EsuBft92_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft92_4a-0001
Unique Name	EsuBft92_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_621	contig	Scaffold_621:60720..64201 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft92_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	6
Length	180
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft92_4a	EsuBft92_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_621 60720..64201 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_4a-0001	EsuBft92_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_621 60720..64201 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_4a-0001-exon	agat-exon-39896	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 60720..61210 -
EsuBft92_4a-0001-exon	agat-exon-39892	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 61568..61579 -
EsuBft92_4a-0001-exon	agat-exon-39895	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 62223..62527 -
EsuBft92_4a-0001-exon	agat-exon-39894	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 62715..63460 -
EsuBft92_4a-0001-exon	EsuBft92_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 63653..63858 -
EsuBft92_4a-0001-exon	agat-exon-39893	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 64162..64201 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_4a-0001-cds	EsuBft92_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_621 60720..61210 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_621:60720..64201-
coding sequence from alignment at Scaffold_621:60720..64201-

spliced messenger RNA

>EsuBft92_4a-0001 ID=EsuBft92_4a-0001|Name=EsuBft92_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1800bp|location=Sequence derived from alignment at Scaffold_621:60720..64201- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACTTCAAACAGCATCAAGTTTGTAGAGAAGGCAAACGAACACGA
AAGTGATACCCACAAGCCGCCTCTTCCGCGCCCTGCTGTCGACGGCGTTT
TGCCTTTCTTGATTTCACGCGTGCAGCAGTCCAGAAAACGTGGTCGCGAC
GACGAGGGCAACGGGATACTGGGCTTCCTCCAGGACTCAGCGCTTATCGA
GGTGGTGGATGACTCCGATCTTGAAGAAGATGTGGCACCCTTGAAATGGG
