EsuBft976_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft976_4a-0001
Unique NameEsuBft976_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_78contigScaffold_78:73843..76908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LKV4
ProteomeIdEsuBft976_4
Protein domainsIPR011990
Protein domainsPF13414
Protein domainsSSF48452
Protein domainsIPR013026
Ownerapollo_admin@sb-roscoff.fr
Notebardet-biedl syndrome 4 protein os:homo sapiens gn:bbs4 pe:1 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length949
Hectar predicted targeting categoryother localisation
Evalue1.98e-49
EggNOG OGsCOG0457@1|root,KOG1124@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameBBS4
KEGG koko:K11447,ko:K16531
KEGG Pathwayko05202,map05202
GOsGO:0000003,GO:0000086,GO:0000226,GO:0000242,GO:0000278,GO:0000281,GO:0000288,GO:0000291,GO:0000785,GO:0000910,GO:0000956,GO:0001085,GO:0001103,GO:0001654,GO:0001708,GO:0001750,GO:0001754,GO:0001764,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001895,GO:0001917,GO:0001947,GO:0002009,GO:0003006,GO:0003007,GO:0003008,GO:0003013,GO:0003073,GO:0003085,GO:0003143,GO:0003352,GO:0003356,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005929,GO:0006139,GO:0006325,GO:0006401,GO:0006402,GO:0006464,GO:0006482,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007606,GO:0007608,GO:0007610,GO:0008015,GO:0008064,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008214,GO:0008217,GO:0009056,GO:0009057,GO:0009506,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009892,GO:0009933,GO:0009934,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0010638,GO:0010639,GO:0012505,GO:0014020,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016331,GO:0016358,GO:0016462,GO:0016477,GO:0016569,GO:0016570,GO:0016577,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019216,GO:0019221,GO:0019222,GO:0019439,GO:0019538,GO:0019953,GO:0021537,GO:0021543,GO:0021544,GO:0021591,GO:0021756,GO:0021761,GO:0021766,GO:0021915,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030054,GO:0030154,GO:0030182,GO:0030534,GO:0030832,GO:0030833,GO:0030837,GO:0030900,GO:0031023,GO:0031090,GO:0031175,GO:0031253,GO:0031333,GO:0031344,GO:0031346,GO:0031410,GO:0031514,GO:0031667,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032095,GO:0032096,GO:0032098,GO:0032099,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032231,GO:0032271,GO:0032272,GO:0032391,GO:0032400,GO:0032401,GO:0032402,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032535,GO:0032870,GO:0032879,GO:0032886,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033210,GO:0033365,GO:0034097,GO:0034260,GO:0034451,GO:0034452,GO:0034453,GO:0034454,GO:0034464,GO:0034504,GO:0034613,GO:0034641,GO:0034655,GO:0034708,GO:0035050,GO:0035097,GO:0035148,GO:0035176,GO:0035239,GO:0035295,GO:0035327,GO:0035845,GO:0035869,GO:0036064,GO:0036211,GO:0038108,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040018,GO:0042221,GO:0042461,GO:0042462,GO:0042592,GO:0042995,GO:0043005,GO:0043009,GO:0043014,GO:0043086,