EsuBft957_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft957_14a-0001
Unique NameEsuBft957_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:313086..317438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZA3
ProteomeIdEsuBft957_14
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length164
Hectar predicted targeting categoryother localisation
Evalue1.73e-268
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K17710
Descriptionendonuclease activity
COG categoryS
BRITEko00000,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft957_14aEsuBft957_14aEctocarpus subulatus male Bft15bgeneScaffold_68 313086..317438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_14a-0001EsuBft957_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 313118..317042 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_14a-0001-exonagat-exon-32351Ectocarpus subulatus male Bft15bexonScaffold_68 313086..313188 +
EsuBft957_14a-0001-exonagat-exon-32353Ectocarpus subulatus male Bft15bexonScaffold_68 313707..313887 +
EsuBft957_14a-0001-exonagat-exon-32352Ectocarpus subulatus male Bft15bexonScaffold_68 314206..314211 +
EsuBft957_14a-0001-exonEsuBft957_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 314613..314872 +
EsuBft957_14a-0001-exonagat-exon-32350Ectocarpus subulatus male Bft15bexonScaffold_68 315776..315890 +
EsuBft957_14a-0001-exonagat-exon-32349Ectocarpus subulatus male Bft15bexonScaffold_68 316458..317438 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_14a-0001-exonagat-five_prime_utr-15279Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_68 313086..313117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_14a-0001-cdsEsuBft957_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 313118..313188 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_14a-0001-exonagat-three_prime_utr-23474Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 317043..317438 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft957_14a-0001 ID=EsuBft957_14a-0001|Name=EsuBft957_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1646bp|location=Sequence derived from alignment at Scaffold_68:313086..317438+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTACGGCGAGGGTATTCGTCCCCACGGCGGGATGCTAGCCTCGTACCTC
