EsuBft976_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft976_7a-0001
Unique NameEsuBft976_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_78contigScaffold_78:65803..68195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft976_7
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length239
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft976_7aEsuBft976_7aEctocarpus subulatus male Bft15bgeneScaffold_78 65803..68195 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_7a-0001-exonEsuBft976_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_78 65803..68195 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_7a-0001-exonagat-three_prime_utr-23699Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_78 65803..67625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_7a-0001-cdsEsuBft976_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_78 67626..68168 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_7a-0001-exonagat-five_prime_utr-15428Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_78 68169..68195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_7a-0001EsuBft976_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_78 67626..68168 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft976_7a-0001 ID=EsuBft976_7a-0001|Name=EsuBft976_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2393bp|location=Sequence derived from alignment at Scaffold_78:65803..68195- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCAACTTCACTTCACGTCGAACTCATGAAGTCCTCTTTGGTATTGAT
CTGCGCTGCCGCCCTCTCCCTGTCCAATGGCGTGAACGGCTTCTTCGTGC
CGGCCGCTGGGAGCCTGGTCGGTGGAGCGTCCTCCGCCTCTCGTGCGTCC
CACAGCATCAGCATGAGTAGCATCGCTCACGGCGCCCGGTGCTCATGCGC
CTCCTGCGCTGGTGTCCACGGGAGATCGTGCACCTGCCCCTCGTGCTCGT
CGACGGGAGTCTCCAGGCGGTCCTGCAGCGCCGGTTGCCGTTGTGCCGGT
TGCTCAGTGCGCATGAAGGCGCACCGCGACGGTGAGGACACCACCTCGCC
TGGGGGGCATAGGGCTTCGTGCGAGTGCCCCGATTGCGGCGTCCTCAAGA
GCCTCTCCAGAAGCAGGCGGGGAGCTTCTTCCGTCACGGTGATGAGCATG
GGAGGAGGAGAGGGAGATCGGGCGCTGAGGCAAAGGCTGGTGGATGAGCC
CGAGTCGGTACAATTTGAGGACACCATGGCGGCGATCGCGGAAGGCTTCG
ACTACGTGCCTAAGCGGTGAGAACAGGACAGGCAGTAGCAGCAACAGCAG
TGTCTAGCTGTGGGCAACGTCTGCTTTGAGAGTACTAGGGCACGCGTGAA
GGAGGAGCAGGTGCAACGTGTGACTTTGTCTTGCGGTTGAAGATGCTGCC
CGGTTTCCTATGCATACGCTGCTGCACCGTCCGTGTCTTCCGTCCGCATG
TCCGCAAGCGATTATGTACCGGAGCCGTGCCCATGTTGAACGTTCTGTCC
CAACCCCATCGCAACTGTGGGCAGCATGTTGCAGATTTTGTCGTGGCAGC
TAACGGTTCCCCACAGCGGGGCTTGCCAGCCTCCATCAAACACCAAACAC
GCCAATGGATTCCATACGTGTGCCCAAGAATCCATACGTGTCAGACGGGA
TCTATACGCGTGAGACGGTATCTGTACGTCAGATGAAACAAAAAAAACAA
AACAGGTGCGCGCATGGCGCATGAAGTGTTTGTGCGTGTGATGGCACCAC
GGTTCCCAAAAATGTGGAGAACGGCATGATTTTATTGCTATTGCGCACCA
GTATCGGTGTTAACGCACCCGGTGCCAACGATATTAAACCTGCTTGGGAC
GTCAATATTTGCGTGCTTCCGCAAGGTACTGGTACCCTGGTACCCTCTGA
