EsuBft92_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft92_6a-0001
Unique NameEsuBft92_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_621contigScaffold_621:71123..74362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4792.ETI53028
ProteomeIdEsuBft92_6
Protein domainsIPR027806
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Notenuclease harbi1 os:mus musculus gn:harbi1 pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl4776|Peronosporales
Length2242
Hectar predicted targeting categoryother localisation
Evalue1.17e-43
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptionnuclease activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft92_6aEsuBft92_6aEctocarpus subulatus male Bft15bgeneScaffold_621 71123..74362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_6a-0001EsuBft92_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_621 71991..74236 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_6a-0001-exonagat-exon-39899Ectocarpus subulatus male Bft15bexonScaffold_621 71123..72335 -
EsuBft92_6a-0001-exonEsuBft92_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_621 72842..73111 -
EsuBft92_6a-0001-exonagat-exon-39898Ectocarpus subulatus male Bft15bexonScaffold_621 73604..74362 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_6a-0001-exonagat-three_prime_utr-23177Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_621 71123..71990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_6a-0001-cdsEsuBft92_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_621 71991..72335 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_6a-0001-exonagat-five_prime_utr-15072Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_621 74237..74362 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft92_6a-0001 ID=EsuBft92_6a-0001|Name=EsuBft92_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2242bp|location=Sequence derived from alignment at Scaffold_621:71123..74362- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCCAGCCTCGTCTTGCAGCGCGTTGCCGCTACCAAACCACCACCACA
GCGGTCCTCCACGGCACGTGTCAAGTTGAGCCACCTGCCATGGCTGTCAG
TCCAACCAGAAGGGCCAAGCGTGCCCATGGGCTGGCCTCCTTCACGAAGA
GGGTGTCGAGCCTGTTGGATGCACTGGCCATTTTGGACAACCTCGCAGCG
CTCGATGCTCCGTCGAAGAGGAGCCGCAGCACCCTGGTCGCGCGAGAGAG
GCGGCCTTTCGAGACCTACATCAAGCCGATGCTGCAAGACCACACGTTCT
CGATGCGCTTTCGCATGGAGTACGATGACTTCAGGGTTGGTTCTAGTAGA
TCACCTGCGACCTGCCCTGCAGAAGAACCAGCAGATGGGGCTGCTGCGCA
ACGGCGCCATCCCGGTGGAGGACCAGGTCGCGATGACGTTGCGATGGCTC
GCGGGGGGGTCCATCTACGAGTGCATGGACGGCCATGTCATCGCGAGGAG
TACGGCATACCACGTAACGTCGACCGTGATCAACGCCCTGAATGCCTGTC
