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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6669.EFX80110 |
| ProteomeId | EsuBft1178_6 |
| Protein domains | IPR004875 |
| Protein domains | PTHR19303 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | jerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1641 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.48e-29 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota,3985B@33154|Opisthokonta,3CCE5@33208|Metazoa,3DTQE@33213|Bilateria,422V0@6656|Arthropoda |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | PDC2 |
| GOs | GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006109,GO:0006140,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0019219,GO:0019220,GO:0019222,GO:0030656,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0042762,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043465,GO:0043467,GO:0043470,GO:0043471,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0045893,GO:0045913,GO:0045935,GO:0045937,GO:0045944,GO:0045981,GO:0046136,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051176,GO:0051193,GO:0051194,GO:0051196,GO:0051197,GO:0051252,GO:0051254,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0070623,GO:0080090,GO:0090180,GO:0097159,GO:1900542,GO:1900544,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1903578,GO:1903580,GO:1990837,GO:2000112,GO:2001141,GO:2001154,GO:2001172 |
| Description | DDE superfamily endonuclease |
| COG category | BD |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1178_6a-0001 ID=EsuBft1178_6a-0001|Name=EsuBft1178_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1641bp|location=Sequence derived from alignment at Scaffold_68:130371..132924- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AATATTCAACACACACACACATCACACACGCACACACCACGACACCAGAG
GACAGACGCCACAGTGACGAAGTGTACACCTGCTGTTGCAGACCTTAAGA
GCTCTAAGCAGAGGTGCACCATGCCTTGTGCGGAAGGTGAATTGTGTCTT
CAACAGGACAGAACGCCGGAAGACTCTCATGGCCACGTCTGCCAGGGAGG
ATGTGGAGGGCGGCTCCACGGCAACTGCGGCAGCGTGTTTGACGACATCG
AGACGCACCGTATATGCAGCACGTGCGTTACCAGGATTGGCAAGCGCAAA
GCGGCAGCAGCTAACGGTGCTGGGGCGGGACCATCTAAACGCCAGAAGGA
CAAGAGCGGTGGGAGCAAGAAGGGGGGTGTTCGTGCGCGCCCGGACAACA
ACACGAAGCTTGAGATTCTCAAGCTGCTGGATGCGAAGGTCGCTCAAGTA
