EsuBft1074_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1074_2a-0001
Unique NameEsuBft1074_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:89625..92244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1074_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length262
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1074_2aEsuBft1074_2aEctocarpus subulatus male Bft15bgeneScaffold_70 89625..92244 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1074_2a-0001-exonEsuBft1074_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 89625..92244 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1074_2a-0001-exonagat-three_prime_utr-698Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 89625..91803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1074_2a-0001-cdsEsuBft1074_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 91804..92139 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1074_2a-0001-exonagat-five_prime_utr-434Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 92140..92244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1074_2a-0001EsuBft1074_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 91804..92139 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1074_2a-0001 ID=EsuBft1074_2a-0001|Name=EsuBft1074_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2620bp|location=Sequence derived from alignment at Scaffold_70:89625..92244- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TAGCGTACTCGTTGGAGAGGGCATCCAACAAGAGGTGCAAAACGAAGGTT
TCGTTAACAAAGCCCCCGTTTCGAAAGGGACTCTGCGGTGGCGAGCATTG
AGAGCATGTTGCGGATTCTCTGCCATCGGGATCTTGTTGGATGTCAGGGA
TTTCAACTCATCCGCAGGCTGCATGGACGATTCTGGGTCGTACAACCCCT
TCAGCTCACGGAGCGCCCTCAGGGGCGACTCAGCTCGCTTCATTATTGTC
CTGTCTTTCTCGTCCTTGAGAGCTCCACGGAGGAAATTCCACGCGTGGAA
AGCGAGCTCTACTTTGTCGTGCGGGTAAAACCTGGACAGTTGGACCTTGC
TCTGCCCACTGTTAACGGGGATCTCCGCCCCCCCCTCCTCGTAAAGCTCA
AGAAGGTTTGCTGCGTTCGCTGCCATCAAAAAATCCTCTAGCCACGAAGA
AAACTCTTGGCGTCTCCGCTGAACGTGGGCGCTGTGTACTTCACGCTTTG
GTATCCCACGCTCGCACTACCGAAGACAGCAGCACCACTTCCCATGGCGC
TGCTGAAACAAGCTTGATTGTGAGCAGCGGCTACTCTCACCTCTTGGGGG
TCTGAACCCCCTACTTCGCCGCTGTGTCGTCCCGAAGGACCAGACTCTCG
TCGCAGGTCCGCTGCCTGCGCGCTCCCGTCGTACTGCACGGTCCCAAAAT
GACCTGCAGTGCTTGTGGCGACGCTCTCCACGGCGCCGCCGCTTTCAGCG
GCGCCCTCCGTGGCACCGCCGGACTTCTCCTCTATACGTGCAGCAAGTCC
TCCGACCAGCTGCACCAGCTGGCCCATTTGCTGTGTCAGCGAACTGATCT
CAGACCGCATGCTGTCGATCTGCTCGCTGCTATTGGTGTCTCCTGCCTGC
GAGCCGTCCGGAGTGGTCCCTCCGGTTCTGCGGCCCGCCATCCCTAATGG
ACTCCCTCGAGGGAATAAACACTAGTGTGTTGGTATGTCCGTACTTGGGA
GGAGAAGACACGCTTTAACTCTCTCTGATTAGGCACCCGCGGGAGCGAGG
AAAGGAAGGGAAGAAGTGGCCCTCCCGAATTCGGGGAAGGGGGCCCACAC
ATAGTAGCCTTTTTCAGGCATACGCATGCTCCTGTCTACGTACCCCCCCG
TGCTGCTAGCAGATCTACCATGCTCGTATCCAGACACACGAACAATCGCA
CTCGGTACAGTCGTTCTATTGCACAAAGAGAGGTTAGCGTGTGTGCATCG
CTGCGTGAGAGGGCTAGAATACCTCTCAGGAGCAGCAATTCCCTTTCTGG
CACCAGAAGCAGTGCCTCGATCGGGAGCCCTCTGATACTTGCTGATTCCA
CGCATTAGACCTCCACCGCTACGTGCTAACGACTCGTTACATGGTGTACA
ATCGATGAGCACGCACTCGCGTGCGTGTGAGTTCTGTTGTTATATGCTTG
TATCCCTTTGCCGCCCTGCTGCTTCGCTGTGTTCCCTTACAAAATCACGG
CCGGCTGCTGTGGCCGTTCCATGAAATTCGTCCTGTATTTGGCTCTGACC
AGGTGGCGCCTTGTGCGTCGGTCGCTTTGTGTTAACTTCCCCTCGGACCC
GGTTGCACCTTTCGCTGCAAGCTGCGGTTACAGTTCCTGCGCCTTTCGCG
GCATGTTGACTTTCCTTCTGTGCTCTTTGTCGCTCTTCACGCATTTCTGA
ACTACGCTGGGTGCGTACGGCGCAACTCGTACGCCGTGCACAGGGCGTTG
TTTTTCATCTTTTAACTCCTTGAAACGTTTGTTTCCCTTTGTCCCTCTAT
GTTCTTGGCTGTTGGTTAGCTGTGCGCCTGGTATGTGCGCCCCGCCGCGC
GTTGTTTTGTGGCATTGCGATGCACTTGGTGAGTGCGTCCTTCTAGGCCC
TATTTAGCATATGTTATTCTTGTTTATGTATTTGTCTTCCTTCATCTAAT
CGCTGTGAGCGCGTTTTATCTGTACGCCGTCGCTGCCGGTTGTGCGCGGT
TGCGTCTTGTGAATCCGGTGCGCCTTGCGTCGGCCGGGGCGCTGCTGCTC
GTACGAACGTCGCTGCTGTGCGTCTGCCACTTTCGATCGAAGCCGGCCCT
CCCCGAGCGCGCCATGTTCGCCGACGGGGGGGGGAGGTGCTTTCAGCACG
GGGGGAGTTGCCCCTAAACGCGGCAGTGGACACAGGGACCACGGCGAGCG
GTTCACCGGGCGCTATGCGTGCCGAAGGGCCCGGGTTTGCTCGTTCGACG
CCAGCAGGAGGATACCCTTTGGGGTCAGGTTCGGGAGGATCTAGAGAAGG
GTGCAGCTCAGGCTACGGTGTGGATGGTTGGGGGGTTCTGAGTTATGAGG
TTGAGAGCTGCAAGCCCAGGCTTCTGATGTCGACCCCCAAATGCATGGTG
GCCAATATTCTCGATGTAATCCACACATGACATGAACTACAAGAGTCAGA
CTACCGTTGTCACGAATTCGTGATTACTTCATTGACCCGAATCCGATTCC
GGCCGCTCTAGCGACTTTTGGCCAGAGCCACTGGGCACCTTGAGTGTTCC
TTTCGATGCTTTGGGAGGAAACGCACGTCTCACGTGTGATGTTCTTTTTC
TTTGGTTTCTTGCAACCCGT
back to top

