EsuBft957_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft957_4a-0001
Unique NameEsuBft957_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:243139..244769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXH9
ProteomeIdEsuBft957_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length105
Hectar predicted targeting categoryother localisation
Evalue6.29e-166
EggNOG OGs2CMAG@1|root,2QPT0@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameCEP120
KEGG koko:K16459
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007097,GO:0007098,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008022,GO:0008150,GO:0008283,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0021537,GO:0021543,GO:0021846,GO:0021987,GO:0022008,GO:0022027,GO:0022402,GO:0030154,GO:0030900,GO:0030953,GO:0031023,GO:0031122,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045724,GO:0045787,GO:0046605,GO:0046607,GO:0046907,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051726,GO:0060322,GO:0060491,GO:0061351,GO:0065007,GO:0070507,GO:0071840,GO:0090068,GO:0097435,GO:0120032,GO:0120034,GO:0120035,GO:1902017,GO:1902115,GO:1902117
Descriptioninterkinetic nuclear migration
COG categoryS
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft957_4aEsuBft957_4aEctocarpus subulatus male Bft15bgeneScaffold_68 243139..244769 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_4a-0001-exonEsuBft957_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 243139..243809 -
EsuBft957_4a-0001-exonagat-exon-32312Ectocarpus subulatus male Bft15bexonScaffold_68 244388..244769 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_4a-0001-exonagat-three_prime_utr-23480Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 243139..243158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_4a-0001-cdsEsuBft957_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 243159..243809 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_4a-0001-exonagat-five_prime_utr-15284Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_68 244712..244769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_4a-0001EsuBft957_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 243159..244711 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft957_4a-0001 ID=EsuBft957_4a-0001|Name=EsuBft957_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1053bp|location=Sequence derived from alignment at Scaffold_68:243139..244769- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGCTGCTGCTGGTGGTGCTGCCGGTTCGGCGGCAGCAAGACTTCTAAC
AGCAGAGGATGCTCCAAGAGATCACCGTGGTAGTGCGGTCGCTGCGACAC
CTCCCGCAGTCGTTTTTCAACGAGGAAAAGGAGAGGGAACTAGCGCTCAG
ACAGCACGGGCAACAACAGGGGCATCAGCATGGACGGGGGAGCGTCGACT
ACCGGAGGTGCTTGAGAGCGCAGGCAAACATCGCCAACGAGACGCGAGAG
ACGGGGAACTCGGCATGGGGCAGGGGCGTGAGGTCCCGCCAGGCGATGTG
GCTGCGGGGCGCGGACAAGCTGTCGTGGAGCCTGCCCGAGCAACAGTTCA
AGCAGGTCAAGGCGTACACCCCTGTCTGCAAGGTACACGTGTACGCCACC
GACCCCAACTCCCCCACAATGGACACCTCCGATTCGGTGGGCTGGTTCAT
CGTCGACATGCGAGACCTCGCCGGGCAGCGTCAGCAAGAACGCTGGGTCA
AGCTCCAGGGCGCCAGCCCCGCGGAGGTGCTGATATCCTCCCGCCTGGCC
ATGGCGCGCGACCCGCAGGAGGACTCCTGTAGAGAAGGACACGAGCAACG
AGGCCGACCGAACAGCGGCACGGGTGGTCACCGGGGGAATGATTCTGCGA
AACCCCCTGCTTCGAAAGCAAGCTTCGATGGTGGTTCTCCAACGGCCGCG
TCGGAACGAACGATGCCGTTTCCCGTCGCTGCCGCAGCACCAGCAGCAGG
GCTGGAAGACGGCGAGGTTGCCGTCCATACCGGGGTCGACAGCACTGTCT
CCGAATCCGAGGAGCCTTTGGCAGCCTCGACTGCTGTCGACGCGGTGTCC
GACCTCGACGCCCTACCGGTTGGGCCGGGCGCGGACGGGCAGGACGCCCA
GACGTTCTCGCCGGCCATCTCCATCAAGGGGGCCGCGGGACTGTCAGGTC
TGGCGGCTGCGGTGACCGGCAGCGATGGAGGTGGCCCCGGGTTCTGGCTG
AGCTGCTTTATGTTCCGCGTGGTGGTGCAATAGGGATAGGTTCGAGAGCT
TGG
back to top