CAGAATGCAGAACGCTTCGGGTGCTCGGAGCGGTTTGGTAGGACTGTGAA
GGCTGACCGGAAGAAGGTGGAGGCTGCGACTGCTGCAGGCGGCGGCACCC
AGAAAACCGCGCGCAAGGGAGACTTTCCGGAGGTGGATGCGATAGCTCTT
TATCTGCTCGCCAAAGCCCGGAAGGCCAAGGTACCCGTCACACGCGATGT
CCTTCGAAGCTTCGGCCGTTCCGCCAGGACAACCCTGCTGGCTGACACCG
CAACTTCTGCAGCAGTAAGGGCGAGGTGGAAGCTCTTGCCCAGGCGCACG
TACCTTTCCACCTCGGAGGATCGGAAGACGGCGCGGGGTCCAAAGAGCAT
GTACTTCAAGGACCGACTGGCTGCCATCATGTGCTGCAATGCCGGCGGCA
CTGCGAAGGTGGACATGGCCATCATCGGAAAGGCAAAGGAACCCCGTTGC
TTCAAGGACGGGGGTTCACCTCTGAAGTACTTCTCGCAGGCCAACGCGTG
GTCCGACTCTGCGACGTTCCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGT
TCGTTCGGCGCTTCACTCACGAACCTGTGCTGCTGATGATGGACGGCTGT
TCGTCTCACGGTGATCTAGTGGATGATCGNTTCTCGAGAAAGCATGGGCC
AGCGTCACCGCCCAGGATATCGCCAGGTGAGGCTCTCACGGAGACTGTCA
ACAAGATGAGCACGAGCGTCGGCGACGCGCACGAGCAGCGAGTCGGCACC
GTAGACGATGAGATCAGCGAATTCTTCGCAGAACTCGACATCGAACCCGG
AAAGCCGGTCGAGGGAGAAGCGGTGAGCGCCATTCAGGGGTGGGGTACCC
TCGAGGACGACGATGAGGTGGCAGAGGCTCTTCGACTGGACGCAGTGGAC
GAAATGGCGGCACTGCTGGCTGGAACGCAGGTGACAACAGGCGGCGAGGA
GGAGGACGAAGAGGAAGGCAGTGGCGATGACAACACGGGGCCCGAGCGCC
GTGCTCCACCTGCATATGATGAGCTGTCGCCTCACTTCAGCGTCCAAGAA
GCGGCAGCAGATGAGAGTGGCAACGGAGATGCGGCGTTCTTCCTAACGAA
AGCGAAGATGGTAATGATTGCAGCGCATTCCGCTGAGCGGGTGCGCCAGG
CAGACATGAGGGAGTTTGTTGCTCCTACGGAGCAAGGTTGA back to topprotein sequence of EsuBft1178_6a-0001 >EsuBft1178_6 ID=EsuBft1178_6|Name=EsuBft1178_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=506bp
MPCAEGELCLQQDRTPEDSHGHVCQGGCGGRLHGNCGSVFDDIETHRICS
TCVTRIGKRKAAAANGAGAGPSKRQKDKSGGSKKGGVRARPDNNTKLEIL
KLLDAKVAQVQNAERFGCSERFGRTVKADRKKVEAATAAGGGTQKTARKG
DFPEVDAIALYLLAKARKAKVPVTRDVLRSFGRSARTTLLADTATSAAVR
ARWKLLPRRTYLSTSEDRKTARGPKSMYFKDRLAAIMCCNAGGTAKVDMA
IIGKAKEPRCFKDGGSPLKYFSQANAWSDSATFLKWWLEVFLPFVRRFTH
EPVLLMMDGCSSHGDLVDDRFSRKHGPASPPRISPGEALTETVNKMSTSV
GDAHEQRVGTVDDEISEFFAELDIEPGKPVEGEAVSAIQGWGTLEDDDEV
AEALRLDAVDEMAALLAGTQVTTGGEEEDEEEGSGDDNTGPERRAPPAYD
ELSPHFSVQEAAADESGNGDAAFFLTKAKMVMIAAHSAERVRQADMREFV
APTEQG back to topmRNA from alignment at Scaffold_68:130371..132924- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1178_6a-0001 ID=EsuBft1178_6a-0001|Name=EsuBft1178_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2554bp|location=Sequence derived from alignment at Scaffold_68:130371..132924- (Ectocarpus subulatus male Bft15b)
AATATTCAACACACACACACATCACACACGCACACACCACGACACCAGAG