TTGGCCCTCATGAGGTCCGGAGACTGGAAGACCGCTCTCGACGTTCGAGA
AAGGTATCGCGGCGACAAGGAGGAATTTCAGCTGTCTCACGCGGAGAGAC
ACGTCCACAAGCTTGACTTTGTCGCCAGAGAGGAGGCAGTGGTAGACGGT
GTTGTGGCGAACGGGCTCGTAGATAACAAACAGCCCGGCCTGGCGTTGGC
ATACGTGCTGGAAGTCCTCAAGGCTCGGGAAGAGGGTAAGGAGGGTGCTA
GCGGCAACGGCAACGATAGCGACTTGAAGCACTTCATCGACGAGGACAAT
CACACTGTACTCGCTGGAATAAGAGCTTGCAAGCAGGCCGGCTCGTGCGA
AACCGCCATAGGTTTGCTAGAGGCCTGTGAGGCGAGATGGGCGAAGGGGC
CTCTGGAGCGGGATGCGGGGAGCGGGGGCGGGAGCGAGGAGGGGCAGTGG
GCCCAGTACGAGTGGCGAGCGATGCTGGTCAGAACAAGGCTGTCCAGGAG
ACGGTTGTACGACTGCTTGATTTCTGTGCTGGATGAGAAGGATCACGACT
TTGGCGACATCCGACGGGTGCTGGAGACAGGCATGAAGAACGGCGCTGTG
TCGTTGATGAAAGACCAACAAGGTGGAACGTCGGCGGATCAGGCGGTGGA
CTTCCACGGCTGGTCCACGCGAAGCGCCCGGTGCATCGTCCGCTGCATCA
TCGAAGACCTCACCCTCGGCCAGGACTTCCTCCATCGAACGGGCCAGTAC
GACCTCGGCCGAGTGGCCCTCGCCCAGGGTCTGCGGGAGTTCGGCAACGT
CAGCGATAGGTGGCACGTTGACAGTCCCGACCCCAGGGGCAGGCGGCGGG
AGTTCGCCGACGGTGTGACTCCGGCCCGGTTCGCGGAACGAGAATACGGT
AAAGGCCGGAAACGGAATCCCGAGAAAAAGTCTCATTGGGTGAAACCCGA
GGGAGGCTGGGACGGACGTGGGTCCGACGAGAGTCAGGCTAGGTGGTGGG
AGAAGCAGAAGCGCTTGTCCTTAGTTGTGGGGAAGCCTAGACCTCCCCCG
TGTATCCGTAACGCGGTGGAGGAGTTCTGCATGCTGGGGGTGTCCCCACC
CCTGAGGGTGCAGAAGGCAGCGTCCAACCCCGGGATCTTGACCATCGAGC
CGGAGGACGTGCAGGCGTGGTTGGAGCGAAATCCGCGCGTCTTGTCGTGA
TTTTTTTTTTTTAGTTGTGTTTTTACACGTCGGCGGCGGAGTCCTTGCAA
ACTGGTGTGACGGTGTGTACGTCATGGACGCGGCAACCGAGAATGTGCGG
CCGTGATGTGGACAATCTTGCCCATCATAGAGCTGCTGCTACAAGCGTAT
TTTGAAGGGAGGGTTGGGAGAGTGAACACATCCATGTGTCTTGGGTGCTT
GGTCGAACATTTGGGCTTGGACTTGCGTGCCTGTGGGCAACGAGCATCCT
GAATTCTGGATGCTTCCGTACGAGCGCTCTGCCGACTGGAGACTGTGAAA
CGCATAGCGGGAACATCTTCTAAAAGTGCTGCTGATGGCTGATGGTCGTC
AACGTACCGGTGACATATGCCGATGGTGCTGCCTCGTGTACAGCAA
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protein sequence of EsuBft957_14a-0001

>EsuBft957_14 ID=EsuBft957_14|Name=EsuBft957_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=405bp
MLASYLLALMRSGDWKTALDVRERYRGDKEEFQLSHAERHVHKLDFVARE
EAVVDGVVANGLVDNKQPGLALAYVLEVLKAREEGKEGASGNGNDSDLKH
FIDEDNHTVLAGIRACKQAGSCETAIGLLEACEARWAKGPLERDAGSGGG
SEEGQWAQYEWRAMLVRTRLSRRRLYDCLISVLDEKDHDFGDIRRVLETG
MKNGAVSLMKDQQGGTSADQAVDFHGWSTRSARCIVRCIIEDLTLGQDFL
HRTGQYDLGRVALAQGLREFGNVSDRWHVDSPDPRGRRREFADGVTPARF
