTGTACCTGTTGATGCACACGCTTTTGCTCCTCCATGGAGGAGGCGGTT
GTACATCGACGCTGCTCTGCGGTTCGTAACCGAGAAGGAGCACAGCAGGT
GAGAGCTGCTACGAACGCAAGAGTGGTTGCTACGCGGGCATCCACGTGGT
ACTGCTGTATAGCTCATGGCATAGCAATCGTCTGCGCTAGTTACAGTAGC
AGACATGCAGCCCAGCAGCAACAGATGGGTCACCTGCTGCGTTTCAATGT
TTCTATGCAAGACTTAGTGCTGTGCCTGCTGGATGTACTGAATGCTGGTG
TGAAGTAGTTTTGCGTTTTGGTTTTCCGGGGACGCGCCTCCCGCAGCCCA
GGGCACAAAGAAGTGAGGCTAAGCCAGATATATGTCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_84:106385..108901+

>EsuBft885_3a-0001 ID=EsuBft885_3a-0001|Name=EsuBft885_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_84:106385..108901+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGGCGTACTGCCTGGACTACAACCGTCTGTCGGGCATGTCTTC
GATGCAACAATGCACCGTCGACGACCTTCTCAGTAAAAATGAAGAGGACC
TCGCCCATGGTCTCCTCGACGTTTACGAACAACACCTGGCGGACGAATAG
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