protein sequence of EsuBft957_4a-0001

>EsuBft957_4 ID=EsuBft957_4|Name=EsuBft957_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=324bp
MLQEITVVVRSLRHLPQSFFNEEKERELALRQHGQQQGHQHGRGSVDYRR
CLRAQANIANETRETGNSAWGRGVRSRQAMWLRGADKLSWSLPEQQFKQV
KAYTPVCKVHVYATDPNSPTMDTSDSVGWFIVDMRDLAGQRQQERWVKLQ
GASPAEVLISSRLAMARDPQEDSCREGHEQRGRPNSGTGGHRGNDSAKPP
ASKASFDGGSPTAASERTMPFPVAAAAPAAGLEDGEVAVHTGVDSTVSES
EEPLAASTAVDAVSDLDALPVGPGADGQDAQTFSPAISIKGAAGLSGLAA
AVTGSDGGGPGFWLSCFMFRVVVQ
back to top

mRNA from alignment at Scaffold_68:243139..244769-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft957_4a-0001 ID=EsuBft957_4a-0001|Name=EsuBft957_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1631bp|location=Sequence derived from alignment at Scaffold_68:243139..244769- (Ectocarpus subulatus male Bft15b)
GCTGCTGCTGCTGGTGGTGCTGCCGGTTCGGCGGCAGCAAGACTTCTAAC
AGCAGAGGATGCTCCAAGAGATCACCGTGGTAGTGCGGTCGCTGCGACAC
CTCCCGCAGTCGTTTTTCAACGAGGAAAAGGAGAGGGAACTAGCGCTCAG
ACAGCACGGGCAACAACAGGGGCATCAGCATGGACGGGGGAGCGTCGACT
ACCGGAGGTGCTTGAGAGCGCAGGCAAACATCGCCAACGAGACGCGAGAG
ACGGGGAACTCGGCATGGGGCAGGGGCGTGAGGTCCCGCCAGGCGATGTG
GCTGCGGGGCGCGGACAAGCTGTCGTGGAGCCTGCCCGAGCAACAGTTCA
AGCAGGTCAAGGCGTACACCCCTGTCTGCAAGGTGATGTGACTTATTTTG
ACTTGTTATTGCATGGTGAAGGAAGAACAGGATAGCAGCACAGTTAGTAG
TCCCTTGAATTCGTACAGTGGAGCAACGTTGTGCATCCTTGGAGCAACAG
CGACGACTTTGCTGTAGTCCGACCCTGGGATGTTCTTGCAGCAGTGATTT
CCCAGAGTTTTTCACAGCTAACCAGAGGGTGGAACAAACATTTGGTCAGT
GCTGCCGGGGGGAGCATCGTCGGTCGCAGCCCTCGCCGTAGCGCGAGTTT
GACATCCGCACAAATTCGCGCAAGGAATTAACGTGGATGTGTTTTTTTCA
CGGGCCCGCTTGGACACTGCTGCTGCTGTCCGTGTTGTACGCCACATAAC
AGCATCAGCGAAGTGAACGAAGCTCAAGGACAGAGAGAGGCCAAACAAAC
ACGGACCAATCCCTTTGGAACCCAACATCCCATGAGAGTTTCTTCTTCTG
CCACCGTTGGAAACGCCCTGCGTTCTTGTTCTTTCCGGCCGACAGCAACT
TCCCTCGCACCTCTCGTTTGTTTCGCTCCCAACATCCCCCCCAACCGCAA
CCGTTTCCAGGTACACGTGTACGCCACCGACCCCAACTCCCCCACAATGG
ACACCTCCGATTCGGTGGGCTGGTTCATCGTCGACATGCGAGACCTCGCC
GGGCAGCGTCAGCAAGAACGCTGGGTCAAGCTCCAGGGCGCCAGCCCCGC
GGAGGTGCTGATATCCTCCCGCCTGGCCATGGCGCGCGACCCGCAGGAGG
ACTCCTGTAGAGAAGGACACGAGCAACGAGGCCGACCGAACAGCGGCACG
GGTGGTCACCGGGGGAATGATTCTGCGAAACCCCCTGCTTCGAAAGCAAG
CTTCGATGGTGGTTCTCCAACGGCCGCGTCGGAACGAACGATGCCGTTTC
CCGTCGCTGCCGCAGCACCAGCAGCAGGGCTGGAAGACGGCGAGGTTGCC
GTCCATACCGGGGTCGACAGCACTGTCTCCGAATCCGAGGAGCCTTTGGC
AGCCTCGACTGCTGTCGACGCGGTGTCCGACCTCGACGCCCTACCGGTTG
GGCCGGGCGCGGACGGGCAGGACGCCCAGACGTTCTCGCCGGCCATCTCC
ATCAAGGGGGCCGCGGGACTGTCAGGTCTGGCGGCTGCGGTGACCGGCAG
CGATGGAGGTGGCCCCGGGTTCTGGCTGAGCTGCTTTATGTTCCGCGTGG
TGGTGCAATAGGGATAGGTTCGAGAGCTTGG
back to top