AAGCCACGATATTCTCTACCTCTCGCATCTCGACCTCTGACACGTCCTTC
GTGGCGGACCTGCCACGAAGGCCGGGTCATGTCGCGGTGAGGAGCGCATC
GAAGAAGGGCAAGGGGGACCTGGTCATGGTCATCACGGAGGCCCACTACC
ACCACGCCGTCGAGTTGTACCTCGGGCCCTACGGTCTCGCGGCGACAGAC
GGCATCGAGAGCGACCCTCACGAAGGTGTCCTTACCGGTCGGAAAGGCCG
ACCCAGCTTTCACTACGCCAGTACCGACGACGCCATCAGGGCCATCCTCG
AGACGAAGCAGCCCTACGTCGACGCGCTGCACAAGTTCCTTGCACTCTCC
AGCTTTCTTCACTGGCAGACTACAGAAAGGCAGGCGAACGTGGACGCCAA
GATGGAGGCCACGTTTACCGAGGCTGAACTCTCCAAGCACTCGTCGCTCT
TCGTCGACAAGAAGGGCAACGCGCTGCCCAAGATCGGAGTCAGGGTGGCG
CACGACATCGGAGGCGGGGCGAACGTAGATTACAGTACTAGAGGATTTGA
GTCGGACCCCAAGAGTTTGTTGACTTTCGGCGGAGGTACTATCGGTGGAG
CGCAAAATGGGGCGCGCAAACTAGTTGCGCTCGACTCGGAGGAAGACTTC
CGACTGAAGACTCCCGGGGTGGCCGCTACCACGGTGGACCACACTACGAT
GTTCCTCCGCCTCAACGATGCGGCGGTGTTTGCCGCCCGAAGTGAAACGT
TGTTCGACAAGGGGTCCTGGCTGAACAAGAACGTGGTCGGACTGGCCTGG
GTACGACGCCGCGGGCTGTCGCTCGTACGGACCAGGGAGGGGACGACACG
TGGCGGGGAGCCCTGGGTGTATCTTGTCACCGTCATCGACAACTGGGAGC
ATTGTTGGTCAGGACCGGGTTTCCTTCTGTTCGTGACGCAACAGGGATGC
TTCTCAGGCTACAAGAACCTCAAGGAGCACGACAAGGAGGGCGCCCGCCA
AATGGAAGTCGGCCGGTCAGGCGACTTCTCGACCCCCGCTGCAAAGGGCA
AGATCGGAGGGGCGAACCAGGTGGGCAGCGCCCCCAGCAACGGTGCGGCA
GCGAAAGTACGCAAGCCCATCCCCGGCCAACGCAACCCCGTGAAAGAGTA
TGGCTTTTGCTTCGGCTTCGGGGCGGATGGCGTTGGCCTCGACCAGAAGC
TGCACGACAAGTTTGCCGGCGAAAACGGGTTTGGGGACGGGCCAATTACG
GAGGGCGGGTGCGAGATCCCAAACTTCAGCGAGGCGGGGGTGACAAAGGG
CGAATCAACGTGGCAGCTCGATGAGCACGACTACCTCATCCTCCCCGTCC
ACAGCGGCAACAAAACTGAGGGTCACCCAGCGTGCACAATCGGCGGTTGT
GTCCCGGTGGAGAAGGTGAACGAGTCATGGCGACTGTGCCACTGGGCGCT
GAAGTACATCCTCAATAGGAGGATCGTGTCCAAGGTGACGCAGAACGCAC
GCCACAACGGCGCTGGCGAAAAGAGCCGCGCCAAGGGGAGGAAGGAGTGA

protein sequence of EsuBft92_4a-0001

>EsuBft92_4 ID=EsuBft92_4|Name=EsuBft92_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=599bp
MTTSNSIKFVEKANEHESDTHKPPLPRPAVDGVLPFLISRVQQSRKRGRD
DEGNGILGFLQDSALIEVVDDSDLEEDVAPLKWEATIFSTSRISTSDTSF
VADLPRRPGHVAVRSASKKGKGDLVMVITEAHYHHAVELYLGPYGLAATD
GIESDPHEGVLTGRKGRPSFHYASTDDAIRAILETKQPYVDALHKFLALS
SFLHWQTTERQANVDAKMEATFTEAELSKHSSLFVDKKGNALPKIGVRVA
HDIGGGANVDYSTRGFESDPKSLLTFGGGTIGGAQNGARKLVALDSEEDF
RLKTPGVAATTVDHTTMFLRLNDAAVFAARSETLFDKGSWLNKNVVGLAW