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043473,GO:0043928,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044320,GO:0044321,GO:0044380,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044451,GO:0044459,GO:0044463,GO:0044464,GO:0044666,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0045165,GO:0045185,GO:0045444,GO:0045494,GO:0045724,GO:0045776,GO:0045927,GO:0046483,GO:0046530,GO:0046548,GO:0046700,GO:0046907,GO:0048232,GO:0048468,GO:0048487,GO:0048507,GO:0048509,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048532,GO:0048562,GO:0048568,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048609,GO:0048638,GO:0048639,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048871,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050893,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051270,GO:0051276,GO:0051301,GO:0051302,GO:0051336,GO:0051346,GO:0051457,GO:0051492,GO:0051493,GO:0051494,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051651,GO:0051656,GO:0051674,GO:0051703,GO:0051704,GO:0051705,GO:0051716,GO:0051726,GO:0051875,GO:0051904,GO:0051905,GO:0055044,GO:0055087,GO:0060170,GO:0060249,GO:0060255,GO:0060271,GO:0060295,GO:0060296,GO:0060322,GO:0060324,GO:0060429,GO:0060491,GO:0060562,GO:0060606,GO:0060612,GO:0060613,GO:0060632,GO:0061371,GO:0061448,GO:0061512,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070076,GO:0070491,GO:0070727,GO:0070887,GO:0070925,GO:0070988,GO:0071310,GO:0071345,GO:0071495,GO:0071539,GO:0071557,GO:0071704,GO:0071840,GO:0071944,GO:0072175,GO:0072359,GO:0072393,GO:0072595,GO:0072698,GO:0080090,GO:0090066,GO:0090304,GO:0090596,GO:0097458,GO:0097499,GO:0097708,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098590,GO:0098791,GO:0110020,GO:0110053,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:1901360,GO:1901361,GO:1901564,GO:1901575,GO:1902017,GO:1902019,GO:1902115,GO:1902117,GO:1902494,GO:1902855,GO:1902903,GO:1902904,GO:1903047,GO:1903546,GO:1905508,GO:1905515,GO:1990234,GO:2000145
Descriptioncellular component assembly
COG categoryO
BRITEko00000,ko00001,ko01000,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft976_4aEsuBft976_4aEctocarpus subulatus male Bft15bgeneScaffold_78 73843..76908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_4a-0001EsuBft976_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_78 74434..76385 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_4a-0001-exonagat-exon-98445Ectocarpus subulatus male Bft15bexonScaffold_78 73843..73952 +
EsuBft976_4a-0001-exonEsuBft976_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_78 74394..74499 +
EsuBft976_4a-0001-exonagat-exon-98444Ectocarpus subulatus male Bft15bexonScaffold_78 74973..75098 +
EsuBft976_4a-0001-exonagat-exon-98446Ectocarpus subulatus male Bft15bexonScaffold_78 76302..76908 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_4a-0001-exonagat-five_prime_utr-15424Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_78 73843..73952 +