Coding sequence (CDS) from alignment at Scaffold_68:243139..244769-

>EsuBft957_4a-0001 ID=EsuBft957_4a-0001|Name=EsuBft957_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=975bp|location=Sequence derived from alignment at Scaffold_68:243139..244769- (Ectocarpus subulatus male Bft15b)
ATGCTCCAAGAGATCACCGTGGTAGTGCGGTCGCTGCGACACCTCCCGCA
GTCGTTTTTCAACGAGGAAAAGGAGAGGGAACTAGCGCTCAGACAGCACG
GGCAACAACAGGGGCATCAGCATGGACGGGGGAGCGTCGACTACCGGAGG
TGCTTGAGAGCGCAGGCAAACATCGCCAACGAGACGCGAGAGACGGGGAA
CTCGGCATGGGGCAGGGGCGTGAGGTCCCGCCAGGCGATGTGGCTGCGGG
GCGCGGACAAGCTGTCGTGGAGCCTGCCCGAGCAACAGTTCAAGCAGGTC
AAGGCGTACACCCCTGTCTGCAAGGTACACGTGTACGCCACCGACCCCAA
CTCCCCCACAATGGACACCTCCGATTCGGTGGGCTGGTTCATCGTCGACA
TGCGAGACCTCGCCGGGCAGCGTCAGCAAGAACGCTGGGTCAAGCTCCAG
GGCGCCAGCCCCGCGGAGGTGCTGATATCCTCCCGCCTGGCCATGGCGCG
CGACCCGCAGGAGGACTCCTGTAGAGAAGGACACGAGCAACGAGGCCGAC
CGAACAGCGGCACGGGTGGTCACCGGGGGAATGATTCTGCGAAACCCCCT
GCTTCGAAAGCAAGCTTCGATGGTGGTTCTCCAACGGCCGCGTCGGAACG
AACGATGCCGTTTCCCGTCGCTGCCGCAGCACCAGCAGCAGGGCTGGAAG
ACGGCGAGGTTGCCGTCCATACCGGGGTCGACAGCACTGTCTCCGAATCC
GAGGAGCCTTTGGCAGCCTCGACTGCTGTCGACGCGGTGTCCGACCTCGA
CGCCCTACCGGTTGGGCCGGGCGCGGACGGGCAGGACGCCCAGACGTTCT
CGCCGGCCATCTCCATCAAGGGGGCCGCGGGACTGTCAGGTCTGGCGGCT
GCGGTGACCGGCAGCGATGGAGGTGGCCCCGGGTTCTGGCTGAGCTGCTT
TATGTTCCGCGTGGTGGTGCAATAG
back to top