EsuBft1073_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1073_8a-0001
Unique Name	EsuBft1073_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_61	contig	Scaffold_61:146976..149088 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_018602-tr
ProteomeId	EsuBft1073_8
Protein domains	PTHR24559
Protein domains	IPR012337
Protein domains	IPR001584
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon 412 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	2113
Hectar predicted targeting category	other localisation
Evalue	1.38e-41
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	K02A2.6-like
COG category	E

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_8a	EsuBft1073_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_61 146976..149088 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_8a-0001-exon	EsuBft1073_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_61 146976..149088 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_8a-0001-cds	EsuBft1073_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_61 146976..149069 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_8a-0001-exon	agat-three_prime_utr-696	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_61 149070..149088 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1073_8a-0001	EsuBft1073_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_61 146976..149069 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_61:146976..149088+
coding sequence from alignment at Scaffold_61:146976..149088+

spliced messenger RNA

>EsuBft1073_8a-0001 ID=EsuBft1073_8a-0001|Name=EsuBft1073_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2113bp|location=Sequence derived from alignment at Scaffold_61:146976..149088+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGATTGTATTGGGGATGAGGGTACCATCACTCTTAAACGGATTCA
GAAGTTGGCGGACAAGTGCACACTGGTGACTTTGCCTCGCTCCGCGCCGG
TAGGGGCCAAAGACGCCCACCACGTGCTGCTGATAAAGAAACCGTCCGAA
GCGCCTACATCTCGCGCCCAACGACACAGCGGCGGTAAATTCGAAAGACT
TTTGGGGGATGAACCGGTTCGATTGTATGTTCCTTTTCTTTTGCGGCCGT
GGGCGCTAAATGCGGTGCACACAGAAGGTTGTCATCTAGGAGAGGACGTG
ACGTTGGCCTCCCTCGAGCGTTACTATTTTTGGATTGGCATGAGTGACAG
CGTGCGATGGTTCATCAAACACTGCATCGTGTGCCAAGCCTCGAAAACGG
CTCGCCGAAGACCTAGATGGCCCTTGATTTCGCTTCCCTTACCCTCTCGG
CCGGGGGAAATGGTGGCGTTTGATATTCTTGGCCCTCTGCCGACAACTAA
AAGCGGAAACAAATACGTGTTGCTGGTCGTCGACTTGTTTAGTAGGCATG
CTGAACCCTACGCTCTCTCTGCCGACGAGAAAACCGCTCAAGGGTGTGCC
TCAAAGCTAGCCGACGATTATTGTACACGTTGGGGATGTCCGGTGTATTT
GTTGTCAGATAGAGGTGGCGAGTTTACGGCGGCTGTCGCGCGTGATGTGT
ACCGATTGCTTGGGGCCAAGAAACGGTTTACCAGCTCCTTCCACCCTCAA
TCCAACGGGTGCGTCGAAAGATTGAACCATACGGTCTGCCAGATGTTGTC
TCACGTGATCAGCGCCCAACAAACCGATTGGGACGACCATCTCTTGCCGT
GTGTGTACGCCCACAACAATCACGTGAGCAAGGCTACCGGTCTTGCGCCC
ATGGAAGTACATATTGGCAGGTATCCTCGTTTACCAATGACGGTTCTTGG
GTCACAGAAGGTGGTTTCTGGTATGCAGTCGAAAAAACGGGATGATCTAG
AATACCTCCAGCTCATGAAAGACCGGCAAGCGAAAGCCTACGAGCTTGTG
GTTGAAAGAGACAGGCTCACGAAAGAAAAACACCGAGCACGCAACGAAGA
TCTAGACAACCTAATTACGAAGCGGCCGATTTTCCACGCGGGCGCGTGGG
TGTGGTGCTACGATCCACAGCACACCCTCCGTACGGCGAATAACGATCAA
ACAGCTTCTGCCAAGAGGATTAAAGCGAAACTCGCTAACCTGTGGACAGG
ACCGTTTAAAGTGCTTGCTGTAGGGCCCTGTCGCTTTAACGACATGGAAG
TTGGGTCCAAGTTGCTGTATCTGGATTTACCGCACGACACACAGGCCAAA
TCCAACCGTGTCTCAGTGTTGCGGTGTAAGCGTTGCCATCGGGCGGACGA
ACCCGAGGAAATCCCCGACTTTTTACCTTGGAAAATTTGTTCGTACGTTC
TGCATAAATTTGCGGACATGGCGCCTCCCTTCTACCTCACCGCGGATGAC
GTGGAAATCGAGCTTGACGTACAGCGTGCACAGCCGACCGCTATCACCGG
TCACCGTATCAGTAGAGGTCCAGGTGGTTCCATCGCGGTACAATACGAAA
CGCGTTGGCGCGGACACCGCCAACCCACTTGGGAATCTGAAGCAAACATC
CAGCAATATGGTGACTTTGTCGTCAAGTATTGGGTGGGCAGTGCAGTGCG
TCAAGTAGGAGCCGACAATAAAGTGCACCGTGACTATAATAAGCTTGCCG
CGCACCGCGCGCAAGCTCGCTCCCGTGATTCCCTTTATGTGCCTCCAGGG
TACGCGTTGCTGGCGACGTGGGAGCGTGGGCCGGCCTTGCTGTCAGCAGA
GATGAAAGGAGCGCATGTTTACGTGCGGACGAAGCAGGAGGGCTGGCAGC
TGGGAGTGGTACATCAGGTTTCGAGGGCGCGGGAGGAGGACCTGCCGTAC
AACGTCAATTTCGTCGACCTCGAGCGGCGTTTCAACGTGTCGTTGTCGCC
GACGAAATATTGTACGGCGGTGGATGGTCCGCCTGGGTCGTGGTGCTTTC
TTGTGCACATGCGGTCCGGGAGCGTCCGGCGGAACGGAACCTGAGGGGTG
CGCTGTGGACGAG