protein sequence of EsuBft1074_2a-0001

>EsuBft1074_2 ID=EsuBft1074_2|Name=EsuBft1074_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=111bp
MLRILCHRDLVGCQGFQLIRRLHGRFWVVQPLQLTERPQGRLSSLHYCPV
FLVLESSTEEIPRVESELYFVVRVKPGQLDLALPTVNGDLRPPLLVKLKK
VCCVRCHQKIL
back to top

mRNA from alignment at Scaffold_70:89625..92244-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1074_2a-0001 ID=EsuBft1074_2a-0001|Name=EsuBft1074_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2620bp|location=Sequence derived from alignment at Scaffold_70:89625..92244- (Ectocarpus subulatus male Bft15b)
TAGCGTACTCGTTGGAGAGGGCATCCAACAAGAGGTGCAAAACGAAGGTT
TCGTTAACAAAGCCCCCGTTTCGAAAGGGACTCTGCGGTGGCGAGCATTG
AGAGCATGTTGCGGATTCTCTGCCATCGGGATCTTGTTGGATGTCAGGGA
TTTCAACTCATCCGCAGGCTGCATGGACGATTCTGGGTCGTACAACCCCT
TCAGCTCACGGAGCGCCCTCAGGGGCGACTCAGCTCGCTTCATTATTGTC
CTGTCTTTCTCGTCCTTGAGAGCTCCACGGAGGAAATTCCACGCGTGGAA
AGCGAGCTCTACTTTGTCGTGCGGGTAAAACCTGGACAGTTGGACCTTGC
TCTGCCCACTGTTAACGGGGATCTCCGCCCCCCCCTCCTCGTAAAGCTCA
AGAAGGTTTGCTGCGTTCGCTGCCATCAAAAAATCCTCTAGCCACGAAGA
AAACTCTTGGCGTCTCCGCTGAACGTGGGCGCTGTGTACTTCACGCTTTG
GTATCCCACGCTCGCACTACCGAAGACAGCAGCACCACTTCCCATGGCGC
TGCTGAAACAAGCTTGATTGTGAGCAGCGGCTACTCTCACCTCTTGGGGG
TCTGAACCCCCTACTTCGCCGCTGTGTCGTCCCGAAGGACCAGACTCTCG
TCGCAGGTCCGCTGCCTGCGCGCTCCCGTCGTACTGCACGGTCCCAAAAT
GACCTGCAGTGCTTGTGGCGACGCTCTCCACGGCGCCGCCGCTTTCAGCG
GCGCCCTCCGTGGCACCGCCGGACTTCTCCTCTATACGTGCAGCAAGTCC
TCCGACCAGCTGCACCAGCTGGCCCATTTGCTGTGTCAGCGAACTGATCT
CAGACCGCATGCTGTCGATCTGCTCGCTGCTATTGGTGTCTCCTGCCTGC
GAGCCGTCCGGAGTGGTCCCTCCGGTTCTGCGGCCCGCCATCCCTAATGG
ACTCCCTCGAGGGAATAAACACTAGTGTGTTGGTATGTCCGTACTTGGGA
GGAGAAGACACGCTTTAACTCTCTCTGATTAGGCACCCGCGGGAGCGAGG
AAAGGAAGGGAAGAAGTGGCCCTCCCGAATTCGGGGAAGGGGGCCCACAC
ATAGTAGCCTTTTTCAGGCATACGCATGCTCCTGTCTACGTACCCCCCCG
TGCTGCTAGCAGATCTACCATGCTCGTATCCAGACACACGAACAATCGCA
CTCGGTACAGTCGTTCTATTGCACAAAGAGAGGTTAGCGTGTGTGCATCG
CTGCGTGAGAGGGCTAGAATACCTCTCAGGAGCAGCAATTCCCTTTCTGG
CACCAGAAGCAGTGCCTCGATCGGGAGCCCTCTGATACTTGCTGATTCCA
