EsuBft101_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft101_16a-0001
Unique NameEsuBft101_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:635186..639625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G0R0
ProteomeIdEsuBft101_16
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length121
Hectar predicted targeting categoryother localisation
Evalue3.49e-181
EggNOG OGsKOG1267@1|root,KOG1267@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K15031,ko:K15032
Descriptiontermination of mitochondrial transcription
COG categoryS
BRITEko00000,ko03012,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft101_16aEsuBft101_16aEctocarpus subulatus male Bft15bgeneScaffold_627 635186..639625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_16a-0001EsuBft101_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 635186..639625 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_16a-0001-exonagat-exon-23876Ectocarpus subulatus male Bft15bexonScaffold_627 635186..635198 -
EsuBft101_16a-0001-exonagat-exon-23875Ectocarpus subulatus male Bft15bexonScaffold_627 635264..635445 -
EsuBft101_16a-0001-exonagat-exon-23873Ectocarpus subulatus male Bft15bexonScaffold_627 636491..636910 -
EsuBft101_16a-0001-exonagat-exon-23874Ectocarpus subulatus male Bft15bexonScaffold_627 638193..638291 -
EsuBft101_16a-0001-exonEsuBft101_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 639122..639625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_16a-0001-cdsEsuBft101_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 635186..635198 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft101_16a-0001 ID=EsuBft101_16a-0001|Name=EsuBft101_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1218bp|location=Sequence derived from alignment at Scaffold_627:635186..639625- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGACGGGGAGGGCGTTTCTCGACGAAACGGCCACAGTTAGCGACGA
TGACGACCCCACCGCCGCCGCTGTCGTGGCGATGAAAAAGGGCGGCTCCA
GCCACCGCCGGAAGAGCGCCGCGCGGTCTTCCGCTAACCCGACAGCTGGT
CGGCTATCGCTGCGCCAGGCGGGGTCAGGGGGCGACCAGCTGTTAGGCCC
