EsuBft961_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft961_8a-0001
Unique Name	EsuBft961_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_82	contig	Scaffold_82:192910..194064 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft961_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	115
Evalue	2.34e-44
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft961_8a	EsuBft961_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_82 192910..194064 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft961_8a-0001-exon	EsuBft961_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_82 192910..194064 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft961_8a-0001-cds	EsuBft961_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_82 192910..193524 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft961_8a-0001-exon	agat-three_prime_utr-23544	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_82 193525..194064 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft961_8a-0001	EsuBft961_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_82 192910..193524 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_82:192910..194064+
coding sequence from alignment at Scaffold_82:192910..194064+

spliced messenger RNA

>EsuBft961_8a-0001 ID=EsuBft961_8a-0001|Name=EsuBft961_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1155bp|location=Sequence derived from alignment at Scaffold_82:192910..194064+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAA
GTGGGCAAACAAAATGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTG
TAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAA
ACGGAGGGTCTACAAGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGA
GAGAGAAGAACAGAATCTAAGGAAAGAATCCAAGGATAAGGAGGGTCCAG
AAGTGTACGGAATGTTGAAGGAAGGAATTGGGTTCAAGGATTACCTACAT
GGACCAATGGATGCAGGAACAAGGCTTAAGGTCAAATTCAGGACCGGGGA
CATAGGCCTCCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAG
ACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCAT
GTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGAC
TGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGA
ATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAA
AAGGCGGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCGC

protein sequence of EsuBft961_8a-0001

>EsuBft961_8 ID=EsuBft961_8|Name=EsuBft961_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=205bp
MCGMGEERLPRIVWEAKWANKMRGRQPTEWVKVVEDVWKGLDIDEDETLE
TEGLQGFKEKISVACAEREEQNLRKESKDKEGPEVYGMLKEGIGFKDYLH
GPMDAGTRLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVH
VVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVE
KAGXX

mRNA from alignment at Scaffold_82:192910..194064+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft961_8a-0001 ID=EsuBft961_8a-0001|Name=EsuBft961_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1155bp|location=Sequence derived from alignment at Scaffold_82:192910..194064+ (Ectocarpus subulatus male Bft15b)
ATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAA
GTGGGCAAACAAAATGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTG
TAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAA
ACGGAGGGTCTACAAGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGA
GAGAGAAGAACAGAATCTAAGGAAAGAATCCAAGGATAAGGAGGGTCCAG
AAGTGTACGGAATGTTGAAGGAAGGAATTGGGTTCAAGGATTACCTACAT
GGACCAATGGATGCAGGAACAAGGCTTAAGGTCAAATTCAGGACCGGGGA
CATAGGCCTCCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAG
ACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCAT
GTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGAC
TGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGA
ATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAA
AAGGCGGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCGC

Coding sequence (CDS) from alignment at Scaffold_82:192910..194064+

>EsuBft961_8a-0001 ID=EsuBft961_8a-0001|Name=EsuBft961_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=615bp|location=Sequence derived from alignment at Scaffold_82:192910..194064+ (Ectocarpus subulatus male Bft15b)
ATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAA
GTGGGCAAACAAAATGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTG
TAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAA
ACGGAGGGTCTACAAGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGA
GAGAGAAGAACAGAATCTAAGGAAAGAATCCAAGGATAAGGAGGGTCCAG
AAGTGTACGGAATGTTGAAGGAAGGAATTGGGTTCAAGGATTACCTACAT
GGACCAATGGATGCAGGAACAAGGCTTAAGGTCAAATTCAGGACCGGGGA
CATAGGCCTCCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAG
ACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCAT
GTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGAC
TGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGA
ATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAA
AAGGCGGGAAGNNNN