GCCACGTGTTGAACTGTATGGAAAGCACGGCTGAGGGTCCGGTATGTACC
AATTGGGGCGCCAGTCCTTCCATGTACTTTTATGATGTCGTATCGTTGAG
GTGTGCGCTTACAGTAAGGATCAAGGTTTTTCTATTGTAATCCGTACATC
GAACACAGCACACATCCCGCACCTCCCACCAACCGAACAAGGAGTTGGTA
AACAACAGTACTATCATTGTATATGGGTTTGAGGGAGACAAAGGAAGACA
GAGGGAAGCACCAGCCAACAGTTGAGGGGCTTGCGACCAACAAGGAGGTT
GGAAGAAAAACGATGCCGCACCGTATACCTTTCCCAGCCAGGAACCACAG
CGCCTGTTGTCTTTGGCACACGCTACGCCAAACTCGCATCAGCCGCTTCA
TGTTGAGTACCGTTTCACGCACATAAACGGTAGTCCTACCAGAAAACGCC
TTTGCTCGTTTCTTTGAGTATCGCACCTATGGGTGTCATCGCACCGGGGT
GTTACTCAGCACCGTGAACTGGCCACTGTGATTTATTCCGTATCGCACCC
ATCGATGTCATCGCACGGAGGGTGCGTTGGGAAGCTAACAACGAAATTGC
TCGGTAGTTGTATCTCCGCACCGTTATCGGTGTTGTGGCACTGGGGAAGG
TAAACTATAAAGATAGGTGTGGGGCTTGTGTCTCCTGAACCAACACGCCT
CCTTTCATCCCTGTAACGTCCATACGTCAGAGAATCCCTCCGACTGGACG
TGAGGACAGCTTGCTCATCGCAAGAGTAGAGAGCTCGTAACTCTCCATCG
ACTGCGCTCTAGACCAAATCCCATACAGGAATGATTCAAAAACTGGTCGC
ACCCCGATGCCATCACACGCACATTTACGGTAGGGGAGGATGAAGGGGTG
CTTCCGTTTTTGCTTCTCTTTTCTTATCATGACACAACGAAAAACCAAGA
TAGGAATGATGATGATCAAGAATGGTCGCACCCCGATGCCATAACACGCA
CATTTACGGTAGGGAAGGATGGAGGGTTGCTTCCGTTTTTCTGATCATGA
CACAACGAAACTATCTCTATCCACAGAAAAGAGTCTTCGATAGATTTAAT
ATCAATGCGTTTAGAGCGTCAGCGAAGGCGACCAATATTTTTACGATTTC
CCATGCAGCATACGGCGATATATTTTCACATTCATTGATCACT
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protein sequence of EsuBft976_7a-0001

>EsuBft976_7 ID=EsuBft976_7|Name=EsuBft976_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=180bp
MKSSLVLICAAALSLSNGVNGFFVPAAGSLVGGASSASRASHSISMSSIA
HGARCSCASCAGVHGRSCTCPSCSSTGVSRRSCSAGCRCAGCSVRMKAHR
DGEDTTSPGGHRASCECPDCGVLKSLSRSRRGASSVTVMSMGGGEGDRAL
RQRLVDEPESVQFEDTMAAIAEGFDYVPKR
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mRNA from alignment at Scaffold_78:65803..68195-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft976_7a-0001 ID=EsuBft976_7a-0001|Name=EsuBft976_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2393bp|location=Sequence derived from alignment at Scaffold_78:65803..68195- (Ectocarpus subulatus male Bft15b)
CTGTCAACTTCACTTCACGTCGAACTCATGAAGTCCTCTTTGGTATTGAT
CTGCGCTGCCGCCCTCTCCCTGTCCAATGGCGTGAACGGCTTCTTCGTGC
CGGCCGCTGGGAGCCTGGTCGGTGGAGCGTCCTCCGCCTCTCGTGCGTCC
CACAGCATCAGCATGAGTAGCATCGCTCACGGCGCCCGGTGCTCATGCGC
CTCCTGCGCTGGTGTCCACGGGAGATCGTGCACCTGCCCCTCGTGCTCGT
CGACGGGAGTCTCCAGGCGGTCCTGCAGCGCCGGTTGCCGTTGTGCCGGT
TGCTCAGTGCGCATGAAGGCGCACCGCGACGGTGAGGACACCACCTCGCC
TGGGGGGCATAGGGCTTCGTGCGAGTGCCCCGATTGCGGCGTCCTCAAGA
GCCTCTCCAGAAGCAGGCGGGGAGCTTCTTCCGTCACGGTGATGAGCATG
GGAGGAGGAGAGGGAGATCGGGCGCTGAGGCAAAGGCTGGTGGATGAGCC
CGAGTCGGTACAATTTGAGGACACCATGGCGGCGATCGCGGAAGGCTTCG
ACTACGTGCCTAAGCGGTGAGAACAGGACAGGCAGTAGCAGCAACAGCAG
TGTCTAGCTGTGGGCAACGTCTGCTTTGAGAGTACTAGGGCACGCGTGAA
GGAGGAGCAGGTGCAACGTGTGACTTTGTCTTGCGGTTGAAGATGCTGCC