AEREYGKGRKRNPEKKSHWVKPEGGWDGRGSDESQARWWEKQKRLSLVVG
KPRPPPCIRNAVEEFCMLGVSPPLRVQKAASNPGILTIEPEDVQAWLERN
PRVLS
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mRNA from alignment at Scaffold_68:313086..317438+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft957_14a-0001 ID=EsuBft957_14a-0001|Name=EsuBft957_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4353bp|location=Sequence derived from alignment at Scaffold_68:313086..317438+ (Ectocarpus subulatus male Bft15b)
TGTACGGCGAGGGTATTCGTCCCCACGGCGGGATGCTAGCCTCGTACCTC
TTGGCCCTCATGAGGTCCGGAGACTGGAAGACCGCTCTCGACGTTCGAGA
AAGGTGTGTAGTCGCTGTGGTGCTGGTGCTGCGGGCGGTGGGCGTTATTG
TGGTCACAGAATGCTATGTAGCTCCTGTTTTATTATCGTGGCATCAAGAA
CGCGTTATTGCAGTACCTCTCGTTGCATTCTGTGGCAATATATGTATGTA
TGTATGTATTTGTTTTTCGCACCAGGTTATGAGGGCGTGAACGGACTCTT
TGCACACGACAAAGCTGGTGATAATATAGTGGGTTGTACAGGATAACTCG
CCACGTGAAAATAATTAATTTCGTGATCCTTATCCTTCCTCAGTCCGTTC
TAATATACGATTATTGTATGCGTACCGGGGGTTGTTAGGTTACTCGGGTT
ACTCTGATTTTGCGGTTCTAGATGGGAGAATTCACGTTTCAGAACACCCA
CGCTCTTGTTGTGGACCGTTGGTTATTGTCCTCCGAACGTTAACGGTCGG
GCCTGCGCTTGATTCTCTGTTGAGCTGCTTTTTGTCTGTATTCTCTGCAT
CACGCGTGTTGTGGTATGAAGGTATCGCGGCGACAAGGAGGAATTTCAGC
TGTCTCACGCGGAGAGACACGTCCACAAGCTTGACTTTGTCGCCAGAGAG
GAGGCAGTGGTAGACGGTGTTGTGGCGAACGGGCTCGTAGATAACAAACA
GCCCGGCCTGGCGTTGGCATACGTGCTGGAAGTCCTCAAGGCTCGGGAAG
AGGTGAGTTGTTCATAGCTTGCCATCACTTGCCACAGCTTGTCATGTTGT
GTTGCGAGACTGTGCGGGAAAGGAAGGCGAGTTGTTCATACTTGTCATGG
CTTGTTCTAGCTTGTCATCGCTTGCCATCATTGCCCACTTCAGTAGGTAC
TCGTGTGTAGCATGTTTGTTGCTTACATATCAGGTTCTTCTGAAGTGTAG
AGGGCGGAGTTATCGCGATATCCTTGGTACCGTCCCCTCCTCCCGGATGG
CTCCATGATGTTGGTCAATCGTACTGTGGTCGTACGCGGTGTATTTCGTT
TTTGACTTAGCACCATGCAGGGTAAGGTGAATTCGTGGGATATTGCAGTA
GGAAGCATGTTGCGCCAATCACACACACGTATCTATTTGGTCGTTGTGTC
AAGCTGTATCATTACAACTGCGGTTTTGATGTGATTTCAATGATTGTTGT
GCCATGCAGTTTGGAAGGCATGGTGGTACGTATGTGTACGCCTAGTAGCA
TGACATTGGCGCTTCGAGACATTCATGTAGGCAGTCGAGTCTCTTTGATG
CCCTTGCAAGCGTACGAAATGATACACCCACACGACAAGTTCCGTCCGCG
ACCATGTTTGGGTGTTTCGCCCATCGCATCCATCCGGTTGCGTTGTCTCC
ACAACAGGGCAGTGTTTTCCTCAACATGCTTTGCGATCGTTTCTTATGTC
CTGATGAACACGATGCCCTCTCGACAGGAGGGTGCTAGCGGCAACGGCAA
CGATAGCGACTTGAAGCACTTCATCGACGAGGACAATCACACTGTACTCG
CTGGAATAAGAGCTTGCAAGCAGGCCGGCTCGTGCGAAACCGCCATAGGT