GCAACCACCGCGGGAGGGGGGGAACGACGACGATGAGGAGAGTAGCTCCA
ACCCGTCGCTGCTTGAGCGTTCGGAGGTGGACGCCATCCTGTCGGAAGCG
GCCTCGGCGAGCGGTGGCGCCGGTGTCGAAGGCGATGCCAACCTCGACGA
TGCTGCCGCCGTTGCTGCTGGGGTGCGGGAGGGGGGCGGAGAGAGCTACA
AGACGGAGGTTGAGGACGGGCTCAGGGCGCTGATGGGAGAGATCGGCTTC
GGGCAAGAGGAAGTGGCGGCGTACAGCCTGGAAGAGCTGCTGCTGCTGAG
AGAGGAGCTCGAAAAGGAATGGGCGGCTGCGGAAACGGAGGAAGTGTCGC
CTTCCCTCAAGACGGAGAAGCGCGGAGGAGAGCTGAGACGAGCTGGATCC
GCCGAGGAAGAGGAGGAAGAGGAGGAGGAGGAAGGGGAGGAGGAGGATAG
AGATGCGGAGCCCCCTTGGGAGCGCCACTCGCTGTCGCTTCAAGAGAGGC
TGGGCTTGTCGGACGAAGAGGTGGAAAAACTCAGACGATCACCGCGATCA
GGTCTCGCTCTCAGCGGAGGCGTCCTTGATTCCTCCGATTCCAGGGGGGC
CGCGGCGGACGCGTCCCCTGGGTTGGATGCCGGCGGTAGGGGGGGCACCG
CGGATGGCGTGAAGGTATCCCCCGGGTCGGGTGTGGTTGAATACGGTCGC
GAGGCTGCCGCTGCGGCTGCGGCTGCGAGCAGGATGAAGGAGAGGCTGAC
AGGGAGATCGGCGGGAGGCCCGCAGACAGCTGTCGGCTACCTCCTGGGGG
AGCTGCGCATGAGGCCCGAAGAGGTGAAGGATGCGGTGTTGCGGTGGCCA
GCTCTCATGTCGCTCTCCAAGAGGGGCCCCCACGCGGTGACCTCGTGGCT
GCAGGGCGGGCTGGGGCTTAGCACGGACGACGTCGGTAAGATGATCAGGA
AGAACCCGGCCATCGTGGCCTGCAGCATCGTGCACAACCTGCGGCCGAAG
CTCCGGCCTTGGTCTTAG
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protein sequence of EsuBft101_16a-0001

>EsuBft101_16 ID=EsuBft101_16|Name=EsuBft101_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=405bp
MLTGRAFLDETATVSDDDDPTAAAVVAMKKGGSSHRRKSAARSSANPTAG
RLSLRQAGSGGDQLLGPQPPREGGNDDDEESSSNPSLLERSEVDAILSEA
ASASGGAGVEGDANLDDAAAVAAGVREGGGESYKTEVEDGLRALMGEIGF
GQEEVAAYSLEELLLLREELEKEWAAAETEEVSPSLKTEKRGGELRRAGS
AEEEEEEEEEEGEEEDRDAEPPWERHSLSLQERLGLSDEEVEKLRRSPRS
GLALSGGVLDSSDSRGAAADASPGLDAGGRGGTADGVKVSPGSGVVEYGR
EAAAAAAAASRMKERLTGRSAGGPQTAVGYLLGELRMRPEEVKDAVLRWP
ALMSLSKRGPHAVTSWLQGGLGLSTDDVGKMIRKNPAIVACSIVHNLRPK
LRPWS
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mRNA from alignment at Scaffold_627:635186..639625-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft101_16a-0001 ID=EsuBft101_16a-0001|Name=EsuBft101_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4440bp|location=Sequence derived from alignment at Scaffold_627:635186..639625- (Ectocarpus subulatus male Bft15b)
