EsuBft1192_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1192_2a-0001
Unique NameEsuBft1192_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:183359..184810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1192_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length130
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_2aEsuBft1192_2aEctocarpus subulatus male Bft15bgeneScaffold_82 183359..184810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_2a-0001-exonEsuBft1192_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 183359..184607 -
EsuBft1192_2a-0001-exonagat-exon-21826Ectocarpus subulatus male Bft15bexonScaffold_82 184756..184810 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_2a-0001-exonagat-three_prime_utr-1836Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 183359..184440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_2a-0001-cdsEsuBft1192_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 184441..184607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1192_2a-0001EsuBft1192_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 184441..184810 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1192_2a-0001 ID=EsuBft1192_2a-0001|Name=EsuBft1192_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1304bp|location=Sequence derived from alignment at Scaffold_82:183359..184810- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCGCATGTGGGTTCAAACTTGCTTCGACGGTGTGGGGGACGCGCG
GAAAGGTGGGAACCTGGACGCTGAAGTGGCGTACGGCAACCATCCTAGCG
CGTTACTGCACAGAGATCGGATCACAGACAAAGTGGTATCGGACGTGATC
TTGGGGCGTGCGTTGGTTTTCGATGTTCGGTTTNCACGTTCACCTCTGGC
GTGCCCATCCGTACCAGCGTAAATCACGATACATACTTTGATCAAGCACC
CGAATGCCTCTTGGGTCATGTATTGAGTGATATTCTGAAACGGGTGCTTT
ATTTGCGACAAGTACACGGCGTGTCGTTGGAAATTCTCATCTGCCGCATT
GATGTGAAACAAGCCTTCCGACAAATGCCGGTGGATCCGTCTCGGGCATC
GGTTTTTGGGTACACTATCGGCGATCACGCGGTTGTTGACCTACGGTGTC
AATTTGGATGGCGGTCGAGCCCAGGGTTTTGGTCCTTGTTCTCGTCCGCG
TTGGAACACTCACACACACACACTACATTTCAAGACGCGTCCGTCTCTCC
CGCCGGTGCTGCGGCTGTGCAGCATGTTCAAGTAGTGTCCCCACCAGACG
AAAGTACAGCGGTGCCGTTACCTGTTGATTGCCAGACTATTGTGGGCGAC
GGGGCGTTTGCTGGTTCTCCGTTTTTCGTGCGATACTACGTTGATGATGG
CGTGTTGATTGAAGGGAGATTTTTCGCTGATGGCCGCCGATGTTTGCGCG
CGGTGCGTTCTCTCGCTACGGATCACTTTCGTCTGCTGGGAGAGAGAGGC
CCAGCAGACCCGCCGTTGTTGTCGCAAGGAAAAATCACAGATTTCGCTAC
TCGTTTGGATGTGTTGGGTTGGACATTGGACACTCAGCAACTCACGATTA
CTATGACCGACACGAAACAGCAGAAACTGGGACGCATATTGGCTGCGTGG
CCCGCGACGCGGAAAGTCGCTACAGCTCGTCAAGTAGCTGAGTTGACAGG
GTTTCTTATGCACGTTTCGTTCGTGTTGCGGCCAGGAAAGTTCTTTGTGG
GGCGCCTTTTATCCGCGGTCGGGATGCCCGCTTCGTCTACTTTCGCGTCC
CAAGTGCCAAACCCGAACAGACGTGTAGTGCTGGGTCCATTATTCCACGA
TGACCTCGAATTTTGGCGGTGGTTCCACAGGCGTGGTCTCTCGTTGCGCG
GCGGAAGTTTGTGTGCACCCATGTACAATATTTTGGAACGCCCGCCTGCA
CTATCCGTGTTCACCGATGCGTCTAAGCAAGCAATTGGAGGGTATTGTTT
GCAA