TTGCTAGAGGCCTGTGAGGCGAGATGGGCGAAGGGGCCTCTGGAGCGGGA
TGCGGGGAGCGGGGGCGGGAGCGAGGAGGGGCAGTGGGCCCAGTACGAGT
GGCGAGCGATGCTGGTCAGAACAAGGCTGTCCAGGAGGTAAAGTATGTGA
AGAACATTAACATTAATGAAGGTCGTCGGCACGATGCTGTGTGTTCCTCT
TGACGTGGACGTTGAACAGAGAGAGAGAATGATGGACATACGATGCAGGC
CGCATACGCAACGACGCAGAGAATGTAAATGAAAAGACCTGAGAGAGGAG
GTACGATGACTGCTGTGCGGCGCTAATGAGCCGAGGTCGGCACAACTGTA
GCAGAGCGAGGTCTATCGTAGGATGAACAACATGTCTTGGTTGCTTCTTG
GGAAGACATGAGGAAGTAACCAGACCACATGTTGTGTGACCCGCGCTACG
GCTTGTTCATGCTTTGATATTGAGGGGGGGAAAAGAGATGCCGGCAGAAA
AACGATTTGGGTCCCGGGCTTTGCTGTTGAGCTTCGGATGGCATTACTTC
TCTTACTGGAGCATTCGAAGGCTTGCCGAAGCCCCTCAGGCCTGGCCTTG
CTGACACCTATCGAGGTTCATCTTCCGTCCTTACCACGACGCTCACTTTG
CACCAAAAACAGCCCGTTTTCGCGGACTATGACTGTTGAATGCGAAAGTG
ATGCGTACGCCGCTCTTCACCATCAAAAGCTGTGCTCTCTTCATACGTCT
CGATGTCTCCTCCTAGAACCTGTAGACCACGAAACAAGCCATATGCGCTG
CTTCACCGGATTGTTTTCCCTTCGGGCAGGTCTTGACAAGTGTGACGTCG
CGCCTTAGAATATCACCCCCACCTGTGTCCTCTGTGGACCCTTGTTGGCC
ATTTTGGACGCTTCTTGTGCTGGTGCTCCACGCTACATTGCCGTGTACGT
CTACCTCCTTTGATGATGTCCGGGCTACCTTACACCTCCTATTTTTTTGC
TCTTGTTGCTTAATTTTTTTGTTGTTGTTCGTTCGGTCAGACGGTTGTAC
GACTGCTTGATTTCTGTGCTGGATGAGAAGGATCACGACTTTGGCGACAT
CCGACGGGTGCTGGAGACAGGCATGAAGAACGGCGCTGTGTCGTTGATGA
AAGACGTGAGGAGGAGGAGGAGCATGAGGAGGATAGGATCAATTGATTTA
CATGTTCACAGGGATAGTAGATGGCTGTACAGCAGTGGTGTGTCTCCATG
TGGTTTTGGTGGTCGCATGGAGGAAATCTTGGGGGGTAGTCTCGGAGATG
TGCAGTAGATACCTTGGAAATGCTTGTAGACATCCGAACAGAAACTGATT
CTCGTTGGTTAACTAGTTGCAGCAGAGGAAGGACTTCGAGAGGAAAGACC
CTCATCGTACGTATAGTGGTCGGTTCTACCGTGCGGCCGATTTCGCCGCG
TCCGTACGCCCCAATTCGAATCGAATGGAATGATGGAGCACGGCTGGCGT
TATTGTTGTTTTGTGGCGGCGGCTGCCCGGTTGCCGTACATTACATTTGC
ATGTCAGCAGCTACAGAGCAGCACGTGAGCGGAGGACATTTCCGTTGGGC
ACTTGGTTAGTCGTGATGCGGCTCCTGGCGAGCAGCTACTACACTGTGGT
TTTGCTTGACCTCTTGCGTCGGAGTGACCCCCTCCCCCTTTCCCGAACTG
CGTGGCCCCTTATTACCTGCAGCAACAAGGTGGAACGTCGGCGGATCAGG
CGGTGGACTTCCACGGCTGGTCCACGCGAAGCGCCCGGTGCATCGTCCGC
TGCATCATCGAAGACCTCACCCTCGGCCAGGACTTCCTCCATCGAACGGG
CCAGTACGACCTCGGCCGAGTGGCCCTCGCCCAGGGTCTGCGGGAGTTCG
GCAACGTCAGCGATAGGTGGCACGTTGACAGTCCCGACCCCAGGGGCAGG
CGGCGGGAGTTCGCCGACGGTGTGACTCCGGCCCGGTTCGCGGAACGAGA
ATACGGTAAAGGCCGGAAACGGAATCCCGAGAAAAAGTCTCATTGGGTGA
AACCCGAGGGAGGCTGGGACGGACGTGGGTCCGACGAGAGTCAGGCTAGG
TGGTGGGAGAAGCAGAAGCGCTTGTCCTTAGTTGTGGGGAAGCCTAGACC
