EsuBft3838_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3838_2a-0001
Unique Name	EsuBft3838_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_70	contig	Scaffold_70:247916..250336 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FSK2
ProteomeId	EsuBft3838_2
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	92
Hectar predicted targeting category	other localisation
Evalue	2.14e-12
EggNOG OGs	2E2RF@1\|root,2S9YA@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Plant transposon protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3838_2a	EsuBft3838_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_70 247916..250336 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3838_2a-0001-exon	EsuBft3838_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 247916..248434 -
EsuBft3838_2a-0001-exon	agat-exon-9818	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 249935..250336 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3838_2a-0001-cds	EsuBft3838_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_70 247916..248434 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3838_2a-0001	EsuBft3838_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_70 247916..250336 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:247916..250336-
coding sequence from alignment at Scaffold_70:247916..250336-

spliced messenger RNA

>EsuBft3838_2a-0001 ID=EsuBft3838_2a-0001|Name=EsuBft3838_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=921bp|location=Sequence derived from alignment at Scaffold_70:247916..250336- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGTTTCAGCATCAAAGCCGCCCTGGCCGCGGCAAGCGCCCTCCA
GAGCACGAATCAGGCCATGAGCGCTAACCTTCGAGATGCGCTGGCGGGAG
AGTCGGAGGATGGGTGGTCAGACGAGGAAGAGGAGGAGGAGGAAGATTTC
GGCCCGTGTGACCGTGAAACGAGGGAGCGCCCGGACTACAGCTCGAGTGC
ATGGGGCGTACGACTGGCTAACTTGGAGAGCCTGCGGATCGCCGGCAGGC
TCGTCCCCTCCAGCAGGGAAGCGAAGGCTTTCCGCTCGGACTTCAGGGTT
CCGTACGAGTTTTCCCGGCACTTCGTCGACCTCGTCAGAACCGTCTTCCC
GACTGCTACCCGCGACGTTGCCGGGCGCCAGTGTGTTCCCTTGGAGCTCA
AGGTTCTCAAAAAGGTCGCGGGGGAGTACGGCGACATGGGATGTCCGGGG
GCGGTGGCTTCGGTGGACTGCACCCACATTTCCTGGCCGGCCTGTCCTTT
CTCGGAGACTAACACCCACAAGGGCAAGGAGGGTGATACGACCCTCGTGT
ACGAAGCGTCCTGCCACCACTCTGGTCGNCCTTTCTCGGAGACTAACACC
CACAAGGGCAAGGAGGGTTATACGACCCTCGTGTACGAAGCGTCCTGCGA
CCACTCTGGTCGCATCCTCTCGTCAACGAAGGGGTTCCCTGGGGCTGAAA
ACGACAAGACCGTGGTGAAGCGCGACCTGTCCGTACTTCGAATGCGGGAG
GAGGAGCCTTGGGCGAGCTACAAGTTCGTTCTCTTCGACCTGGAAGGCAA
CACTACGGAGCACACGGGAAAATGGCTGATCGTGGATGGGGGGTACCATC
GGGTGAGTTCCGTGTGGGTGTCGTACATGGCGAGGGTGCAGACTACGAGG
GAAATATGTACTGGTGCGTAG

protein sequence of EsuBft3838_2a-0001

>EsuBft3838_2 ID=EsuBft3838_2|Name=EsuBft3838_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=306bp
MASFSIKAALAAASALQSTNQAMSANLRDALAGESEDGWSDEEEEEEEDF
GPCDRETRERPDYSSSAWGVRLANLESLRIAGRLVPSSREAKAFRSDFRV
PYEFSRHFVDLVRTVFPTATRDVAGRQCVPLELKVLKKVAGEYGDMGCPG
AVASVDCTHISWPACPFSETNTHKGKEGDTTLVYEASCHHSGRPFSETNT
HKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMRE
EEPWASYKFVLFDLEGNTTEHTGKWLIVDGGYHRVSSVWVSYMARVQTTR
EICTGA

