EsuBft2190_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2190_8a-0001
Unique NameEsuBft2190_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:121311..122126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7070.TC009115-PA
ProteomeIdEsuBft2190_8
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length816
Hectar predicted targeting categoryother localisation
Evalue3.29e-23
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0097159
GO1901363
GO0044424
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_8aEsuBft2190_8aEctocarpus subulatus male Bft15bgeneScaffold_630 121311..122126 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_8a-0001-exonEsuBft2190_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 121311..122126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_8a-0001-cdsEsuBft2190_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 121311..122126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_8a-0001EsuBft2190_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 121311..122126 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2190_8a-0001 ID=EsuBft2190_8a-0001|Name=EsuBft2190_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=816bp|location=Sequence derived from alignment at Scaffold_630:121311..122126- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCGCCTGCAAGTCACCAGAGCTAGCACGCGCGGGAAGCCCACCAG
CGACAATCAGATCGACGTCAACTTGGTTCCTGCCGATCTGCAAGTCACCA
TGAACGACCGCGGTCGAGCCCATGCTGCAACCGGCCGCATGGAGCCATCC
GGTATTTCCTTCACTCAGCTGGTTGAGATAGCCGATCAAGCCCAGCTCCC
ATGCGCTGGCGATACTGAGGATTTTGCCCACGCGGCGGAAGACCCCTTCA
CGGTGCGGCGTGCTCACGCCTACGTCACGACCACTCACGACCACCACGGG
ATCTTGGAGGAGACAAATCAAGTGATCGAAATCCCCAACTCCTACGACGA
AGCCATGAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAAGG
AAATGGACAATCTACGGAAACACAACGTCTACAATCTGGTGCCCCTCAGC
AGCGTTCCCAAGGGAGAGAAGATCCTCGCAACGAAATTCGTCTTCAAGAA
AAACCTGGACGGACGCTTCAAAGCTCGCCTGGTAGTAGGAGGACATCGTC
AGGAGCCAGGACAGGATTGCGGACGCAGCAACGCCCCAGGATGGCGTATC
GGGAGCATTCACATGACGTGCGTCATTGGCTGCCACGAAAACTGGCCCAT
CTACCAGCTGGACGTTGTCGTTGCCTTCCTGAACGCCCTCTTCGACAGAG
ACGTGAACGTCAGACCCGCCCCCGGTACATCCGCCAAGAACTCCGCGACA
GGAGAACTCATGGTGTACAAACTAGAACGGAGCCTCTACGGCCTATCGCA
GTCGCCGGCGCTCTGA
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protein sequence of EsuBft2190_8a-0001

>EsuBft2190_8 ID=EsuBft2190_8|Name=EsuBft2190_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=271bp
MRRLQVTRASTRGKPTSDNQIDVNLVPADLQVTMNDRGRAHAATGRMEPS
GISFTQLVEIADQAQLPCAGDTEDFAHAAEDPFTVRRAHAYVTTTHDHHG
ILEETNQVIEIPNSYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLS
SVPKGEKILATKFVFKKNLDGRFKARLVVGGHRQEPGQDCGRSNAPGWRI
GSIHMTCVIGCHENWPIYQLDVVVAFLNALFDRDVNVRPAPGTSAKNSAT
GELMVYKLERSLYGLSQSPAL
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mRNA from alignment at Scaffold_630:121311..122126-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2190_8a-0001 ID=EsuBft2190_8a-0001|Name=EsuBft2190_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=816bp|location=Sequence derived from alignment at Scaffold_630:121311..122126- (Ectocarpus subulatus male Bft15b)
ATGCGGCGCCTGCAAGTCACCAGAGCTAGCACGCGCGGGAAGCCCACCAG
CGACAATCAGATCGACGTCAACTTGGTTCCTGCCGATCTGCAAGTCACCA
TGAACGACCGCGGTCGAGCCCATGCTGCAACCGGCCGCATGGAGCCATCC
GGTATTTCCTTCACTCAGCTGGTTGAGATAGCCGATCAAGCCCAGCTCCC
ATGCGCTGGCGATACTGAGGATTTTGCCCACGCGGCGGAAGACCCCTTCA
CGGTGCGGCGTGCTCACGCCTACGTCACGACCACTCACGACCACCACGGG
ATCTTGGAGGAGACAAATCAAGTGATCGAAATCCCCAACTCCTACGACGA
AGCCATGAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAAGG
AAATGGACAATCTACGGAAACACAACGTCTACAATCTGGTGCCCCTCAGC
AGCGTTCCCAAGGGAGAGAAGATCCTCGCAACGAAATTCGTCTTCAAGAA
AAACCTGGACGGACGCTTCAAAGCTCGCCTGGTAGTAGGAGGACATCGTC
AGGAGCCAGGACAGGATTGCGGACGCAGCAACGCCCCAGGATGGCGTATC
GGGAGCATTCACATGACGTGCGTCATTGGCTGCCACGAAAACTGGCCCAT
CTACCAGCTGGACGTTGTCGTTGCCTTCCTGAACGCCCTCTTCGACAGAG
ACGTGAACGTCAGACCCGCCCCCGGTACATCCGCCAAGAACTCCGCGACA
GGAGAACTCATGGTGTACAAACTAGAACGGAGCCTCTACGGCCTATCGCA
GTCGCCGGCGCTCTGA
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Coding sequence (CDS) from alignment at Scaffold_630:121311..122126-

>EsuBft2190_8a-0001 ID=EsuBft2190_8a-0001|Name=EsuBft2190_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=816bp|location=Sequence derived from alignment at Scaffold_630:121311..122126- (Ectocarpus subulatus male Bft15b)
ATGCGGCGCCTGCAAGTCACCAGAGCTAGCACGCGCGGGAAGCCCACCAG
CGACAATCAGATCGACGTCAACTTGGTTCCTGCCGATCTGCAAGTCACCA
TGAACGACCGCGGTCGAGCCCATGCTGCAACCGGCCGCATGGAGCCATCC
GGTATTTCCTTCACTCAGCTGGTTGAGATAGCCGATCAAGCCCAGCTCCC
ATGCGCTGGCGATACTGAGGATTTTGCCCACGCGGCGGAAGACCCCTTCA
CGGTGCGGCGTGCTCACGCCTACGTCACGACCACTCACGACCACCACGGG
ATCTTGGAGGAGACAAATCAAGTGATCGAAATCCCCAACTCCTACGACGA
AGCCATGAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAAGG
AAATGGACAATCTACGGAAACACAACGTCTACAATCTGGTGCCCCTCAGC
AGCGTTCCCAAGGGAGAGAAGATCCTCGCAACGAAATTCGTCTTCAAGAA
AAACCTGGACGGACGCTTCAAAGCTCGCCTGGTAGTAGGAGGACATCGTC
AGGAGCCAGGACAGGATTGCGGACGCAGCAACGCCCCAGGATGGCGTATC
GGGAGCATTCACATGACGTGCGTCATTGGCTGCCACGAAAACTGGCCCAT
CTACCAGCTGGACGTTGTCGTTGCCTTCCTGAACGCCCTCTTCGACAGAG
ACGTGAACGTCAGACCCGCCCCCGGTACATCCGCCAAGAACTCCGCGACA
GGAGAACTCATGGTGTACAAACTAGAACGGAGCCTCTACGGCCTATCGCA
GTCGCCGGCGCTCTGA
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