GACAGACGCCACAGTGACGAAGTGTACACCTGCTGTTGCAGACCTTAAGA
GCTCTAAGCAGAGGTGCACCATGCCTTGTGCGGAAGGTGAATTGTGTCTT
CAACAGGACAGAACGCCGGAAGACTCTCATGGCCACGTCTGCCAGGGAGG
ATGTGGAGGGCGGCTCCACGGCAACTGCGGCAGCGTGTTTGACGACATCG
AGACGCACCGTATATGCAGCACGTGCGTTACCAGGATTGGCAAGCGCAAA
GCGGCAGCAGCTAACGGTGCTGGGGCGGGACCATCTAAACGCCAGAAGGA
CAAGAGCGGTGGGAGCAAGAAGGGGGGTGTTCGTGCGCGCCCGGACAACA
ACACGAAGCTTGAGATTCTCAAGCTGCTGGATGCGAAGGTCGCTCAAGTA
CAGAATGCAGAACGCTTCGGGTGCTCGGAGCGGTTTGGTAGGACTGTGAA
GGCTGACCGGAAGAAGGTGGAGGCTGCGACTGCTGCAGGCGGCGGCACCC
AGAAAACCGCGCGCAAGGGAGACTTTCCGGAGGTGAGCTTTCTTTTCCCC
GCCTTTTTTTTCAAAATTGTTGCGGGCCGCTGTTCACTGACCTTTTTTGT
TCGTCCATGCTTTTTTTCTTTTCGTCGTTCTTCATTTTTTTTTCACTGGT
ACAACAGATGTTGTCTCTCTTGTTTTTTCTGTCCATCGTTTGTCTGTCTC
GGTTTTCTCACATATGTATGTCCGCTTTCATCCTCCTTTCCTTTCTGTGT
GGCTAGTCCGCTGTTGATGTCCCCCTCGTTACGTCTTTCCTATTCTTATA
TTTTTTATGTACTCCGTATTATATGTACAGCAGACATAATATATATATAA
TCCATTCCTTTTTTTTTGTGTGTTTTGTTTTGTCTCTCTTTAAGGTACGA
CTGCTGTGTTGTCCCGCCTAACCGCGCCGCGCAGTGTAGGATGCACACTA
ATGTTCGAAACACATGGTAAGACCTTCTGCTTGTTTGCTCGTTTTTTGGC
GGCAGGTGGATGCGATAGCTCTTTATCTGCTCGCCAAAGCCCGGAAGGCC
AAGGTACCCGTCACACGCGATGTCCTTCGAAGCTTCGGCCGTTCCGCCAG
GACAACCCTGCTGGCTGACACCGCAACTTCTGCAGCAGTAAGGGCGAGGG
TCGAGGACTTCAAGGCCNNNNNNNNNNNNNNNNNACCCGGCTAGGTTCAT
CTTCAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCTTGCCCAGGCGCA
CGTACCTTTCCACCTCGGAGGATCGGAAGACGGCGCGGGGTCCAAAGAGC
ATGTACTTCAAGGACCGACTGGCTGCCATCATGTGCTGCAATGCCGGCGG
CACTGCGAAGGTGGACATGGCCATCATCGGAAAGGCAAAGGAACCCCGTT
GCTTCAAGGACGGGGGTTCACCTCTGAAGTACTTCTCGCAGGCCAACGCG
TGGTCCGACTCTGCGACGTTCCTCAAGTGGTGGCTTGAAGTCTTCCTCCC
GTTCGTTCGGCGCTTCACTCACGAACCTGTGCTGCTGATGATGGACGGCT
GTTCGTCTCACGGTGATCTAGTGGATGATCGNTTCTCGAGAAAGCATGGG
CCAGCGTCACCGCCCAGGATATCGCCAGGTGAGGTTTGAACATGTGGTAT
TGCTGTTTTTTTCAGCTCCCGCATGTGCGCGTGGCTTTGGTGGTGCGATA
CGTGGGGACGGTTGTACGGATATTTTCGCATGGGTTTCCTTTTTTTCGAC
AGAGTATTGCAGCACCCGGACATGCCCATTTCTCCTGTTCTAAGAAAGGG
TCCTCTCTCGCATTCCTATGAGTCGTTCTTCGTCACTCCCGTCCAACATC
GCTTGTCCACCCAAAAACGGATGCATTGCATTTTCTGCTACCTGGGACCA
GGTGCTTTGTCAAGGCCGACACGCTTCCTCCGGAGATGGCGGCTGAGCTC
ACCACGGAAAGACTCGATTTAGCATCGCCGAGCCTGACTTGAAGGCTCTC
ACGGAGACTGTCAACAAGATGAGCACGAGCGTCGGCGACGCGCACGAGCA
GCGAGTCGGCACCGTAGACGATGAGATCAGCGAATTCTTCGCAGAACTCG
ACATCGAACCCGGAAAGCCGGTCGAGGGAGAAGCGGTGAGCGCCATTCAG
