EsuBft1387_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1387_11a-0001
Unique Name	EsuBft1387_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:455550..457105 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1387_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	155
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_11a	EsuBft1387_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 455550..457105 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_11a-0001-exon	EsuBft1387_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 455550..457105 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_11a-0001-cds	EsuBft1387_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 455550..455777 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_11a-0001-exon	agat-three_prime_utr-3475	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 455778..457105 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_11a-0001	EsuBft1387_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 455550..455777 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:455550..457105+
coding sequence from alignment at Scaffold_630:455550..457105+

spliced messenger RNA

>EsuBft1387_11a-0001 ID=EsuBft1387_11a-0001|Name=EsuBft1387_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1556bp|location=Sequence derived from alignment at Scaffold_630:455550..457105+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCACGGATCTCCACGCGGTCGGGGAGCGGCAGGGCTGCCGCTAG
GCAAGAGGGGCTGGGCCGAGCGGCAACAACCTTCACGTACGAGGAGACCT
CTAGGACGATCAGCAGAGAGTCCGACGGCACGCGACTTGACCCGCAGCGT
GTCTCGTACTGTAGCGAGGTGCAGGTCGTCACGCGAGCGCGATCGACAGA
CACCCGTGACGCTCCCGGCGAGACCTAAGTGGCCACTGTCCGCGGACCGG
GGTATGGACAGAAGGGCGAGCAGCAGCGGCAGCGCGACGAGGCCGTAGGC
GAACAACAACAGCTGTGAATGACGATTGATGATCTGGACTGGTGAGGGTT
CGCGAGCGTTGTCGCCAGCACCTCGGCGAGGCACGGATCGACGTGAGCAA
TATCCCGGTCCGCGACATTCATCAACGACAACTCCACAGCTTTCGCGTCG
AAGTGGTTTGATCCCGCCATCAGCTGTATATCCACCCACTTCGCCCCACC
AGCCGTCATGCCGGACTTCCTGCCGGCGGTCACCATCGAGCGGACAGAGA
CGTCTCGCTTTATCGGCAGGGGCGGGAATCTGCGCGGCAGTGTACTGTCG
CCCGTTATGTGGCGAGCACCAGCACCTATCGCCGTCAAAGAGCCATCCCG
TGGGTCTACGGCGGAACACGGAAGCGCGAGCTCGGGTACCAAAGGGGGCG
GAGGTGGAGGCGGAGGCGGGGGTGATCTCCGGAGACAGGGATAATAGTCA
CACCGCCTGATGTGTCAACGGGGGAGGGGGCGAGGGGGCGCGGGAGTGAG
GCGCACTCCGCAGGAGCGGACGGTACGACGCCCAAGTCTGCCGATTTCCT
TACCCATGGAATCGGCGAACAGGGGCGCGGGTCTACGTAGATTGGGGTTG
AGGGAGGCTACGCCGGGCAGCAGAGAGAGAACGAGGTCAACGGGAACGCC
CGACGGCGCACCCAGACAAGCTTGGGCCGTTATCGATAAATATAGACGAG
GTGACCGGACCGCAGTCAGGCGTGAGAGCAAACAGCGGTGCAGTTGCTCT
TCTGGTGTAGTTGTTGTCGTTATAGACGAGGTGACCGGACCGCAGTCAGG
CGTGAGAGCAAACAGCGGTGCAGTTGCTCTTCTGGTGTAGTTGTTGTCGC
GTCATGCACCGTTCATCTGACTCCGTACCGTTTGCTTCGTAAGGCTTTGC
TGGAGCAGTTTGGGCTCTGAAGTTCAGCACGGCTCCTGTGCGGCTAGGGG
TATGATCGCCAACCGGGGGTTCAAGTTGGATTCCTTTTGGCAGATCGGAG
GAGCGACGTTGATAGGTGCAGGCGGAGACCCTGCAGAACGTGAAACTCAG
AGAGTAGAACGAGCTGTGCAATTCAAAATATCGCAGAAGACTCGCTACGG
ATATCGTGGAACTCACGGATGGCAGCAGCAACGAGTCAGCCGGGAGAAGA
AACTGTACGGGGTACAATGTCAGTCGACTTCTACCGTAGATATCCAGAAA
TTGACCTCGATGTGGGTGTTGCAGATTGGCGCGTACCATTTGGGGGCTTG
GTAAGT

protein sequence of EsuBft1387_11a-0001

>EsuBft1387_11 ID=EsuBft1387_11|Name=EsuBft1387_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=75bp
MSARISTRSGSGRAAARQEGLGRAATTFTYEETSRTISRESDGTRLDPQR
VSYCSEVQVVTRARSTDTRDAPGET