mRNA from alignment at Scaffold_70:247916..250336-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3838_2a-0001 ID=EsuBft3838_2a-0001|Name=EsuBft3838_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2421bp|location=Sequence derived from alignment at Scaffold_70:247916..250336- (Ectocarpus subulatus male Bft15b)
ATGGCGAGTTTCAGCATCAAAGCCGCCCTGGCCGCGGCAAGCGCCCTCCA
GAGCACGAATCAGGCCATGAGCGCTAACCTTCGAGATGCGCTGGCGGGAG
AGTCGGAGGATGGGTGGTCAGACGAGGAAGAGGAGGAGGAGGAAGATTTC
GGCCCGTGTGACCGTGAAACGAGGGAGCGCCCGGACTACAGCTCGAGTGC
ATGGGGCGTACGACTGGCTAACTTGGAGAGCCTGCGGATCGCCGGCAGGC
TCGTCCCCTCCAGCAGGGAAGCGAAGGCTTTCCGCTCGGACTTCAGGGTT
CCGTACGAGTTTTCCCGGCACTTCGTCGACCTCGTCAGAACCGTCTTCCC
GACTGCTACCCGCGACGTTGCCGGGCGCCAGTGTGTTCCCTTGGAGCTCA
AGGTAGGTGCGCTTGACGCTGGTGATCGGTTAGAAGCAGCAGCAGTCGGG
CCTTTTAGATCCCCACCATGTATGTGGGTTCGGTAGAGGTCGCAAAGCTT
GGCGGTAATATGTTCCGTGCGCGTCTGCACGCTGTCTCATCGGGTGGCAC
GTGTTGTTCGAAAAGATCGTTTACTCTCTCCGCAGCAGCCTCTTTCCGCT
ACGCCCGAGCAAAGGCGTGGGCGGAAGCCGTTGTCGGCAGCCTCTGCCTC
TTCTAACTACTGCTTGCTGTATGTATTGTGCAGCAACCAAGGTTTTGCAA
GGCGTGTTATTTTTGGGCCTATTTTTTTAGTGAGTTTCAACACATGCGGC
AGCGGCTACCTGCCCTCTGCGTTAGCACGCGCCTGGCTACATACGAACCT
GCTGCAAAGCTGGCATTTCTCTCTAGGGTAGCAGGGTAAGACCCTAGGTT
ACTGGTATTGTAGTAGCAGTGATACATGGCCTTGCTGTTGTAGATTATGT
ATCAGATCTACAGTGTATCCTTTAACAAGCAGTGAATGGTTTCATGTCCC
TTTCATGTTTCTTTCGCGCCCCCCCGCCGGAATGCCAATGTGACGTGCGT
GGGTTTTTATCCTCTGCTCCAGCAGATAGTCAAAAACGCGGTTTGCATCC
GCTGTCCAACCGTGTTTTTTGTTCGGGCCGAGTAGAAAAGGCGTGACGCA
GCGGCGTTACGCCTGTGCTTACACACAGCTGTGTCGTTCCAACGAGATGT
AGTCACTTTGACTTGTGCACAACCTGAGACAGGCAGAGAACCCGCCGCGA
CCGGCAAAAGAACACGGCACCTTATTTCCTCATCTCAACACCTAGCCGAG
CACCTTTTCCAAATATCTTCCCATGGGAGTCCATCGACGCGAATACCTAG
GTGCCATGTGGCGGGGGGAAATGCTGGGGAAATGCTCGGAAAGCGCCGCG
GCAGTAGCAGTAGTGGCTTGCGCAGGCGTGGCCGAAAATTGCCACTGCAG
GAGTTTTTCGACACGTCTTCCCCCCTCACGATTGTCATGAATGACGGGCG
GCATCTACGCAACACGCGAGAGCACTGATGTCGTAGCTGCCCCCACCCCT
TCCTGTAAATTCCTTTCCTGTAGCTTTGGTGCGCGTGCGTCGTGAAACAG
CAGCAGTATATGTACGATGATGCTGGCTCGCATCCGCGACCTTATTTCTG
TGGTATGTTATTTGGGCCCGCCCGAGCACGTCACACCTGGTTAGCCTGGC
ATGTCAAAACATAACTGCGCTACCTTCCGCTCATATCGCATGCAACCCTC
TCCAATCAAAACACTCTGCCCTTCCTGTACTTGCAAGCAGGTGCTGGGGG
TGCTGCAAGTCTTGGGAAGAGGGAACTGCTTCGCGGATGTCGCTCAGCTC
TCTCTCATGAGCCGGCAAACGGCGGAGAAATCGTTCCACCGGTTCTGCGA
CTGCTTCTCATCGGGGTTGTGGCATCAGTGGGTGACGCTGCCGGAGGGGT
AGGTTCTCAAAAAGGTCGCGGGGGAGTACGGCGACATGGGATGTCCGGGG
GCGGTGGCTTCGGTGGACTGCACCCACATTTCCTGGCCGGCCTGTCCTTT
CTCGGAGACTAACACCCACAAGGGCAAGGAGGGTGATACGACCCTCGTGT
ACGAAGCGTCCTGCCACCACTCTGGTCGNCCTTTCTCGGAGACTAACACC
CACAAGGGCAAGGAGGGTTATACGACCCTCGTGTACGAAGCGTCCTGCGA
CCACTCTGGTCGCATCCTCTCGTCAACGAAGGGGTTCCCTGGGGCTGAAA
ACGACAAGACCGTGGTGAAGCGCGACCTGTCCGTACTTCGAATGCGGGAG
GAGGAGCCTTGGGCGAGCTACAAGTTCGTTCTCTTCGACCTGGAAGGCAA
CACTACGGAGCACACGGGAAAATGGCTGATCGTGGATGGGGGGTACCATC
GGGTGAGTTCCGTGTGGGTGTCGTACATGGCGAGGGTGCAGACTACGAGG
GAAATATGTACTGGTGCGTAG