CGGAGTTGAACTGCAAGTGGCCAGAGGGTGAAGATGCTGCCAGAGCCGCC
GAGCTTTTCCGCAACCGCAGCTCTATGGATGTCGTCCGGAAGTGCGTGGG
AGCAACGGATGGCTTGTTTGTCCGGATGATCAAGCCGAGCGCGAAGGAGG
TCGCAGAGCCCAACTTGTATTACAACGGGCACAAGAAAGGCTTCGGCATG
AACTTCCAGGCGGTATGCGACGCCCAGTATCGCATCATGGCCTGGATGAT
GAATTGCCCAGGCAGCCAAAACGACCGCACCGCGTTCAACTTTTCGGGGT
TCGACAAGCTCTTGGCGGGCTTGCCCGAAGGCCACTTTGTCGTGGGCGAC
GCCGCCTATGGGGCGTCCGAGCGCGTCGTCGTCCCGTTCCCGGGGACGAG
CCTCTCCGCAAGCCAAGACGCGTGCAACTACTACGTGTCTCAGTGCCGGA
TGGCAATCGAGCAGACCTACGGCATTCTGGTCAGGAGATGGGGCATCCTC
TGGCGCCCCATGGAGGTTCGCATCGAGAAGTTCGAGCACGTGGTGAACGC
CGTCGTTCGCCTGCACAACTTCTGTCGGGATCGAAAGGTGGACGTCCCCA
CGGAGAACACGGGGTCTGCGATTCCTCCGCCCGAGGTCGCTTTTGACGAC
GACGGCCTCATCAGCAGCGACTACTTCGAGACCGTTCCAGTGCGTACCGG
GCGCCCGGTGAAGGACCAGGCTAAGGCGTCGAAGCCGAGGGAGGCCATCC
GCAAGGAGCTGGAGGTGGCCGGCTTGATGAGGCCAGAGCACAACATCGCC
AGGAGCCACAAACGCGCAAGTTAGAGTGCTGTCGGAACCTTAAACTTGGC
AGAGAGGGAGGGGAGGTCGAGGGCGAGAGCGGGAGTGGGGGGCAAGAGCG
GGGTCGGAACCGGCGGCCGACGTGGGGTGTGTGTATCGCGGGGATCGGGG
TGAGGGTCATGTGCGGTGGTGTCTGTGTGTTGTGTTGTGTTTTGTTGTGT
TGTGCATGTGTGTTTTTCCCCGTGGTTTGAAGGCGGCATTGTTTGGTGGG
CGTTTGTTCGTCTTGCGTTTCTTTTTTTTTCTACGTGCTGGGTTAGGATC
CGACTAACACGTCCTCCCGCCATCGAAGGTGTTTTTTGTCGAAGCGGTCT
ACCTCGTATTCGCGGCCCATTATTGTAGTGTCTTTGGGCGTTCGACGTGG
GACTACCTAGCTGTCACCGTACACTGTTTCCTCGCCAAGGTTCGCTTCTG
ATTGAAACTGCCTTTTGGGAAGTATACGTGATTGTGGAACTGTGGATCGG
GGCCAACGTGCCGTTGAATTAGCTGGCGCTTGTTTTATTGAGGATGATGT
TGCCTAAGAGAGACCGTTTGAGGACGACCGTAACAGCACTATTGGTGATT
TACGAGCGTGAGCGACAAGCTCTAAAGCTCTCCCGGAGGGGGGTTCGGTC
CTCGCGCACGCCCCCATGTGGTTGCATCTGTGTAACCACGCCACTCCTGC
CCTTGCCCTGGTGCATTCCTCGCACAGCAGTAGTAGGCGATCAGAGTCGG
CTTAGACAACGGTACAAGCAATCCCACGGAAAAAGCTGCTTCCCCAACAA
ACCGGGCAACCTCCAACAGAGCCGCACTGTCCCACTTCCATGCTATTCTC
GGACATCAAATATCTCCGGTGTCTGTAAAAAAAAACACACAC
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protein sequence of EsuBft92_6a-0001

>EsuBft92_6 ID=EsuBft92_6|Name=EsuBft92_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=415bp
MGWPPSRRGCRACWMHWPFWTTSQRSMLRRRGAAAPWSRERGGLSRPTSS
RCCKTTRSRCAFAWSTMTSGLVLVDHLRPALQKNQQMGLLRNGAIPVEDQ
VAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE
GEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYN
GHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLP
EGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGI
LVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIP
PPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGL
MRPEHNIARSHKRAS
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mRNA from alignment at Scaffold_621:71123..74362-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft92_6a-0001 ID=EsuBft92_6a-0001|Name=EsuBft92_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3240bp|location=Sequence derived from alignment at Scaffold_621:71123..74362- (Ectocarpus subulatus male Bft15b)
