EsuBft92_30a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft92_30a-0001
Unique NameEsuBft92_30a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_621contigScaffold_621:278066..278809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft92_30
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length24
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft92_30aEsuBft92_30aEctocarpus subulatus male Bft15bgeneScaffold_621 278066..278809 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_30a-0001-exonEsuBft92_30a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_621 278066..278203 -
EsuBft92_30a-0001-exonagat-exon-40007Ectocarpus subulatus male Bft15bexonScaffold_621 278702..278809 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_30a-0001-exonagat-three_prime_utr-23171Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_621 278066..278200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_30a-0001-cdsEsuBft92_30a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_621 278201..278203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_30a-0001EsuBft92_30Ectocarpus subulatus male Bft15bpolypeptideScaffold_621 278201..278809 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft92_30a-0001 ID=EsuBft92_30a-0001|Name=EsuBft92_30a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=246bp|location=Sequence derived from alignment at Scaffold_621:278066..278809- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTACCATGGTGTTTTTGTACAGACAGCACTTCAGACAGCAGTATGC
TGTAGTCGGCAATCTTCCGTTTTGGTATAGAGTGGGACAGGGAGGGGGTG
ATGCTACTTAGTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGCA
CACATACGGTGCTGCACGGATTTTTAGGTGTAGTCTACTTCTTCGGGCTC
TTGGATACCTTTTTCTCGTTATATTTGTGCGTGTTCTTTAGATCCT
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protein sequence of EsuBft92_30a-0001

>EsuBft92_30 ID=EsuBft92_30|Name=EsuBft92_30a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=36bp
MPTMVFLYRQHFRQQYAVVGNLPFWYRVGQGGGDAT
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mRNA from alignment at Scaffold_621:278066..278809-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft92_30a-0001 ID=EsuBft92_30a-0001|Name=EsuBft92_30a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=744bp|location=Sequence derived from alignment at Scaffold_621:278066..278809- (Ectocarpus subulatus male Bft15b)
ATGCCTACCATGGTGTTTTTGTACAGACAGCACTTCAGACAGCAGTATGC
TGTAGTCGGCAATCTTCCGTTTTGGTATAGAGTGGGACAGGGAGGGGGTG
ATGCTACTGTAAACATATTCGCACGATTGAGAGCANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGCTTCAATTTGCGCCGCTTTTTGGAAGAGCCCGTCCCCTGC
TTCCCGAGAAGGGACGGGAGGCGTCTGGACCCGAATTTCGATTTTTTTTG
GTTCTCGCTCTCAATCGGAAACTTCGCTCTCAATCGTGCGAAAACCCTGT
CTGTAGTAGTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGCACA
CATACGGTGCTGCACGGATTTTTAGGTGTAGTCTACTTCTTCGGGCTCTT
GGATACCTTTTTCTCGTTATATTTGTGCGTGTTCTTTAGATCCT
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Coding sequence (CDS) from alignment at Scaffold_621:278066..278809-

>EsuBft92_30a-0001 ID=EsuBft92_30a-0001|Name=EsuBft92_30a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=111bp|location=Sequence derived from alignment at Scaffold_621:278066..278809- (Ectocarpus subulatus male Bft15b)
ATGCCTACCATGGTGTTTTTGTACAGACAGCACTTCAGACAGCAGTATGC
TGTAGTCGGCAATCTTCCGTTTTGGTATAGAGTGGGACAGGGAGGGGGTG
ATGCTACTTAG
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