Coding sequence (CDS) from alignment at Scaffold_70:247916..250336-

>EsuBft3838_2a-0001 ID=EsuBft3838_2a-0001|Name=EsuBft3838_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=921bp|location=Sequence derived from alignment at Scaffold_70:247916..250336- (Ectocarpus subulatus male Bft15b)
ATGGCGAGTTTCAGCATCAAAGCCGCCCTGGCCGCGGCAAGCGCCCTCCA
GAGCACGAATCAGGCCATGAGCGCTAACCTTCGAGATGCGCTGGCGGGAG
AGTCGGAGGATGGGTGGTCAGACGAGGAAGAGGAGGAGGAGGAAGATTTC
GGCCCGTGTGACCGTGAAACGAGGGAGCGCCCGGACTACAGCTCGAGTGC
ATGGGGCGTACGACTGGCTAACTTGGAGAGCCTGCGGATCGCCGGCAGGC
TCGTCCCCTCCAGCAGGGAAGCGAAGGCTTTCCGCTCGGACTTCAGGGTT
CCGTACGAGTTTTCCCGGCACTTCGTCGACCTCGTCAGAACCGTCTTCCC
GACTGCTACCCGCGACGTTGCCGGGCGCCAGTGTGTTCCCTTGGAGCTCA
AGGTTCTCAAAAAGGTCGCGGGGGAGTACGGCGACATGGGATGTCCGGGG
GCGGTGGCTTCGGTGGACTGCACCCACATTTCCTGGCCGGCCTGTCCTTT
CTCGGAGACTAACACCCACAAGGGCAAGGAGGGTGATACGACCCTCGTGT
ACGAAGCGTCCTGCCACCACTCTGGTCGNCCTTTCTCGGAGACTAACACC
CACAAGGGCAAGGAGGGTTATACGACCCTCGTGTACGAAGCGTCCTGCGA
CCACTCTGGTCGCATCCTCTCGTCAACGAAGGGGTTCCCTGGGGCTGAAA
ACGACAAGACCGTGGTGAAGCGCGACCTGTCCGTACTTCGAATGCGGGAG
GAGGAGCCTTGGGCGAGCTACAAGTTCGTTCTCTTCGACCTGGAAGGCAA
CACTACGGAGCACACGGGAAAATGGCTGATCGTGGATGGGGGGTACCATC
GGGTGAGTTCCGTGTGGGTGTCGTACATGGCGAGGGTGCAGACTACGAGG
GAAATATGTACTGGTGCGTAG