ATGTTGACGGGGAGGGCGTTTCTCGACGAAACGGCCACAGTTAGCGACGA
TGACGACCCCACCGCCGCCGCTGTCGTGGCGATGAAAAAGGGCGGCTCCA
GCCACCGCCGGAAGAGCGCCGCGCGGTCTTCCGCTAACCCGACAGCTGGT
CGGCTATCGCTGCGCCAGGCGGGGTCAGGGGGCGACCAGCTGTTAGGCCC
GCAACCACCGCGGGAGGGGGGGAACGACGACGATGAGGAGAGTAGCTCCA
ACCCGTCGCTGCTTGAGCGTTCGGAGGTGGACGCCATCCTGTCGGAAGCG
GCCTCGGCGAGCGGTGGCGCCGGTGTCGAAGGCGATGCCAACCTCGACGA
TGCTGCCGCCGTTGCTGCTGGGGTGCGGGAGGGGGGCGGAGAGAGCTACA
AGACGGAGGTTGAGGACGGGCTCAGGGCGCTGATGGGAGAGATCGGCTTC
GGGCAAGAGGAAGTGGCGGCGTACAGCCTGGAAGAGCTGCTGCTGCTGAG
AGAGGTCAGAACGAGCGGGCAAGCATGTTTCGAGATTGAGTTACTTCTGT
GTGTGCAACCTTTGCACCGATCTTAATCCAAACGTTGTCCCGTTATCTGG
GGCAGGAGAAAGATATATTGTAAGATTCATGCACAAGTCATGAGCGATAG
ACCAGGCGTCCTGCGTGCTGGTCGCATCTACAGGGCACAGGGTTGACCAG
ATATTGCATGTGCCCCCTCGTGGTCTGGTAGATTCGCCTTTTGCGCTCAA
GTTCATGTCGGGGACACTAAGATTCGACTAGTAATAGGAAGTCTTGGGGA
AACATGATCGATTGCCCCGCCCTTGCCGTGCAGGGCGTAGGCTGAATTGG
TGTGCGGGTAGTACACCATGCCACCATGGACTCCCGCCCTGCGAGTTGCA
CGGCTGTGCACCAGCCCGGCACCAGCCTTCCTTTTGGCCTTCACTTTTCG
CAATGTCCGACTGCATCGGCCAGTTTCTAGATATCGCTGTCGAGACTCAC
GAAGGTAGCACAGGTAGTTGCAGTTGGCGATGGAAACCCATCGCCACTTT
CACCCGAGCTGTCGGCAGATGCCTGTACAAAGTAGGCCACTTACCCCCCG
GGCAAGAGCCAGCCCAGAAAACAGTTGACGGTTTTCTCCAATGCCAGGAA
GGCCCCGCCTGGTATCTTCATCGCATCTGCTATGTTGCCAACACGTAGAC
ACGAACAAGAAAATTAAACACCACGAAAGGACAGCAAGTGTGTGCAACAA
CAGTCAGTCCCAACCGCTTGCGAGTCTCGAACAAAAAGCGTTTGCGCTGT
TTTTTATTATCATTTTCTTGTCTTGCCGGTGCAGGAGCTCGAAAAGGAAT
GGGCGGCTGCGGAAACGGAGGAAGTGTCGCCTTCCCTCAAGACGGAGAAG
CGCGGAGGAGAGCTGAGACGAGCTGGATCCGCCGTAAGTGCACGAATGAT
GGGTTCTTCGTGTGAGAAAGCGGCACATGGGCTGCGGGGGTAGCGGGGGG
ATTCCGGTGTTGGAGACGATTGAGGGGACCTCTTGGTGTTGTTACTCAAT
GGTTGGGCGGACTTTGATTGGTTTCTTCTCGGGCACACTTTCCCAGAGGG
AACGAACATGTTCCCACAATGAACTGCTTTCGTTCCGCGCACGCCCGTCC
GCGCTCGTGTTCCCCATTTCCCTCCCCTTCTGCTATCAGTTCAAAGCGGA
CATTGCGTGCTCTCCCGCCAAGGCTCTGATGCTCGAGCACACGCCATACA
CGCAGAGCCGCTCTCCGGCACACGAGGCTCGCCGCATGCTCGCTGACTCG
CCTTGCTGGATTCCCCGCTCATGGCCGAAAAGAACATGCCTTCTTTCGTC
CGAGGGTGAGGTATTCCACATGGTCAAGCGCAGCTGCTCAGCTAATGGCA
CATGCGGCGAACCTCTAGCAAGAGAGCGGCATTTACTGCGCGTGCTGCGT
GTGTGTGTAGAATGTGCTGGAGCGTCTGAGCCTTGGCAGCGAGCAGAGCG
CGCAATGCCCGCTTTGAAATAGTTGCAGCAGGGGGGAGGGACATGGGAAC