protein sequence of EsuBft1073_8a-0001

>EsuBft1073_8 ID=EsuBft1073_8|Name=EsuBft1073_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=697bp
MSDCIGDEGTITLKRIQKLADKCTLVTLPRSAPVGAKDAHHVLLIKKPSE
APTSRAQRHSGGKFERLLGDEPVRLYVPFLLRPWALNAVHTEGCHLGEDV
TLASLERYYFWIGMSDSVRWFIKHCIVCQASKTARRRPRWPLISLPLPSR
PGEMVAFDILGPLPTTKSGNKYVLLVVDLFSRHAEPYALSADEKTAQGCA
SKLADDYCTRWGCPVYLLSDRGGEFTAAVARDVYRLLGAKKRFTSSFHPQ
SNGCVERLNHTVCQMLSHVISAQQTDWDDHLLPCVYAHNNHVSKATGLAP
MEVHIGRYPRLPMTVLGSQKVVSGMQSKKRDDLEYLQLMKDRQAKAYELV
VERDRLTKEKHRARNEDLDNLITKRPIFHAGAWVWCYDPQHTLRTANNDQ
TASAKRIKAKLANLWTGPFKVLAVGPCRFNDMEVGSKLLYLDLPHDTQAK
SNRVSVLRCKRCHRADEPEEIPDFLPWKICSYVLHKFADMAPPFYLTADD
VEIELDVQRAQPTAITGHRISRGPGGSIAVQYETRWRGHRQPTWESEANI
QQYGDFVVKYWVGSAVRQVGADNKVHRDYNKLAAHRAQARSRDSLYVPPG
YALLATWERGPALLSAEMKGAHVYVRTKQEGWQLGVVHQVSRAREEDLPY
NVNFVDLERRFNVSLSPTKYCTAVDGPPGSWCFLVHMRSGSVRRNGT