CCCCCCAGCCTCGTCTTGCAGCGCGTTGCCGCTACCAAACCACCACCACA
GCGGTCCTCCACGGCACGTGTCAAGTTGAGCCACCTGCCATGGCTGTCAG
TCCAACCAGAAGGGCCAAGCGTGCCCATGGGCTGGCCTCCTTCACGAAGA
GGGTGTCGAGCCTGTTGGATGCACTGGCCATTTTGGACAACCTCGCAGCG
CTCGATGCTCCGTCGAAGAGGAGCCGCAGCACCCTGGTCGCGCGAGAGAG
GCGGCCTTTCGAGACCTACATCAAGCCGATGCTGCAAGACCACACGTTCT
CGATGCGCTTTCGCATGGAGTACGATGACTTCAGGGTTGGTTCTAGTAGA
TCACCTGCGACCTGCCCTGCAGAAGAACCAGCAGATGGGGCTGCTGCGCA
ACGGCGCCATCCCGGTGGAGGACCAGGTCGCGATGACGTTGCGATGGCTC
GCGGGGGGGTCCATCTACGAGTGCATGGACGGCCATGTCATCGCGAGGAG
TACGGCATACCACGTAACGTCGACCGTGATCAACGCCCTGAATGCCTGTC
CGGAGTTGAACTGCAAGTGGCCAGAGGGTGAAGATGCTGCCAGAGCCGCC
GAGCTTTTCCGCAACCGCAGCTCTATGGATGTCGTCCGGAAGTGCGTGGG
AGCAACGGATGGCTTGTTTGTCCGGATGATCAAGCCGAGCGCGAAGGAGG
TCGCAGAGCCCAACTTGTATTACAACGGGCACAAGAAAGGCTTCGGCATG
AACTTCCAGGTGTGTATGTGCATACATGTGTAGATTGTTTCCTTGGTCGG
CGGCCTATCCTGATGCCAGGTGCGTTTTGCCTGCAAAGCAGCGACGGACC
TACATATGCTGCGGGGGTAGAACATCGGTTCAGTACAGCAGTAGTATTCA
TACATTCCTCCGGGTGCGGTTGTGCACGATACAAGCTCAAACGAAGTGTA
TTTTTCCACTCCCCAACGCACAGGATTCATCCATCAAAGGGTGCGCACTT
TGTAGGTAGCAGTGTTGTTGAGGCGCGTCATGGGCGCATATTTTTGTGCG
CAGGCTGGAATGGGCCTTAGTGCTACTTTACTACTGCTGTGATGTAAAAT
TTGTGGAGGCGCGTGCATGCCGTTCTCCGAACTGAGCGGGCATGTGGACG
TGGCGTCCTCCTTCGATGGTTCTCTTCGAAAAAAATCGCCTTTGGTTGAG
TGTTATTTCACGTACATACATGCTCATGCACACGTTGTCCTTCTACTTCA
GGCGGTATGCGACGCCCAGTATCGCATCATGGCCTGGATGATGAATTGCC
CAGGCAGCCAAAACGACCGCACCGCGTTCAACTTTTCGGGGTTCGACAAG
CTCTTGGCGGGCTTGCCCGAAGGCCACTTTGTCGTGGGCGACGCCGCCTA
TGGGGCGTCCGAGCGCGTCGTCGTCCCGTTCCCGGGGACGAGCCTCTCCG
CAAGCCAAGACGCGTGCAACTACTACGTGTCTCAGTGCCGGATGGCAATC
GAGCAGACCTACGGCATTCTGGTGAGCGTTGTGGGCATGGCAAAAGTTGT
AGTTGAGTCCGCGCATGCAATTGGGTGAGTTGGCGTCCTGATGTTAGAGG
CAACTCGTGGTAAAGATCCTCGCGATGGGGGAGTGCGTGATGTCTGGTGT
GATGTTGTCACAGAGCGCGGCGCATCCGTGCCACCATCTTTTCATTTTGA
TGTGGGCAATGCATATTCATGTTTGAAGGGAGCAACCGGGGAAGTGCATA
TGGACCCTACAGCAGTACTACATGTAGCGTCTTTTTTGTTATACCCCTTG
TGTGCATATTGTTTTGTGTTCGACCCTCCTTCCTTCGCGCGGCGATAGAC
GGCTAGGGAGAGACTGAAATCAGGTAGGACAGGTGCACACGTGCATTGCT
GCTGGGATAGTTGAACCGGGAGGGTGGGACAAGGAGGCAGGCCGCCTGAA
TTTTGGATTTGGGCTCTGAGTTTGCCATGATGGTACGTTTTTCCCCTTTG
GTCTTGGTTTGCAATGACGGCCTACAGGTCAGGAGATGGGGCATCCTCTG
GCGCCCCATGGAGGTTCGCATCGAGAAGTTCGAGCACGTGGTGAACGCCG
TCGTTCGCCTGCACAACTTCTGTCGGGATCGAAAGGTGGACGTCCCCACG
GAGAACACGGGGTCTGCGATTCCTCCGCCCGAGGTCGCTTTTGACGACGA
CGGCCTCATCAGCAGCGACTACTTCGAGACCGTTCCAGTGCGTACCGGGC
GCCCGGTGAAGGACCAGGCTAAGGCGTCGAAGCCGAGGGAGGCCATCCGC
AAGGAGCTGGAGGTGGCCGGCTTGATGAGGCCAGAGCACAACATCGCCAG