ACGAACGTCGATGGGCGCGAGCAGAACGAAAACAGATCATGTGGGAACGC
GTCACTTGGTTGGGGGACAGGGGTGGGGGGCGTACCGAAACAGGCGGAGA
GATGGCACCCTTCCCAGACAGACTTGTACAGGTCGGTTCGATTGCTCCAC
GACCGAGGGGGGGGGGGGTTCGGAAAGAACCCGATAATTCTACGGAAGGC
CGTCGACGACATGTGTAGATGATTCCAAGACCACCATTGTTGGTTGTTGG
CACAATCTCGGTTAGGGAGCAATCGGGGTTTGAAAATTGGTCTTGAGGGG
GTGCAATCTCTCCGCCTCTTACGGTAGCGGGGAGGGTGCCGGTGTGGAGA
CGATGGAGGAGACCTCTCGGTGTTATGAAATTGATAGATGGATTTGGTTG
CTCTTCTTTTTTTTTCCCTGCGGGAACGAACGAATGCACATGCTTTTGTA
TAACCAGACTCTACCCCTCCCTTGCCCACTCTCGCNTCAGGCTAGTGTGT
CATAAGGCAGACTATGCATAACCGTCATGTTGCCACTCACCCCCCCCCCC
CCCCCCGATATTATCGTTCCCCCTTTAATTGGCCGTGGGTCTCCTGTTCC
CGACCTTCCTGCTCTCTCCCCTACCTCCCCCTCGACTTCGGTCATCACAA
CTCACATCGCAGCAGGAGGAAGAGGAGGAAGAGGAGGAGGAGGAAGGGGA
GGAGGAGGATAGAGATGCGGAGCCCCCTTGGGAGCGCCACTCGCTGTCGC
TTCAAGAGAGGCTGGGCTTGTCGGACGAAGAGGTGGAAAAACTCAGACGA
TCACCGCGATCAGGTCTCGCTCTCAGCGGAGGCGTCCTTGATTCCTCCGA
TTCCAGGGGGGCCGCGGCGGACGCGTCCCCTGGGTTGGATGCCGGCGGTA
GGGGGGGCACCGCGGATGGCGTGAAGGTATCCCCCGGGTCGGGTGTGGTT
GAATACGGTCGCGAGGCTGCCGCTGCGGCTGCGGCTGCGAGCAGGATGAA
GGAGAGGCTGACAGGGAGATCGGCGGGAGGCCCGCAGACAGCTGTCGGCT
ACCTCCTGGGGGAGCTGCGCATGAGGCCCGAAGAGGTGACGGTAGTCTGA
TGGATGTGGTGGTAGGAGGGCGCGCCGCGCTTGTAGGAGGGCGCGCCGCG
CTTCCTTGCTAGTGCTATGGTTTATGTAGATGAAGGTCCTCGCCTGCGAG
CAGTTTGTGCTTCTCTTTCGGCATCCATGCGACACAGCTGCCAATATGTT
CCTTGTAACATCTCGAGCTCGAATCGCCCTTGTCCTCGAAAAGAAGGAGG
ACTAGGGAGCGGCTTTTGCTGGGGAGGGCGCGTTGTCTACCCGGCCGTAC
CTTGGCATTGGAGGGATCCAGAGCGACAAGAGCAAATATCCACGTTTCCA
TGCACTGCTGTACACGTTCGAGAAGGAAAATCCCATTGGGCGTCTGACGC
AAGAGAATAAACCGAACGGAAGTCTTGAAAAGGGTTTTCAATTCGAGTTC
ACAGGAACCCCAGGATCAGAATGATGCAGTTGTACTGCTGGTGGCTGTGA
GCGCCTATGTCGCTGTCGTTTCCGATGCGAGGATGTAGGACAGTCAGTGC
ACGACCGCCCTCCGTTGCTTCGTCAACCACCCCCCTCAGCGGCAGCAGAT
CCGTGCTTCAGCAAGAACGGGGACACCGGCCATACCGTGATCGAAACAAG
CTTGTGCGAGAACATGGACAGCACTGAAACACGCTCACTCATTCACGCAC
GCATAGCAACGTATCCCCCTGCAAGTCCAACCGACGCCTATTCATTGGTT
GGCCAATTGGCACTGTCGATGGTATATTACTTAAAAGAAGCACTCCACAC
TCGTTTTGAGTGATATGAGCGAGAGCCGTTTGTTTTTTTGTTCCTCATTT
TTTATCAGTGGTCACACCGTTGATGCCATGTAGGAGCTCCAATCCGTGGT
CCGTCACACAGAAGGGTTCCTCTCTCTGAGGCCCCCCATTATTCCTTCCC