TCCCCCGTGTATCCGTAACGCGGTGGAGGAGTTCTGCATGCTGGGGGTGT
CCCCACCCCTGAGGGTGCAGAAGGCAGCGTCCAACCCCGGGATCTTGACC
ATCGAGCCGGAGGACGTGCAGGCGTGGTTGGAGCGAAATCCGCGCGTCTT
GTCGTGATTTTTTTTTTTTAGTTGTGTTTTTACACGTCGGCGGCGGAGTC
CTTGCAAACTGGTGTGACGGTGTGTACGTCATGGACGCGGCAACCGAGAA
TGTGCGGCCGTGATGTGGACAATCTTGCCCATCATAGAGCTGCTGCTACA
AGCGTATTTTGAAGGGAGGGTTGGGAGAGTGAACACATCCATGTGTCTTG
GGTGCTTGGTCGAACATTTGGGCTTGGACTTGCGTGCCTGTGGGCAACGA
GCATCCTGAATTCTGGATGCTTCCGTACGAGCGCTCTGCCGACTGGAGAC
TGTGAAACGCATAGCGGGAACATCTTCTAAAAGTGCTGCTGATGGCTGAT
GGTCGTCAACGTACCGGTGACATATGCCGATGGTGCTGCCTCGTGTACAG
CAA
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Coding sequence (CDS) from alignment at Scaffold_68:313086..317438+

>EsuBft957_14a-0001 ID=EsuBft957_14a-0001|Name=EsuBft957_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1218bp|location=Sequence derived from alignment at Scaffold_68:313086..317438+ (Ectocarpus subulatus male Bft15b)
ATGCTAGCCTCGTACCTCTTGGCCCTCATGAGGTCCGGAGACTGGAAGAC
CGCTCTCGACGTTCGAGAAAGGTATCGCGGCGACAAGGAGGAATTTCAGC
TGTCTCACGCGGAGAGACACGTCCACAAGCTTGACTTTGTCGCCAGAGAG
GAGGCAGTGGTAGACGGTGTTGTGGCGAACGGGCTCGTAGATAACAAACA
GCCCGGCCTGGCGTTGGCATACGTGCTGGAAGTCCTCAAGGCTCGGGAAG
AGGGTAAGGAGGGTGCTAGCGGCAACGGCAACGATAGCGACTTGAAGCAC
TTCATCGACGAGGACAATCACACTGTACTCGCTGGAATAAGAGCTTGCAA
GCAGGCCGGCTCGTGCGAAACCGCCATAGGTTTGCTAGAGGCCTGTGAGG
CGAGATGGGCGAAGGGGCCTCTGGAGCGGGATGCGGGGAGCGGGGGCGGG
AGCGAGGAGGGGCAGTGGGCCCAGTACGAGTGGCGAGCGATGCTGGTCAG
AACAAGGCTGTCCAGGAGACGGTTGTACGACTGCTTGATTTCTGTGCTGG
ATGAGAAGGATCACGACTTTGGCGACATCCGACGGGTGCTGGAGACAGGC
ATGAAGAACGGCGCTGTGTCGTTGATGAAAGACCAACAAGGTGGAACGTC
GGCGGATCAGGCGGTGGACTTCCACGGCTGGTCCACGCGAAGCGCCCGGT
GCATCGTCCGCTGCATCATCGAAGACCTCACCCTCGGCCAGGACTTCCTC
CATCGAACGGGCCAGTACGACCTCGGCCGAGTGGCCCTCGCCCAGGGTCT
GCGGGAGTTCGGCAACGTCAGCGATAGGTGGCACGTTGACAGTCCCGACC
CCAGGGGCAGGCGGCGGGAGTTCGCCGACGGTGTGACTCCGGCCCGGTTC
GCGGAACGAGAATACGGTAAAGGCCGGAAACGGAATCCCGAGAAAAAGTC
TCATTGGGTGAAACCCGAGGGAGGCTGGGACGGACGTGGGTCCGACGAGA
GTCAGGCTAGGTGGTGGGAGAAGCAGAAGCGCTTGTCCTTAGTTGTGGGG
AAGCCTAGACCTCCCCCGTGTATCCGTAACGCGGTGGAGGAGTTCTGCAT
GCTGGGGGTGTCCCCACCCCTGAGGGTGCAGAAGGCAGCGTCCAACCCCG
GGATCTTGACCATCGAGCCGGAGGACGTGCAGGCGTGGTTGGAGCGAAAT
CCGCGCGTCTTGTCGTGA
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