CGCATTAGACCTCCACCGCTACGTGCTAACGACTCGTTACATGGTGTACA
ATCGATGAGCACGCACTCGCGTGCGTGTGAGTTCTGTTGTTATATGCTTG
TATCCCTTTGCCGCCCTGCTGCTTCGCTGTGTTCCCTTACAAAATCACGG
CCGGCTGCTGTGGCCGTTCCATGAAATTCGTCCTGTATTTGGCTCTGACC
AGGTGGCGCCTTGTGCGTCGGTCGCTTTGTGTTAACTTCCCCTCGGACCC
GGTTGCACCTTTCGCTGCAAGCTGCGGTTACAGTTCCTGCGCCTTTCGCG
GCATGTTGACTTTCCTTCTGTGCTCTTTGTCGCTCTTCACGCATTTCTGA
ACTACGCTGGGTGCGTACGGCGCAACTCGTACGCCGTGCACAGGGCGTTG
TTTTTCATCTTTTAACTCCTTGAAACGTTTGTTTCCCTTTGTCCCTCTAT
GTTCTTGGCTGTTGGTTAGCTGTGCGCCTGGTATGTGCGCCCCGCCGCGC
GTTGTTTTGTGGCATTGCGATGCACTTGGTGAGTGCGTCCTTCTAGGCCC
TATTTAGCATATGTTATTCTTGTTTATGTATTTGTCTTCCTTCATCTAAT
CGCTGTGAGCGCGTTTTATCTGTACGCCGTCGCTGCCGGTTGTGCGCGGT
TGCGTCTTGTGAATCCGGTGCGCCTTGCGTCGGCCGGGGCGCTGCTGCTC
GTACGAACGTCGCTGCTGTGCGTCTGCCACTTTCGATCGAAGCCGGCCCT
CCCCGAGCGCGCCATGTTCGCCGACGGGGGGGGGAGGTGCTTTCAGCACG
GGGGGAGTTGCCCCTAAACGCGGCAGTGGACACAGGGACCACGGCGAGCG
GTTCACCGGGCGCTATGCGTGCCGAAGGGCCCGGGTTTGCTCGTTCGACG
CCAGCAGGAGGATACCCTTTGGGGTCAGGTTCGGGAGGATCTAGAGAAGG
GTGCAGCTCAGGCTACGGTGTGGATGGTTGGGGGGTTCTGAGTTATGAGG
TTGAGAGCTGCAAGCCCAGGCTTCTGATGTCGACCCCCAAATGCATGGTG
GCCAATATTCTCGATGTAATCCACACATGACATGAACTACAAGAGTCAGA
CTACCGTTGTCACGAATTCGTGATTACTTCATTGACCCGAATCCGATTCC
GGCCGCTCTAGCGACTTTTGGCCAGAGCCACTGGGCACCTTGAGTGTTCC
TTTCGATGCTTTGGGAGGAAACGCACGTCTCACGTGTGATGTTCTTTTTC
TTTGGTTTCTTGCAACCCGT
back to top

Coding sequence (CDS) from alignment at Scaffold_70:89625..92244-

>EsuBft1074_2a-0001 ID=EsuBft1074_2a-0001|Name=EsuBft1074_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=336bp|location=Sequence derived from alignment at Scaffold_70:89625..92244- (Ectocarpus subulatus male Bft15b)
ATGTTGCGGATTCTCTGCCATCGGGATCTTGTTGGATGTCAGGGATTTCA
ACTCATCCGCAGGCTGCATGGACGATTCTGGGTCGTACAACCCCTTCAGC
TCACGGAGCGCCCTCAGGGGCGACTCAGCTCGCTTCATTATTGTCCTGTC
TTTCTCGTCCTTGAGAGCTCCACGGAGGAAATTCCACGCGTGGAAAGCGA
GCTCTACTTTGTCGTGCGGGTAAAACCTGGACAGTTGGACCTTGCTCTGC
CCACTGTTAACGGGGATCTCCGCCCCCCCCTCCTCGTAAAGCTCAAGAAG
GTTTGCTGCGTTCGCTGCCATCAAAAAATCCTCTAG
back to top