GCGGTGCTTGCCTTCGATATATCACGTGAGAAGAGTGCAGCACTCTCTTC
GCTCAAAGCGTACAAACGAACTAGTAGCGCTTTCAACTCCTGAAAAAAAA
AACTTTCTTCCTCCCCTCCCCTCCCCTCAGGTGAAGGATGCGGTGTTGCG
GTGGCCAGCTCTCATGTCGCTCTCCAAGAGGGGCCCCCACGCGGTGACCT
CGTGGCTGCAGGGCGGGCTGGGGCTTAGCACGGACGACGTCGGTAAGATG
ATCAGGAAGAACCCGGCCATCGTGGCCTGCAGCATCGTGCACAACCTGCG
GCCGAAGCTCCGGTGCGTGTGTCGTGGTGTCAGGGGCTTCCATCGCAGAG
ATTGGCGTTTTTTTGTTCTTGTCGCAGGCCTTGGTCTTAG
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Coding sequence (CDS) from alignment at Scaffold_627:635186..639625-

>EsuBft101_16a-0001 ID=EsuBft101_16a-0001|Name=EsuBft101_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1218bp|location=Sequence derived from alignment at Scaffold_627:635186..639625- (Ectocarpus subulatus male Bft15b)
ATGTTGACGGGGAGGGCGTTTCTCGACGAAACGGCCACAGTTAGCGACGA
TGACGACCCCACCGCCGCCGCTGTCGTGGCGATGAAAAAGGGCGGCTCCA
GCCACCGCCGGAAGAGCGCCGCGCGGTCTTCCGCTAACCCGACAGCTGGT
CGGCTATCGCTGCGCCAGGCGGGGTCAGGGGGCGACCAGCTGTTAGGCCC
GCAACCACCGCGGGAGGGGGGGAACGACGACGATGAGGAGAGTAGCTCCA
ACCCGTCGCTGCTTGAGCGTTCGGAGGTGGACGCCATCCTGTCGGAAGCG
GCCTCGGCGAGCGGTGGCGCCGGTGTCGAAGGCGATGCCAACCTCGACGA
TGCTGCCGCCGTTGCTGCTGGGGTGCGGGAGGGGGGCGGAGAGAGCTACA
AGACGGAGGTTGAGGACGGGCTCAGGGCGCTGATGGGAGAGATCGGCTTC
GGGCAAGAGGAAGTGGCGGCGTACAGCCTGGAAGAGCTGCTGCTGCTGAG
AGAGGAGCTCGAAAAGGAATGGGCGGCTGCGGAAACGGAGGAAGTGTCGC
CTTCCCTCAAGACGGAGAAGCGCGGAGGAGAGCTGAGACGAGCTGGATCC
GCCGAGGAAGAGGAGGAAGAGGAGGAGGAGGAAGGGGAGGAGGAGGATAG
AGATGCGGAGCCCCCTTGGGAGCGCCACTCGCTGTCGCTTCAAGAGAGGC
TGGGCTTGTCGGACGAAGAGGTGGAAAAACTCAGACGATCACCGCGATCA
GGTCTCGCTCTCAGCGGAGGCGTCCTTGATTCCTCCGATTCCAGGGGGGC
CGCGGCGGACGCGTCCCCTGGGTTGGATGCCGGCGGTAGGGGGGGCACCG
CGGATGGCGTGAAGGTATCCCCCGGGTCGGGTGTGGTTGAATACGGTCGC
GAGGCTGCCGCTGCGGCTGCGGCTGCGAGCAGGATGAAGGAGAGGCTGAC
AGGGAGATCGGCGGGAGGCCCGCAGACAGCTGTCGGCTACCTCCTGGGGG
AGCTGCGCATGAGGCCCGAAGAGGTGAAGGATGCGGTGTTGCGGTGGCCA
GCTCTCATGTCGCTCTCCAAGAGGGGCCCCCACGCGGTGACCTCGTGGCT
GCAGGGCGGGCTGGGGCTTAGCACGGACGACGTCGGTAAGATGATCAGGA
AGAACCCGGCCATCGTGGCCTGCAGCATCGTGCACAACCTGCGGCCGAAG
CTCCGGCCTTGGTCTTAG
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