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protein sequence of EsuBft1192_2a-0001

>EsuBft1192_2 ID=EsuBft1192_2|Name=EsuBft1192_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=73bp
MWRMWVQTCFDGVGDARKGGNLDAEVAYGNHPSALLHRDRITDKVVSDVI
LGRALVFDVRFXRSPLACPSVPA
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mRNA from alignment at Scaffold_82:183359..184810-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1192_2a-0001 ID=EsuBft1192_2a-0001|Name=EsuBft1192_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1452bp|location=Sequence derived from alignment at Scaffold_82:183359..184810- (Ectocarpus subulatus male Bft15b)
ATGTGGCGCATGTGGGTTCAAACTTGCTTCGACGGTGTGGGGGACGCGCG
GAAAGGTTCGTCGCCGCTGTTGGTCAGAAGTTCTTTCTGCCCCATGTCGA
TGTGATGCGTGTCAGGCGCATTTTGGAGAAGTGAAAAAGGTTCCTCGAGT
TGGTCAACTTCTGAGATCGTTGTCTCCGGGTGCGCCGGTTGACGTGGGCT
TAGGTGGGAACCTGGACGCTGAAGTGGCGTACGGCAACCATCCTAGCGCG
TTACTGCACAGAGATCGGATCACAGACAAAGTGGTATCGGACGTGATCTT
GGGGCGTGCGTTGGTTTTCGATGTTCGGTTTNCACGTTCACCTCTGGCGT
GCCCATCCGTACCAGCGTAAATCACGATACATACTTTGATCAAGCACCCG
AATGCCTCTTGGGTCATGTATTGAGTGATATTCTGAAACGGGTGCTTTAT
TTGCGACAAGTACACGGCGTGTCGTTGGAAATTCTCATCTGCCGCATTGA
TGTGAAACAAGCCTTCCGACAAATGCCGGTGGATCCGTCTCGGGCATCGG
TTTTTGGGTACACTATCGGCGATCACGCGGTTGTTGACCTACGGTGTCAA
TTTGGATGGCGGTCGAGCCCAGGGTTTTGGTCCTTGTTCTCGTCCGCGTT
GGAACACTCACACACACACACTACATTTCAAGACGCGTCCGTCTCTCCCG
CCGGTGCTGCGGCTGTGCAGCATGTTCAAGTAGTGTCCCCACCAGACGAA
AGTACAGCGGTGCCGTTACCTGTTGATTGCCAGACTATTGTGGGCGACGG
GGCGTTTGCTGGTTCTCCGTTTTTCGTGCGATACTACGTTGATGATGGCG
TGTTGATTGAAGGGAGATTTTTCGCTGATGGCCGCCGATGTTTGCGCGCG
GTGCGTTCTCTCGCTACGGATCACTTTCGTCTGCTGGGAGAGAGAGGCCC
AGCAGACCCGCCGTTGTTGTCGCAAGGAAAAATCACAGATTTCGCTACTC
GTTTGGATGTGTTGGGTTGGACATTGGACACTCAGCAACTCACGATTACT
ATGACCGACACGAAACAGCAGAAACTGGGACGCATATTGGCTGCGTGGCC
CGCGACGCGGAAAGTCGCTACAGCTCGTCAAGTAGCTGAGTTGACAGGGT
TTCTTATGCACGTTTCGTTCGTGTTGCGGCCAGGAAAGTTCTTTGTGGGG
CGCCTTTTATCCGCGGTCGGGATGCCCGCTTCGTCTACTTTCGCGTCCCA
AGTGCCAAACCCGAACAGACGTGTAGTGCTGGGTCCATTATTCCACGATG
ACCTCGAATTTTGGCGGTGGTTCCACAGGCGTGGTCTCTCGTTGCGCGGC
GGAAGTTTGTGTGCACCCATGTACAATATTTTGGAACGCCCGCCTGCACT
ATCCGTGTTCACCGATGCGTCTAAGCAAGCAATTGGAGGGTATTGTTTGC
AA
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Coding sequence (CDS) from alignment at Scaffold_82:183359..184810-

>EsuBft1192_2a-0001 ID=EsuBft1192_2a-0001|Name=EsuBft1192_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=222bp|location=Sequence derived from alignment at Scaffold_82:183359..184810- (Ectocarpus subulatus male Bft15b)
ATGTGGCGCATGTGGGTTCAAACTTGCTTCGACGGTGTGGGGGACGCGCG
GAAAGGTGGGAACCTGGACGCTGAAGTGGCGTACGGCAACCATCCTAGCG
CGTTACTGCACAGAGATCGGATCACAGACAAAGTGGTATCGGACGTGATC
TTGGGGCGTGCGTTGGTTTTCGATGTTCGGTTTNCACGTTCACCTCTGGC
GTGCCCATCCGTACCAGCGTAA
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