mRNA from alignment at Scaffold_61:146976..149088+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1073_8a-0001 ID=EsuBft1073_8a-0001|Name=EsuBft1073_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2113bp|location=Sequence derived from alignment at Scaffold_61:146976..149088+ (Ectocarpus subulatus male Bft15b)
ATGAGCGATTGTATTGGGGATGAGGGTACCATCACTCTTAAACGGATTCA
GAAGTTGGCGGACAAGTGCACACTGGTGACTTTGCCTCGCTCCGCGCCGG
TAGGGGCCAAAGACGCCCACCACGTGCTGCTGATAAAGAAACCGTCCGAA
GCGCCTACATCTCGCGCCCAACGACACAGCGGCGGTAAATTCGAAAGACT
TTTGGGGGATGAACCGGTTCGATTGTATGTTCCTTTTCTTTTGCGGCCGT
GGGCGCTAAATGCGGTGCACACAGAAGGTTGTCATCTAGGAGAGGACGTG
ACGTTGGCCTCCCTCGAGCGTTACTATTTTTGGATTGGCATGAGTGACAG
CGTGCGATGGTTCATCAAACACTGCATCGTGTGCCAAGCCTCGAAAACGG
CTCGCCGAAGACCTAGATGGCCCTTGATTTCGCTTCCCTTACCCTCTCGG
CCGGGGGAAATGGTGGCGTTTGATATTCTTGGCCCTCTGCCGACAACTAA
AAGCGGAAACAAATACGTGTTGCTGGTCGTCGACTTGTTTAGTAGGCATG
CTGAACCCTACGCTCTCTCTGCCGACGAGAAAACCGCTCAAGGGTGTGCC
TCAAAGCTAGCCGACGATTATTGTACACGTTGGGGATGTCCGGTGTATTT
GTTGTCAGATAGAGGTGGCGAGTTTACGGCGGCTGTCGCGCGTGATGTGT
ACCGATTGCTTGGGGCCAAGAAACGGTTTACCAGCTCCTTCCACCCTCAA
TCCAACGGGTGCGTCGAAAGATTGAACCATACGGTCTGCCAGATGTTGTC
TCACGTGATCAGCGCCCAACAAACCGATTGGGACGACCATCTCTTGCCGT
GTGTGTACGCCCACAACAATCACGTGAGCAAGGCTACCGGTCTTGCGCCC
ATGGAAGTACATATTGGCAGGTATCCTCGTTTACCAATGACGGTTCTTGG
GTCACAGAAGGTGGTTTCTGGTATGCAGTCGAAAAAACGGGATGATCTAG
AATACCTCCAGCTCATGAAAGACCGGCAAGCGAAAGCCTACGAGCTTGTG
GTTGAAAGAGACAGGCTCACGAAAGAAAAACACCGAGCACGCAACGAAGA
TCTAGACAACCTAATTACGAAGCGGCCGATTTTCCACGCGGGCGCGTGGG
TGTGGTGCTACGATCCACAGCACACCCTCCGTACGGCGAATAACGATCAA
ACAGCTTCTGCCAAGAGGATTAAAGCGAAACTCGCTAACCTGTGGACAGG
ACCGTTTAAAGTGCTTGCTGTAGGGCCCTGTCGCTTTAACGACATGGAAG
TTGGGTCCAAGTTGCTGTATCTGGATTTACCGCACGACACACAGGCCAAA
TCCAACCGTGTCTCAGTGTTGCGGTGTAAGCGTTGCCATCGGGCGGACGA
ACCCGAGGAAATCCCCGACTTTTTACCTTGGAAAATTTGTTCGTACGTTC
TGCATAAATTTGCGGACATGGCGCCTCCCTTCTACCTCACCGCGGATGAC
GTGGAAATCGAGCTTGACGTACAGCGTGCACAGCCGACCGCTATCACCGG
TCACCGTATCAGTAGAGGTCCAGGTGGTTCCATCGCGGTACAATACGAAA
CGCGTTGGCGCGGACACCGCCAACCCACTTGGGAATCTGAAGCAAACATC
CAGCAATATGGTGACTTTGTCGTCAAGTATTGGGTGGGCAGTGCAGTGCG
TCAAGTAGGAGCCGACAATAAAGTGCACCGTGACTATAATAAGCTTGCCG
CGCACCGCGCGCAAGCTCGCTCCCGTGATTCCCTTTATGTGCCTCCAGGG
TACGCGTTGCTGGCGACGTGGGAGCGTGGGCCGGCCTTGCTGTCAGCAGA
GATGAAAGGAGCGCATGTTTACGTGCGGACGAAGCAGGAGGGCTGGCAGC
TGGGAGTGGTACATCAGGTTTCGAGGGCGCGGGAGGAGGACCTGCCGTAC
AACGTCAATTTCGTCGACCTCGAGCGGCGTTTCAACGTGTCGTTGTCGCC
GACGAAATATTGTACGGCGGTGGATGGTCCGCCTGGGTCGTGGTGCTTTC
TTGTGCACATGCGGTCCGGGAGCGTCCGGCGGAACGGAACCTGAGGGGTG
CGCTGTGGACGAG