GAGCCACAAACGCGCAAGTTAGAGTGCTGTCGGAACCTTAAACTTGGCAG
AGAGGGAGGGGAGGTCGAGGGCGAGAGCGGGAGTGGGGGGCAAGAGCGGG
GTCGGAACCGGCGGCCGACGTGGGGTGTGTGTATCGCGGGGATCGGGGTG
AGGGTCATGTGCGGTGGTGTCTGTGTGTTGTGTTGTGTTTTGTTGTGTTG
TGCATGTGTGTTTTTCCCCGTGGTTTGAAGGCGGCATTGTTTGGTGGGCG
TTTGTTCGTCTTGCGTTTCTTTTTTTTTCTACGTGCTGGGTTAGGATCCG
ACTAACACGTCCTCCCGCCATCGAAGGTGTTTTTTGTCGAAGCGGTCTAC
CTCGTATTCGCGGCCCATTATTGTAGTGTCTTTGGGCGTTCGACGTGGGA
CTACCTAGCTGTCACCGTACACTGTTTCCTCGCCAAGGTTCGCTTCTGAT
TGAAACTGCCTTTTGGGAAGTATACGTGATTGTGGAACTGTGGATCGGGG
CCAACGTGCCGTTGAATTAGCTGGCGCTTGTTTTATTGAGGATGATGTTG
CCTAAGAGAGACCGTTTGAGGACGACCGTAACAGCACTATTGGTGATTTA
CGAGCGTGAGCGACAAGCTCTAAAGCTCTCCCGGAGGGGGGTTCGGTCCT
CGCGCACGCCCCCATGTGGTTGCATCTGTGTAACCACGCCACTCCTGCCC
TTGCCCTGGTGCATTCCTCGCACAGCAGTAGTAGGCGATCAGAGTCGGCT
TAGACAACGGTACAAGCAATCCCACGGAAAAAGCTGCTTCCCCAACAAAC
CGGGCAACCTCCAACAGAGCCGCACTGTCCCACTTCCATGCTATTCTCGG
ACATCAAATATCTCCGGTGTCTGTAAAAAAAAACACACAC
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Coding sequence (CDS) from alignment at Scaffold_621:71123..74362-

>EsuBft92_6a-0001 ID=EsuBft92_6a-0001|Name=EsuBft92_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1248bp|location=Sequence derived from alignment at Scaffold_621:71123..74362- (Ectocarpus subulatus male Bft15b)
ATGGGCTGGCCTCCTTCACGAAGAGGGTGTCGAGCCTGTTGGATGCACTG
GCCATTTTGGACAACCTCGCAGCGCTCGATGCTCCGTCGAAGAGGAGCCG
CAGCACCCTGGTCGCGCGAGAGAGGCGGCCTTTCGAGACCTACATCAAGC
CGATGCTGCAAGACCACACGTTCTCGATGCGCTTTCGCATGGAGTACGAT
GACTTCAGGGTTGGTTCTAGTAGATCACCTGCGACCTGCCCTGCAGAAGA
ACCAGCAGATGGGGCTGCTGCGCAACGGCGCCATCCCGGTGGAGGACCAG
GTCGCGATGACGTTGCGATGGCTCGCGGGGGGGTCCATCTACGAGTGCAT
GGACGGCCATGTCATCGCGAGGAGTACGGCATACCACGTAACGTCGACCG
TGATCAACGCCCTGAATGCCTGTCCGGAGTTGAACTGCAAGTGGCCAGAG
GGTGAAGATGCTGCCAGAGCCGCCGAGCTTTTCCGCAACCGCAGCTCTAT
GGATGTCGTCCGGAAGTGCGTGGGAGCAACGGATGGCTTGTTTGTCCGGA
TGATCAAGCCGAGCGCGAAGGAGGTCGCAGAGCCCAACTTGTATTACAAC
GGGCACAAGAAAGGCTTCGGCATGAACTTCCAGGCGGTATGCGACGCCCA
GTATCGCATCATGGCCTGGATGATGAATTGCCCAGGCAGCCAAAACGACC
GCACCGCGTTCAACTTTTCGGGGTTCGACAAGCTCTTGGCGGGCTTGCCC
GAAGGCCACTTTGTCGTGGGCGACGCCGCCTATGGGGCGTCCGAGCGCGT
CGTCGTCCCGTTCCCGGGGACGAGCCTCTCCGCAAGCCAAGACGCGTGCA
ACTACTACGTGTCTCAGTGCCGGATGGCAATCGAGCAGACCTACGGCATT
CTGGTCAGGAGATGGGGCATCCTCTGGCGCCCCATGGAGGTTCGCATCGA
GAAGTTCGAGCACGTGGTGAACGCCGTCGTTCGCCTGCACAACTTCTGTC
GGGATCGAAAGGTGGACGTCCCCACGGAGAACACGGGGTCTGCGATTCCT
CCGCCCGAGGTCGCTTTTGACGACGACGGCCTCATCAGCAGCGACTACTT
CGAGACCGTTCCAGTGCGTACCGGGCGCCCGGTGAAGGACCAGGCTAAGG
CGTCGAAGCCGAGGGAGGCCATCCGCAAGGAGCTGGAGGTGGCCGGCTTG
ATGAGGCCAGAGCACAACATCGCCAGGAGCCACAAACGCGCAAGTTAG
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