EsuBft90_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft90_11a-0001
Unique NameEsuBft90_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_65contigScaffold_65:306029..306499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft90_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length47
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft90_11aEsuBft90_11aEctocarpus subulatus male Bft15bgeneScaffold_65 306029..306499 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_11a-0001-exonEsuBft90_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_65 306029..306499 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_11a-0001-exonagat-five_prime_utr-14910Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_65 306029..306061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_11a-0001-cdsEsuBft90_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_65 306062..306370 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_11a-0001-exonagat-three_prime_utr-22962Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_65 306371..306499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_11a-0001EsuBft90_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_65 306062..306370 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft90_11a-0001 ID=EsuBft90_11a-0001|Name=EsuBft90_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=471bp|location=Sequence derived from alignment at Scaffold_65:306029..306499+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCTTGACCGAGTACGGAGGGCAGTATGGGGGATGCTGCATGACAATCA
TGCCTGCGTCGTATCGAGGTCTTCAGAAAGGTTGGCGAGAATGATGACCA
TAATGGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGAAGAAGAAG
ACGAAGACGCTCCTGATGCGCACGGAGGACAAGCCGACTACAACATCACA
GCCCCCCCCGCCTCCACCGCTGACCATCGAAGCCGCGGGACAGAAATACG
CCCAGACGACCCAGTTTCGGTTCCTCGGTGGCCTCGTCAACGCACACGGC
GACCTCACCCGGAAGATCAACTACAGGAGCAAAGGAGCGTAGGCGTGCCT
CAGGCGATATGGCCGGGAGCTCTTTGACAGGCCGAACGCGCCATTCCGAC
TCAAGATCCGCCTGCTCCAGGCGGAGGAGATGGAGGCACTGCTGTACGGC
TGCATGACATGGTCACCACTC
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protein sequence of EsuBft90_11a-0001

>EsuBft90_11 ID=EsuBft90_11|Name=EsuBft90_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=102bp
MLHDNHACVVSRSSERLARMMTIMVEVFGEFGLTVSKKKTKTLLMRTEDK
PTTTSQPPPPPPLTIEAAGQKYAQTTQFRFLGGLVNAHGDLTRKINYRSK
GA
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mRNA from alignment at Scaffold_65:306029..306499+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft90_11a-0001 ID=EsuBft90_11a-0001|Name=EsuBft90_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=471bp|location=Sequence derived from alignment at Scaffold_65:306029..306499+ (Ectocarpus subulatus male Bft15b)
CCCCTTGACCGAGTACGGAGGGCAGTATGGGGGATGCTGCATGACAATCA
TGCCTGCGTCGTATCGAGGTCTTCAGAAAGGTTGGCGAGAATGATGACCA
TAATGGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGAAGAAGAAG
ACGAAGACGCTCCTGATGCGCACGGAGGACAAGCCGACTACAACATCACA
GCCCCCCCCGCCTCCACCGCTGACCATCGAAGCCGCGGGACAGAAATACG
CCCAGACGACCCAGTTTCGGTTCCTCGGTGGCCTCGTCAACGCACACGGC
GACCTCACCCGGAAGATCAACTACAGGAGCAAAGGAGCGTAGGCGTGCCT
CAGGCGATATGGCCGGGAGCTCTTTGACAGGCCGAACGCGCCATTCCGAC
TCAAGATCCGCCTGCTCCAGGCGGAGGAGATGGAGGCACTGCTGTACGGC
TGCATGACATGGTCACCACTC
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Coding sequence (CDS) from alignment at Scaffold_65:306029..306499+

>EsuBft90_11a-0001 ID=EsuBft90_11a-0001|Name=EsuBft90_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=309bp|location=Sequence derived from alignment at Scaffold_65:306029..306499+ (Ectocarpus subulatus male Bft15b)
ATGCTGCATGACAATCATGCCTGCGTCGTATCGAGGTCTTCAGAAAGGTT
GGCGAGAATGATGACCATAATGGTTGAGGTGTTCGGGGAGTTCGGGCTAA
CGGTGTCGAAGAAGAAGACGAAGACGCTCCTGATGCGCACGGAGGACAAG
CCGACTACAACATCACAGCCCCCCCCGCCTCCACCGCTGACCATCGAAGC
CGCGGGACAGAAATACGCCCAGACGACCCAGTTTCGGTTCCTCGGTGGCC
TCGTCAACGCACACGGCGACCTCACCCGGAAGATCAACTACAGGAGCAAA
GGAGCGTAG
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