VRRRGLSLVRTREGTTRGGEPWVYLVTVIDNWEHCWSGPGFLLFVTQQGC
FSGYKNLKEHDKEGARQMEVGRSGDFSTPAAKGKIGGANQVGSAPSNGAA
AKVRKPIPGQRNPVKEYGFCFGFGADGVGLDQKLHDKFAGENGFGDGPIT
EGGCEIPNFSEAGVTKGESTWQLDEHDYLILPVHSGNKTEGHPACTIGGC
VPVEKVNESWRLCHWALKYILNRRIVSKVTQNARHNGAGEKSRAKGRKE

mRNA from alignment at Scaffold_621:60720..64201-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft92_4a-0001 ID=EsuBft92_4a-0001|Name=EsuBft92_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3482bp|location=Sequence derived from alignment at Scaffold_621:60720..64201- (Ectocarpus subulatus male Bft15b)
ATGACCACTTCAAACAGCATCAAGTTTGTAGAGAAGGCAAGTATGTACTT
ATATGTGTTGCCTTACATGGTCGATGAATGTCGTACACGCCACCGAGGCC
GTGTGTCACCCACCTGCTTGTGTGCGTTTCCCTCTGTGCCATGTTTCAGA
TTCAAGGCTTTCTACAGCAAGTTCATTCGTCAAATTAGTTCCTCCTGGGA
TTTCGAATTTAGGAGATGGTTGTGTCGTGTACCATGCTCCCAATTCCTGT
CTTTTGCGGTGAAGATGGCAAACACAAATACACCACGTTCTACGCTCGCT
GAAAAGAGGGAGTAAATTGAGACAACCAACCGTAAAGATGCAGACGAACA
CGAAAGTGATACCCACAAGCCGCCTCTTCCGCGCCCTGCTGTCGACGGCG
TTTTGCCTTTCTTGATTTCACGCGTGCAGCAGTCCAGAAAACGTGGTCGC
GACGACGAGGGCAACGGGATACTGGGCTTCCTCCAGGACTCAGCGCTTAT
CGAGGTGGTGGATGACTCCGATCTTGAAGAAGATGTGGCACCCTTGAAAG
TGAGTGAATTGAAAGGGATGATCTGCCCCCCCGCCCCCACCGGCGACGCC
GATGATAACTGTTTTCGCTCGACGGCTCTACCAAGATATTGTGTGGCGAA
TTAATGCATTGACCAGCAAGATATATCAGCATTGTGCATCGTTTTGGATA
ACATCACCGCTTCCCCTCCTTCGTTTTCCGACGTGCCGCAGTGGGAAGCC
ACGATATTCTCTACCTCTCGCATCTCGACCTCTGACACGTCCTTCGTGGC
GGACCTGCCACGAAGGCCGGGTCATGTCGCGGTGAGGAGCGCATCGAAGA
AGGGCAAGGGGGACCTGGTCATGGTCATCACGGAGGCCCACTACCACCAC
GCCGTCGAGTTGTACCTCGGGCCCTACGGTCTCGCGGCGACAGACGGCAT
CGAGAGCGACCCTCACGAAGGTGTCCTTACCGGTCGGAAAGGCCGACCCA
GCTTTCACTACGCCAGTACCGACGACGCCATCAGGGCCATCCTCGAGACG
AAGCAGCCCTACGTCGACGCGCTGCACAAGTTCCTTGCACTCTCCAGCTT
TCTTCACTGGCAGACTACAGAAAGGCAGGCGAACGTGGACGCCAAGATGG
AGGCCACGTTTACCGAGGCTGAACTCTCCAAGCACTCGTCGCTCTTCGTC
GACAAGAAGGGCAACGCGCTGCCCAAGATCGGAGTCAGGGTGGCGCACGA
CATCGGAGGCGGGGCGAACGTAGATTACAGTACTAGAGGATTTGAGTCGG
ACCCCAAGAGTTTGTTGACTTTCGGCGGAGGTACTATCGGTGGAGCGCAA
AATGGGGCGCGCAAACTAGTTGCGCTCGACTCGGAGGAAGACTTCCGACT
GAAGACTCCCGGGGTGGCCGCTACCACGGTGGACCACACTACGATGTTCC
TCCGCCTCAACGATGCGGCGGTGTTTGCCGCCCGAAGGTCAGAAGCCCCT