EsuBft976_4a-0001-exonagat-five_prime_utr-15425Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_78 74394..74433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_4a-0001-cdsEsuBft976_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_78 74434..74499 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_4a-0001-exonagat-three_prime_utr-23695Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_78 76386..76908 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft976_4a-0001 ID=EsuBft976_4a-0001|Name=EsuBft976_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=949bp|location=Sequence derived from alignment at Scaffold_78:73843..76908+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCTAAGGCGCGCTCTGTACCTGGACCCGTTCGAGTGGATCGTGGCCTA
CAACCTGGGGTTGGTGCACCTCAGCACTTCGCAGTACGCCTCTGCCTTTC
ACCACTTGAGTGCGGCCATCAACCTCAAGCCCGACTTCGCGGCGTCCTAC
ATGTACTTGGCGATCACTCTGGCTAGATTGGAGGACTTCGACAACGCCTG
CAGTGCCTATGACAAGGCTTTGGAGCTAGATGACGGCGGTGGCGACTACC
TGACCCATCTCAATTACGCGGTGACCCTGCTCAACAACGACGAGCAGGAG
AGAGCCGCTGAACACTATGCCAGCTTTAAGAAAATATTTGAGGCTCTCGA
TCCCGATACGGAGAGGGACCAGGAGGTGGTAGCAAGCAGTCAAGCGCTGG
AAAATTCCCTTGGAGCGTCCTCGTGACAAACAGCAGTGACGTGGTTGGTC
ATGAGCGTGTGGTTGTTTTGTGTGGTGGTGCTGTTGGCATTGTCACATTC
TGGGTTACGCTAGAATAATCGCAACGTAGGTTACGACATAATTATGGTTC
TTGTGGTGATGATGTTCCTGTACTTGCCGGATGTTGGTCATGTTTGAGGC
GTTACCGCCGTTGGTTGCTGTTGCAGACTTTGTCGTTGGCCTCCATTTCT
TGAAGTCGTCACCGTTGTGGTAACAGCATTTGAAGCGTCGTTGCGGTCAT
TGTTGCATTGGTTGTTTTCGGTGGTGTTGGTGTGGCGTGGCGGCGTTGTC
GGTTCATGTTTGGTGCGGTGTGATTGTTGTTGCAGAGTTGTTGGTGGCGA
CACAGTTGACACTAATGTTAGCGTTGGTACAAGAGGGACTACAGTACGAT
GTCGCACGTGTTGCTGGCTGACCGAGTAGTCTAGTGGGTAAGCCTGTCTA
ACCAAGGATGCATGCACGGCTTCGAATCACAGCTGGTCACTTCAAAAGC
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protein sequence of EsuBft976_4a-0001

>EsuBft976_4 ID=EsuBft976_4|Name=EsuBft976_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=91bp
MYLAITLARLEDFDNACSAYDKALELDDGGGDYLTHLNYAVTLLNNDEQE
RAAEHYASFKKIFEALDPDTERDQEVVASSQALENSLGASS
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mRNA from alignment at Scaffold_78:73843..76908+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft976_4a-0001 ID=EsuBft976_4a-0001|Name=EsuBft976_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3066bp|location=Sequence derived from alignment at Scaffold_78:73843..76908+ (Ectocarpus subulatus male Bft15b)
TGTCTAAGGCGCGCTCTGTACCTGGACCCGTTCGAGTGGATCGTGGCCTA
CAACCTGGGGTTGGTGCACCTCAGCACTTCGCAGTACGCCTCTGCCTTTC
ACCACTTGAGGTCTGTCAATAATTCCATCGTTTCTTGTCGCCCCGTCGCG
GAAAAATGTCAAACGTTCTTCTTGCCTTCCTTCCCTAGCAACGAAAGTTG
TCGTGATTGTTCTCAGGTCATTACACAAGGTGCATTGGTATGCATTTAGC
CGTTTGTTCAAGGTACGACCATCGCGCGCTATTACATGAATCGTTTTTGT
GCCGTCATTGGACCCCTTCCATTGCATAGGTTTCCACCTGTCTGGCTATC
AGTGTCGTTCTCTGCCTCCTTCGCTCAGCCTGTGTCTCTGTCTCTGTCTC
TGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTG
TCTCTGTCTCTGTCTGTCTGTCTGTCGCTCTCTCTCTCTGTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCATCTTCTCTCTGATGACGGACATAAA
GTGCGGCCATCAACCTCAAGCCCGACTTCGCGGCGTCCTACATGTACTTG
GCGATCACTCTGGCTAGATTGGAGGACTTCGACAACGCCTGCAGTGCCTA
TGACAAGGTTAAACACGACCAAGAACTGCAGACCTTCCATAGGATAAAAT
AGCACAACCTGAACATCTTACCCTTGTTGTACAGTGCAGTGGTACAGAAG
