EsuBft1743_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1743_5a-0001
Unique NameEsuBft1743_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:267377..267818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1743_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length44
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1743_5aEsuBft1743_5aEctocarpus subulatus male Bft15bgeneScaffold_70 267377..267818 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1743_5a-0001-exonEsuBft1743_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 267377..267818 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1743_5a-0001-exonagat-five_prime_utr-3988Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 267377..267515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1743_5a-0001-cdsEsuBft1743_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 267516..267818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1743_5a-0001EsuBft1743_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 267516..267818 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1743_5a-0001 ID=EsuBft1743_5a-0001|Name=EsuBft1743_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=442bp|location=Sequence derived from alignment at Scaffold_70:267377..267818+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCTTTCCCCGTGTGGCATCATCATCGTCATCGGGATATAATCGGGGCAT
ACATCCGCTGCTGCGGCTACCGGCGGTTGCTGCTGTTGCTGCTGCTTGCT
GCTGCCGCTGTTGGTTTTGAAATCAACCCCCCACACCAAATGTCGGCGCC
GAGGGTTGAACAAGCTTCGGCTGGCGATATCAGCAGTGGGTCCCACGCTG
CTGGCCCTTCTCTCCAGGCCCTTGAGGAGAAGGCGAGGCGGCTGCTGAAG
CGCCGCCGGTATGACGACGCGGCCAAAACGTTTAAAACTATTCTGGAGGT
TGCACAAGTTCAACGAGATGCTGCTGCTGGGCGGGGCCGGCAGCAGCAGC
AGCAGCATTGGCCGGACCCCAAGAGGATCTGGTCCCTGGAGATCGGAGCT
TTGGAGGGCCTCGCCATCTGCCTCAGTCGACAGCTAGAGTGA
back to top

protein sequence of EsuBft1743_5a-0001

>EsuBft1743_5 ID=EsuBft1743_5|Name=EsuBft1743_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MSAPRVEQASAGDISSGSHAAGPSLQALEEKARRLLKRRRYDDAAKTFKT
ILEVAQVQRDAAAGRGRQQQQQHWPDPKRIWSLEIGALEGLAICLSRQLE
back to top

mRNA from alignment at Scaffold_70:267377..267818+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1743_5a-0001 ID=EsuBft1743_5a-0001|Name=EsuBft1743_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=442bp|location=Sequence derived from alignment at Scaffold_70:267377..267818+ (Ectocarpus subulatus male Bft15b)
TTCTTTCCCCGTGTGGCATCATCATCGTCATCGGGATATAATCGGGGCAT
ACATCCGCTGCTGCGGCTACCGGCGGTTGCTGCTGTTGCTGCTGCTTGCT
GCTGCCGCTGTTGGTTTTGAAATCAACCCCCCACACCAAATGTCGGCGCC
GAGGGTTGAACAAGCTTCGGCTGGCGATATCAGCAGTGGGTCCCACGCTG
CTGGCCCTTCTCTCCAGGCCCTTGAGGAGAAGGCGAGGCGGCTGCTGAAG
CGCCGCCGGTATGACGACGCGGCCAAAACGTTTAAAACTATTCTGGAGGT
TGCACAAGTTCAACGAGATGCTGCTGCTGGGCGGGGCCGGCAGCAGCAGC
AGCAGCATTGGCCGGACCCCAAGAGGATCTGGTCCCTGGAGATCGGAGCT
TTGGAGGGCCTCGCCATCTGCCTCAGTCGACAGCTAGAGTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_70:267377..267818+

>EsuBft1743_5a-0001 ID=EsuBft1743_5a-0001|Name=EsuBft1743_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_70:267377..267818+ (Ectocarpus subulatus male Bft15b)
ATGTCGGCGCCGAGGGTTGAACAAGCTTCGGCTGGCGATATCAGCAGTGG
GTCCCACGCTGCTGGCCCTTCTCTCCAGGCCCTTGAGGAGAAGGCGAGGC
GGCTGCTGAAGCGCCGCCGGTATGACGACGCGGCCAAAACGTTTAAAACT
ATTCTGGAGGTTGCACAAGTTCAACGAGATGCTGCTGCTGGGCGGGGCCG
GCAGCAGCAGCAGCAGCATTGGCCGGACCCCAAGAGGATCTGGTCCCTGG
AGATCGGAGCTTTGGAGGGCCTCGCCATCTGCCTCAGTCGACAGCTAGAG
TGA
back to top