TGGGTTTTTTCGCTGTGCAAAGAGTGACCTGTCCCCAAATGTATTTAGGA
GGTTTGGTTTAATCCCACTCATGTCGACGCTTGCGTGCAACAGGAACAGC
GGGCACTCCAACCCCCGGTCTAAACTGCTCCGACACTACTTTTTGTTTTA
ATATTCTTTCTTGCGGCGCTTCAGTGAAACGTTGTTCGACAAGGGGTCCT
GGCTGAACAAGAACGTGGTCGGACTGGCCTGGGTACGACGCCGCGGGCTG
TCGCTCGTACGGACCAGGGAGGGGACGACACGTGGCGGGGAGCCCTGGGT
GTATCTTGTCACCGTCATCGACAACTGGGAGCATTGTTGGTCAGGACCGG
GTTTCCTTCTGTTCGTGACGCAACAGGGATGCTTCTCAGGCTACAAGAAC
CTCAAGGAGCACGACAAGGAGGGCGCCCGCCAAATGGAAGTCGGCCGGTC
AGGCGACTTCTCGACCCCCGCTGCAAAGGGTGAGTAGTGTTGTTGTTGTG
GTTGTCTGGTATTATTGTTTGTTGGTGGTGGTGCCGTTGTTGTTGTTCGC
ATTTTGTTGCTGGCGATTGACGACCACTTTCCTCGTGTGCCCCGCACCCC
ATGTACTCAAAGCATCTCCGCCCCGAGCTCAGTAGAATGCGTCGATAGCG
TGGCGTGCGATGGACCATGTTGTTCTTGGGTGTTGCTTCTTTTTTCTCTC
ATCATTCGCTATTACCACAGAGGCATTGTCACGAAAAAGAAAAACACCAC
CTCCTTTTGCGTGCATTGGGGCAGCACTTCGCGTCCAGGTCGATCGCTCG
TGTTTCTTTGATGTGTAGTCACTTTTCGTGTGCCTGCGTTTTGTGTATAT
GATCCCAGGCTTACATGTATATCCATTTATTTCTTCTCGTCGGATGTTAT
CGTCAACGCGTGACAAAAAAACCCTGTCGTTCCCGTTTCGTCCCATGTGA
ATAGCCCCCGTTTTTCGTCCTCTGTTTTCTGGATGCATAATACCTCATTG
AAATCCTCATCATTCGCTATTACCAATGAATTCTCTCGATCCCCTCCCTC
GCGCCTACTTACTCGTTCTTTCGTTTTCCCGACATCACCCATCGTTGTCT
CGACTTGGTGGTGGACGCATAGGCAAGATCGGAGGTACGTCATTCCTTGA
TCGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGTTATTGTTATT
GCGTCGAACGCGCCCACTCAGCTGCTACGAAGGAGTGCGTCCGAAAGTTC
GTGTGCGTTTGAAAATTCCACAGAGGCATTGTCACGAAAAAGAAAAACAC
CACCTCCTTTTGCGTGCATTGGGGCAGCACTTCGCGTCCAGGTCGATCGC
TCGTGTTTCTTTGATGTGTAGTCACTTTTCGTGTGCCTGCGTTTTGTGTA
TATGATCCCAGGCTTACATGTATATCCATTTATTTCTTCTCGTCGGATGT
TATCGTCAACGCGTGACAAAAAGGTGCGGCCTTGGGAACAGGGGCGAACC
AGGTGGGCAGCGCCCCCAGCAACGGTGCGGCAGCGAAAGTACGCAAGCCC
ATCCCCGGCCAACGCAACCCCGTGAAAGAGTATGGCTTTTGCTTCGGCTT
CGGGGCGGATGGCGTTGGCCTCGACCAGAAGCTGCACGACAAGTTTGCCG
GCGAAAACGGGTTTGGGGACGGGCCAATTACGGAGGGCGGGTGCGAGATC
CCAAACTTCAGCGAGGCGGGGGTGACAAAGGGCGAATCAACGTGGCAGCT
CGATGAGCACGACTACCTCATCCTCCCCGTCCACAGCGGCAACAAAACTG
AGGGTCACCCAGCGTGCACAATCGGCGGTTGTGTCCCGGTGGAGAAGGTG
AACGAGTCATGGCGACTGTGCCACTGGGCGCTGAAGTACATCCTCAATAG
GAGGATCGTGTCCAAGGTGACGCAGAACGCACGCCACAACGGCGCTGGCG
AAAAGAGCCGCGCCAAGGGGAGGAAGGAGTGA

Coding sequence (CDS) from alignment at Scaffold_621:60720..64201-