mRNA from alignment at Scaffold_630:455550..457105+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1387_11a-0001 ID=EsuBft1387_11a-0001|Name=EsuBft1387_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1556bp|location=Sequence derived from alignment at Scaffold_630:455550..457105+ (Ectocarpus subulatus male Bft15b)
ATGTCGGCACGGATCTCCACGCGGTCGGGGAGCGGCAGGGCTGCCGCTAG
GCAAGAGGGGCTGGGCCGAGCGGCAACAACCTTCACGTACGAGGAGACCT
CTAGGACGATCAGCAGAGAGTCCGACGGCACGCGACTTGACCCGCAGCGT
GTCTCGTACTGTAGCGAGGTGCAGGTCGTCACGCGAGCGCGATCGACAGA
CACCCGTGACGCTCCCGGCGAGACCTAAGTGGCCACTGTCCGCGGACCGG
GGTATGGACAGAAGGGCGAGCAGCAGCGGCAGCGCGACGAGGCCGTAGGC
GAACAACAACAGCTGTGAATGACGATTGATGATCTGGACTGGTGAGGGTT
CGCGAGCGTTGTCGCCAGCACCTCGGCGAGGCACGGATCGACGTGAGCAA
TATCCCGGTCCGCGACATTCATCAACGACAACTCCACAGCTTTCGCGTCG
AAGTGGTTTGATCCCGCCATCAGCTGTATATCCACCCACTTCGCCCCACC
AGCCGTCATGCCGGACTTCCTGCCGGCGGTCACCATCGAGCGGACAGAGA
CGTCTCGCTTTATCGGCAGGGGCGGGAATCTGCGCGGCAGTGTACTGTCG
CCCGTTATGTGGCGAGCACCAGCACCTATCGCCGTCAAAGAGCCATCCCG
TGGGTCTACGGCGGAACACGGAAGCGCGAGCTCGGGTACCAAAGGGGGCG
GAGGTGGAGGCGGAGGCGGGGGTGATCTCCGGAGACAGGGATAATAGTCA
CACCGCCTGATGTGTCAACGGGGGAGGGGGCGAGGGGGCGCGGGAGTGAG
GCGCACTCCGCAGGAGCGGACGGTACGACGCCCAAGTCTGCCGATTTCCT
TACCCATGGAATCGGCGAACAGGGGCGCGGGTCTACGTAGATTGGGGTTG
AGGGAGGCTACGCCGGGCAGCAGAGAGAGAACGAGGTCAACGGGAACGCC
CGACGGCGCACCCAGACAAGCTTGGGCCGTTATCGATAAATATAGACGAG
GTGACCGGACCGCAGTCAGGCGTGAGAGCAAACAGCGGTGCAGTTGCTCT
TCTGGTGTAGTTGTTGTCGTTATAGACGAGGTGACCGGACCGCAGTCAGG
CGTGAGAGCAAACAGCGGTGCAGTTGCTCTTCTGGTGTAGTTGTTGTCGC
GTCATGCACCGTTCATCTGACTCCGTACCGTTTGCTTCGTAAGGCTTTGC
TGGAGCAGTTTGGGCTCTGAAGTTCAGCACGGCTCCTGTGCGGCTAGGGG
TATGATCGCCAACCGGGGGTTCAAGTTGGATTCCTTTTGGCAGATCGGAG
GAGCGACGTTGATAGGTGCAGGCGGAGACCCTGCAGAACGTGAAACTCAG
AGAGTAGAACGAGCTGTGCAATTCAAAATATCGCAGAAGACTCGCTACGG
ATATCGTGGAACTCACGGATGGCAGCAGCAACGAGTCAGCCGGGAGAAGA
AACTGTACGGGGTACAATGTCAGTCGACTTCTACCGTAGATATCCAGAAA
TTGACCTCGATGTGGGTGTTGCAGATTGGCGCGTACCATTTGGGGGCTTG
GTAAGT

Coding sequence (CDS) from alignment at Scaffold_630:455550..457105+

>EsuBft1387_11a-0001 ID=EsuBft1387_11a-0001|Name=EsuBft1387_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=228bp|location=Sequence derived from alignment at Scaffold_630:455550..457105+ (Ectocarpus subulatus male Bft15b)
ATGTCGGCACGGATCTCCACGCGGTCGGGGAGCGGCAGGGCTGCCGCTAG
GCAAGAGGGGCTGGGCCGAGCGGCAACAACCTTCACGTACGAGGAGACCT
CTAGGACGATCAGCAGAGAGTCCGACGGCACGCGACTTGACCCGCAGCGT
GTCTCGTACTGTAGCGAGGTGCAGGTCGTCACGCGAGCGCGATCGACAGA
CACCCGTGACGCTCCCGGCGAGACCTAA