GGGTGGGGTACCCTCGAGGACGACGATGAGGTGGCAGAGGCTCTTCGACT
GGACGCAGTGGACGAAATGGCGGCACTGCTGGCTGGAACGCAGGTGACAA
CAGGCGGCGAGGAGGAGGACGAAGAGGAAGGCAGTGGCGATGACAACACG
GGGCCCGAGCGCCGTGCTCCACCTGCATATGATGAGCTGTCGCCTCACTT
CAGCGTCCAAGAAGCGGCAGCAGATGAGAGTGGCAACGGAGATGCGGCGT
TCTTCCTAACGAAAGCGAAGATGGTAATGATTGCAGCGCATTCCGCTGAG
CGGGTGCGCCAGGCAGACATGAGGGAGTTTGTTGCTCCTACGGAGCAAGG
TTGA back to topCoding sequence (CDS) from alignment at Scaffold_68:130371..132924- >EsuBft1178_6a-0001 ID=EsuBft1178_6a-0001|Name=EsuBft1178_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1521bp|location=Sequence derived from alignment at Scaffold_68:130371..132924- (Ectocarpus subulatus male Bft15b)
ATGCCTTGTGCGGAAGGTGAATTGTGTCTTCAACAGGACAGAACGCCGGA
AGACTCTCATGGCCACGTCTGCCAGGGAGGATGTGGAGGGCGGCTCCACG
GCAACTGCGGCAGCGTGTTTGACGACATCGAGACGCACCGTATATGCAGC
ACGTGCGTTACCAGGATTGGCAAGCGCAAAGCGGCAGCAGCTAACGGTGC
TGGGGCGGGACCATCTAAACGCCAGAAGGACAAGAGCGGTGGGAGCAAGA
AGGGGGGTGTTCGTGCGCGCCCGGACAACAACACGAAGCTTGAGATTCTC
AAGCTGCTGGATGCGAAGGTCGCTCAAGTACAGAATGCAGAACGCTTCGG
GTGCTCGGAGCGGTTTGGTAGGACTGTGAAGGCTGACCGGAAGAAGGTGG
AGGCTGCGACTGCTGCAGGCGGCGGCACCCAGAAAACCGCGCGCAAGGGA
GACTTTCCGGAGGTGGATGCGATAGCTCTTTATCTGCTCGCCAAAGCCCG
GAAGGCCAAGGTACCCGTCACACGCGATGTCCTTCGAAGCTTCGGCCGTT
CCGCCAGGACAACCCTGCTGGCTGACACCGCAACTTCTGCAGCAGTAAGG
GCGAGGTGGAAGCTCTTGCCCAGGCGCACGTACCTTTCCACCTCGGAGGA
TCGGAAGACGGCGCGGGGTCCAAAGAGCATGTACTTCAAGGACCGACTGG
CTGCCATCATGTGCTGCAATGCCGGCGGCACTGCGAAGGTGGACATGGCC
ATCATCGGAAAGGCAAAGGAACCCCGTTGCTTCAAGGACGGGGGTTCACC
TCTGAAGTACTTCTCGCAGGCCAACGCGTGGTCCGACTCTGCGACGTTCC
TCAAGTGGTGGCTTGAAGTCTTCCTCCCGTTCGTTCGGCGCTTCACTCAC
GAACCTGTGCTGCTGATGATGGACGGCTGTTCGTCTCACGGTGATCTAGT
GGATGATCGNTTCTCGAGAAAGCATGGGCCAGCGTCACCGCCCAGGATAT
CGCCAGGTGAGGCTCTCACGGAGACTGTCAACAAGATGAGCACGAGCGTC
GGCGACGCGCACGAGCAGCGAGTCGGCACCGTAGACGATGAGATCAGCGA
ATTCTTCGCAGAACTCGACATCGAACCCGGAAAGCCGGTCGAGGGAGAAG
CGGTGAGCGCCATTCAGGGGTGGGGTACCCTCGAGGACGACGATGAGGTG
GCAGAGGCTCTTCGACTGGACGCAGTGGACGAAATGGCGGCACTGCTGGC
TGGAACGCAGGTGACAACAGGCGGCGAGGAGGAGGACGAAGAGGAAGGCA
GTGGCGATGACAACACGGGGCCCGAGCGCCGTGCTCCACCTGCATATGAT
GAGCTGTCGCCTCACTTCAGCGTCCAAGAAGCGGCAGCAGATGAGAGTGG
CAACGGAGATGCGGCGTTCTTCCTAACGAAAGCGAAGATGGTAATGATTG
CAGCGCATTCCGCTGAGCGGGTGCGCCAGGCAGACATGAGGGAGTTTGTT
GCTCCTACGGAGCAAGGTTGA back to top
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