CGGTTTCCTATGCATACGCTGCTGCACCGTCCGTGTCTTCCGTCCGCATG
TCCGCAAGCGATTATGTACCGGAGCCGTGCCCATGTTGAACGTTCTGTCC
CAACCCCATCGCAACTGTGGGCAGCATGTTGCAGATTTTGTCGTGGCAGC
TAACGGTTCCCCACAGCGGGGCTTGCCAGCCTCCATCAAACACCAAACAC
GCCAATGGATTCCATACGTGTGCCCAAGAATCCATACGTGTCAGACGGGA
TCTATACGCGTGAGACGGTATCTGTACGTCAGATGAAACAAAAAAAACAA
AACAGGTGCGCGCATGGCGCATGAAGTGTTTGTGCGTGTGATGGCACCAC
GGTTCCCAAAAATGTGGAGAACGGCATGATTTTATTGCTATTGCGCACCA
GTATCGGTGTTAACGCACCCGGTGCCAACGATATTAAACCTGCTTGGGAC
GTCAATATTTGCGTGCTTCCGCAAGGTACTGGTACCCTGGTACCCTCTGA
GCCACGTGTTGAACTGTATGGAAAGCACGGCTGAGGGTCCGGTATGTACC
AATTGGGGCGCCAGTCCTTCCATGTACTTTTATGATGTCGTATCGTTGAG
GTGTGCGCTTACAGTAAGGATCAAGGTTTTTCTATTGTAATCCGTACATC
GAACACAGCACACATCCCGCACCTCCCACCAACCGAACAAGGAGTTGGTA
AACAACAGTACTATCATTGTATATGGGTTTGAGGGAGACAAAGGAAGACA
GAGGGAAGCACCAGCCAACAGTTGAGGGGCTTGCGACCAACAAGGAGGTT
GGAAGAAAAACGATGCCGCACCGTATACCTTTCCCAGCCAGGAACCACAG
CGCCTGTTGTCTTTGGCACACGCTACGCCAAACTCGCATCAGCCGCTTCA
TGTTGAGTACCGTTTCACGCACATAAACGGTAGTCCTACCAGAAAACGCC
TTTGCTCGTTTCTTTGAGTATCGCACCTATGGGTGTCATCGCACCGGGGT
GTTACTCAGCACCGTGAACTGGCCACTGTGATTTATTCCGTATCGCACCC
ATCGATGTCATCGCACGGAGGGTGCGTTGGGAAGCTAACAACGAAATTGC
TCGGTAGTTGTATCTCCGCACCGTTATCGGTGTTGTGGCACTGGGGAAGG
TAAACTATAAAGATAGGTGTGGGGCTTGTGTCTCCTGAACCAACACGCCT
CCTTTCATCCCTGTAACGTCCATACGTCAGAGAATCCCTCCGACTGGACG
TGAGGACAGCTTGCTCATCGCAAGAGTAGAGAGCTCGTAACTCTCCATCG
ACTGCGCTCTAGACCAAATCCCATACAGGAATGATTCAAAAACTGGTCGC
ACCCCGATGCCATCACACGCACATTTACGGTAGGGGAGGATGAAGGGGTG
CTTCCGTTTTTGCTTCTCTTTTCTTATCATGACACAACGAAAAACCAAGA
TAGGAATGATGATGATCAAGAATGGTCGCACCCCGATGCCATAACACGCA
CATTTACGGTAGGGAAGGATGGAGGGTTGCTTCCGTTTTTCTGATCATGA
CACAACGAAACTATCTCTATCCACAGAAAAGAGTCTTCGATAGATTTAAT
ATCAATGCGTTTAGAGCGTCAGCGAAGGCGACCAATATTTTTACGATTTC
CCATGCAGCATACGGCGATATATTTTCACATTCATTGATCACT
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Coding sequence (CDS) from alignment at Scaffold_78:65803..68195-

>EsuBft976_7a-0001 ID=EsuBft976_7a-0001|Name=EsuBft976_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=543bp|location=Sequence derived from alignment at Scaffold_78:65803..68195- (Ectocarpus subulatus male Bft15b)
ATGAAGTCCTCTTTGGTATTGATCTGCGCTGCCGCCCTCTCCCTGTCCAA
TGGCGTGAACGGCTTCTTCGTGCCGGCCGCTGGGAGCCTGGTCGGTGGAG
CGTCCTCCGCCTCTCGTGCGTCCCACAGCATCAGCATGAGTAGCATCGCT
CACGGCGCCCGGTGCTCATGCGCCTCCTGCGCTGGTGTCCACGGGAGATC
GTGCACCTGCCCCTCGTGCTCGTCGACGGGAGTCTCCAGGCGGTCCTGCA
GCGCCGGTTGCCGTTGTGCCGGTTGCTCAGTGCGCATGAAGGCGCACCGC
GACGGTGAGGACACCACCTCGCCTGGGGGGCATAGGGCTTCGTGCGAGTG
CCCCGATTGCGGCGTCCTCAAGAGCCTCTCCAGAAGCAGGCGGGGAGCTT
CTTCCGTCACGGTGATGAGCATGGGAGGAGGAGAGGGAGATCGGGCGCTG
AGGCAAAGGCTGGTGGATGAGCCCGAGTCGGTACAATTTGAGGACACCAT
GGCGGCGATCGCGGAAGGCTTCGACTACGTGCCTAAGCGGTGA
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