>EsuBft92_4a-0001 ID=EsuBft92_4a-0001|Name=EsuBft92_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1800bp|location=Sequence derived from alignment at Scaffold_621:60720..64201- (Ectocarpus subulatus male Bft15b)
ATGACCACTTCAAACAGCATCAAGTTTGTAGAGAAGGCAAACGAACACGA
AAGTGATACCCACAAGCCGCCTCTTCCGCGCCCTGCTGTCGACGGCGTTT
TGCCTTTCTTGATTTCACGCGTGCAGCAGTCCAGAAAACGTGGTCGCGAC
GACGAGGGCAACGGGATACTGGGCTTCCTCCAGGACTCAGCGCTTATCGA
GGTGGTGGATGACTCCGATCTTGAAGAAGATGTGGCACCCTTGAAATGGG
AAGCCACGATATTCTCTACCTCTCGCATCTCGACCTCTGACACGTCCTTC
GTGGCGGACCTGCCACGAAGGCCGGGTCATGTCGCGGTGAGGAGCGCATC
GAAGAAGGGCAAGGGGGACCTGGTCATGGTCATCACGGAGGCCCACTACC
ACCACGCCGTCGAGTTGTACCTCGGGCCCTACGGTCTCGCGGCGACAGAC
GGCATCGAGAGCGACCCTCACGAAGGTGTCCTTACCGGTCGGAAAGGCCG
ACCCAGCTTTCACTACGCCAGTACCGACGACGCCATCAGGGCCATCCTCG
AGACGAAGCAGCCCTACGTCGACGCGCTGCACAAGTTCCTTGCACTCTCC
AGCTTTCTTCACTGGCAGACTACAGAAAGGCAGGCGAACGTGGACGCCAA
GATGGAGGCCACGTTTACCGAGGCTGAACTCTCCAAGCACTCGTCGCTCT
TCGTCGACAAGAAGGGCAACGCGCTGCCCAAGATCGGAGTCAGGGTGGCG
CACGACATCGGAGGCGGGGCGAACGTAGATTACAGTACTAGAGGATTTGA
GTCGGACCCCAAGAGTTTGTTGACTTTCGGCGGAGGTACTATCGGTGGAG
CGCAAAATGGGGCGCGCAAACTAGTTGCGCTCGACTCGGAGGAAGACTTC
CGACTGAAGACTCCCGGGGTGGCCGCTACCACGGTGGACCACACTACGAT
GTTCCTCCGCCTCAACGATGCGGCGGTGTTTGCCGCCCGAAGTGAAACGT
TGTTCGACAAGGGGTCCTGGCTGAACAAGAACGTGGTCGGACTGGCCTGG
GTACGACGCCGCGGGCTGTCGCTCGTACGGACCAGGGAGGGGACGACACG
TGGCGGGGAGCCCTGGGTGTATCTTGTCACCGTCATCGACAACTGGGAGC
ATTGTTGGTCAGGACCGGGTTTCCTTCTGTTCGTGACGCAACAGGGATGC
TTCTCAGGCTACAAGAACCTCAAGGAGCACGACAAGGAGGGCGCCCGCCA
AATGGAAGTCGGCCGGTCAGGCGACTTCTCGACCCCCGCTGCAAAGGGCA
AGATCGGAGGGGCGAACCAGGTGGGCAGCGCCCCCAGCAACGGTGCGGCA
GCGAAAGTACGCAAGCCCATCCCCGGCCAACGCAACCCCGTGAAAGAGTA
TGGCTTTTGCTTCGGCTTCGGGGCGGATGGCGTTGGCCTCGACCAGAAGC
TGCACGACAAGTTTGCCGGCGAAAACGGGTTTGGGGACGGGCCAATTACG
GAGGGCGGGTGCGAGATCCCAAACTTCAGCGAGGCGGGGGTGACAAAGGG
CGAATCAACGTGGCAGCTCGATGAGCACGACTACCTCATCCTCCCCGTCC
ACAGCGGCAACAAAACTGAGGGTCACCCAGCGTGCACAATCGGCGGTTGT
GTCCCGGTGGAGAAGGTGAACGAGTCATGGCGACTGTGCCACTGGGCGCT
GAAGTACATCCTCAATAGGAGGATCGTGTCCAAGGTGACGCAGAACGCAC
GCCACAACGGCGCTGGCGAAAAGAGCCGCGCCAAGGGGAGGAAGGAGTGA