GCACCAGTTTTCATCTTGACTCTCACCTGCAGTATGACAACAACAAGAAC
AACAACACCTCTAGGACGGTTACAACGTGAACCATTTTGACCTGAACGTT
CCCATTCCGCAATTGAGGCCACGAGCTCACGGCTACGCACTTTGTGCCAC
CTCTTTAAGTCTGAGTGCTTTTCTTAGTACTCATACATGCCACTAGAACA
GGACGTGGGGGCTTTACGCTAAGGTCCACGAGGCTTTACTATATCAATTC
CACCTATGTAATTCGGGTCCACGGCCGGTTACAAGAATTCAGAAAGGACA
TAGCTGTAACAATGCGACCGAGAGTTGCCGCTTAGAATTTAGACAAGCAC
GCTACACCGGTTTTGTGTCATTTCTTCCAGGCTTTGGAGCTAGATGACGG
CGGTGGCGACTACCTGACCCATCTCAATTACGCGGTGACCCTGCTCAACA
ACGACGAGCAGGAGAGAGCCGCTGAACACTATGCCAGCTTTAAGAAAATA
TTTGAGGTGGGTCTGTATGCTGGGAAAATTCATACGCGAGTTTGCGCTAT
TTGGTGATGACGAACGGGAGTTGAGTATTGAAATTATGCTCGCTGCCAAT
GTCGTTTCCGCGTTGTCCTCGAGTGCCCTGTCTGGCCTGTACCTAAGCAC
CTCTTGACCACCGATACAACTGGTCTTCAGGATAGAGAAATGAAAATGTC
TAGGGTCACATCGCGGGACGGGTTGTGGGAATGGGGTTCCTTTCCTCATG
GTCCTTCAGCCAACGGCTGCCAATTAGGCAGCAAGTCAAAGGTAGGTAGA
GCTCTTCCGGTTGAAGTTTTTTTCGGGGTATGTAATCATCATTGCGGATG
TGCTCAAAATGGAACACGGCTTGTATTGGCATCAGCTAGAAAATAAAAAT
TGCGCCCGTCTCCGTCGCGACTGTTTCGGTTTCGGTTTCACCGAAATAAC
CAAAGGGCGACATGACAGGATTCAATCGGGTAACCGGATGACCGATATAT
TCCAAATTCGGCTTAATTTTTGCGTAAAGCCGGATTCAGCTTAACCGGAG
ACCCGTTTTTCTGTTTTCGGTCTGACCGGAGAGCTTGTTTCGATCAACTG
GTTAAATCTGTTTCGTTTTTTTCATGATTTATCAGATTCAGTATAGCCTA
ACTGGGTTACCGTTTTAACCGGATCAACCTTTTTTGCTACCGCTTTAAAG
CTTGCGTAAATGGTTGGCCGGACTCGGTTTAGCAGGATAATGTACCCGTT
AGTATATGATACTGGTTATCCAGAGGTAAAGGAGAATTATTCACGGGTTT
GACAACCTCCCATTCAGGTTGAAAAGGCGGGAAGTAATATCGGCAAGATA
GATGGGTAAGGGAAACATGTCTATTTTGAGCCACCTTTGGCAATGTAGGA
GGGAACGATTGACCCCCTGTTTCGGTCCTGTGGGAACAATGCTCCGTCAT
CTCGAGGACCCGTGGTGAATGGTCGAACCGCTAGAGAATGCAAAACAGAA
GGGCACGCCCCCCCCACCCCGTTCATCCACAGCGATCACCCCCACTCACC
CGATTGGTTCGCATTTTGCCCCTCTGTTCGCGTTCGTGTTGAACGACGCA
TAATTCGCACAGTGACCAACGATCTAATACCCAGCAATACCCACCGATGG
ATCGACCAGTCACTCATTTTGATGGATTGACCTACTGTACCAACGAATGC
TTCTTGCAGGCTCTCGATCCCGATACGGAGAGGGACCAGGAGGTGGTAGC
AAGCAGTCAAGCGCTGGAAAATTCCCTTGGAGCGTCCTCGTGACAAACAG
CAGTGACGTGGTTGGTCATGAGCGTGTGGTTGTTTTGTGTGGTGGTGCTG
TTGGCATTGTCACATTCTGGGTTACGCTAGAATAATCGCAACGTAGGTTA
CGACATAATTATGGTTCTTGTGGTGATGATGTTCCTGTACTTGCCGGATG
TTGGTCATGTTTGAGGCGTTACCGCCGTTGGTTGCTGTTGCAGACTTTGT
CGTTGGCCTCCATTTCTTGAAGTCGTCACCGTTGTGGTAACAGCATTTGA
AGCGTCGTTGCGGTCATTGTTGCATTGGTTGTTTTCGGTGGTGTTGGTGT
GGCGTGGCGGCGTTGTCGGTTCATGTTTGGTGCGGTGTGATTGTTGTTGC
AGAGTTGTTGGTGGCGACACAGTTGACACTAATGTTAGCGTTGGTACAAG
AGGGACTACAGTACGATGTCGCACGTGTTGCTGGCTGACCGAGTAGTCTA
GTGGGTAAGCCTGTCTAACCAAGGATGCATGCACGGCTTCGAATCACAGC
TGGTCACTTCAAAAGC
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Coding sequence (CDS) from alignment at Scaffold_78:73843..76908+

>EsuBft976_4a-0001 ID=EsuBft976_4a-0001|Name=EsuBft976_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=276bp|location=Sequence derived from alignment at Scaffold_78:73843..76908+ (Ectocarpus subulatus male Bft15b)
ATGTACTTGGCGATCACTCTGGCTAGATTGGAGGACTTCGACAACGCCTG
CAGTGCCTATGACAAGGCTTTGGAGCTAGATGACGGCGGTGGCGACTACC
TGACCCATCTCAATTACGCGGTGACCCTGCTCAACAACGACGAGCAGGAG
AGAGCCGCTGAACACTATGCCAGCTTTAAGAAAATATTTGAGGCTCTCGA
TCCCGATACGGAGAGGGACCAGGAGGTGGTAGCAAGCAGTCAAGCGCTGG
AAAATTCCCTTGGAGCGTCCTCGTGA
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