Coding sequence (CDS) from alignment at Scaffold_61:146976..149088+

>EsuBft1073_8a-0001 ID=EsuBft1073_8a-0001|Name=EsuBft1073_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2094bp|location=Sequence derived from alignment at Scaffold_61:146976..149088+ (Ectocarpus subulatus male Bft15b)
ATGAGCGATTGTATTGGGGATGAGGGTACCATCACTCTTAAACGGATTCA
GAAGTTGGCGGACAAGTGCACACTGGTGACTTTGCCTCGCTCCGCGCCGG
TAGGGGCCAAAGACGCCCACCACGTGCTGCTGATAAAGAAACCGTCCGAA
GCGCCTACATCTCGCGCCCAACGACACAGCGGCGGTAAATTCGAAAGACT
TTTGGGGGATGAACCGGTTCGATTGTATGTTCCTTTTCTTTTGCGGCCGT
GGGCGCTAAATGCGGTGCACACAGAAGGTTGTCATCTAGGAGAGGACGTG
ACGTTGGCCTCCCTCGAGCGTTACTATTTTTGGATTGGCATGAGTGACAG
CGTGCGATGGTTCATCAAACACTGCATCGTGTGCCAAGCCTCGAAAACGG
CTCGCCGAAGACCTAGATGGCCCTTGATTTCGCTTCCCTTACCCTCTCGG
CCGGGGGAAATGGTGGCGTTTGATATTCTTGGCCCTCTGCCGACAACTAA
AAGCGGAAACAAATACGTGTTGCTGGTCGTCGACTTGTTTAGTAGGCATG
CTGAACCCTACGCTCTCTCTGCCGACGAGAAAACCGCTCAAGGGTGTGCC
TCAAAGCTAGCCGACGATTATTGTACACGTTGGGGATGTCCGGTGTATTT
GTTGTCAGATAGAGGTGGCGAGTTTACGGCGGCTGTCGCGCGTGATGTGT
ACCGATTGCTTGGGGCCAAGAAACGGTTTACCAGCTCCTTCCACCCTCAA
TCCAACGGGTGCGTCGAAAGATTGAACCATACGGTCTGCCAGATGTTGTC
TCACGTGATCAGCGCCCAACAAACCGATTGGGACGACCATCTCTTGCCGT
GTGTGTACGCCCACAACAATCACGTGAGCAAGGCTACCGGTCTTGCGCCC
ATGGAAGTACATATTGGCAGGTATCCTCGTTTACCAATGACGGTTCTTGG
GTCACAGAAGGTGGTTTCTGGTATGCAGTCGAAAAAACGGGATGATCTAG
AATACCTCCAGCTCATGAAAGACCGGCAAGCGAAAGCCTACGAGCTTGTG
GTTGAAAGAGACAGGCTCACGAAAGAAAAACACCGAGCACGCAACGAAGA
TCTAGACAACCTAATTACGAAGCGGCCGATTTTCCACGCGGGCGCGTGGG
TGTGGTGCTACGATCCACAGCACACCCTCCGTACGGCGAATAACGATCAA
ACAGCTTCTGCCAAGAGGATTAAAGCGAAACTCGCTAACCTGTGGACAGG
ACCGTTTAAAGTGCTTGCTGTAGGGCCCTGTCGCTTTAACGACATGGAAG
TTGGGTCCAAGTTGCTGTATCTGGATTTACCGCACGACACACAGGCCAAA
TCCAACCGTGTCTCAGTGTTGCGGTGTAAGCGTTGCCATCGGGCGGACGA
ACCCGAGGAAATCCCCGACTTTTTACCTTGGAAAATTTGTTCGTACGTTC
TGCATAAATTTGCGGACATGGCGCCTCCCTTCTACCTCACCGCGGATGAC
GTGGAAATCGAGCTTGACGTACAGCGTGCACAGCCGACCGCTATCACCGG
TCACCGTATCAGTAGAGGTCCAGGTGGTTCCATCGCGGTACAATACGAAA
CGCGTTGGCGCGGACACCGCCAACCCACTTGGGAATCTGAAGCAAACATC
CAGCAATATGGTGACTTTGTCGTCAAGTATTGGGTGGGCAGTGCAGTGCG
TCAAGTAGGAGCCGACAATAAAGTGCACCGTGACTATAATAAGCTTGCCG
CGCACCGCGCGCAAGCTCGCTCCCGTGATTCCCTTTATGTGCCTCCAGGG
TACGCGTTGCTGGCGACGTGGGAGCGTGGGCCGGCCTTGCTGTCAGCAGA
GATGAAAGGAGCGCATGTTTACGTGCGGACGAAGCAGGAGGGCTGGCAGC
TGGGAGTGGTACATCAGGTTTCGAGGGCGCGGGAGGAGGACCTGCCGTAC
AACGTCAATTTCGTCGACCTCGAGCGGCGTTTCAACGTGTCGTTGTCGCC
GACGAAATATTGTACGGCGGTGGATGGTCCGCCTGGGTCGTGGTGCTTTC
TTGTGCACATGCGGTCCGGGAGCGTCCGGCGGAACGGAACCTGA