EsuBft1055_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1055_10a-0001
Unique NameEsuBft1055_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_61contigScaffold_61:84825..88080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra96629
ProteomeIdEsuBft1055_10
Protein domainsIPR006773
Ownerapollo_admin@sb-roscoff.fr
Noteproteasomal ubiquitin receptor adrm1-b os:xenopus laevis gn:adrm1-b pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl4776|Peronosporales
Length680
Hectar predicted targeting categoryother localisation
Evalue1.14e-13
EggNOG OGsKOG3037@1|root,KOG3037@2759|Eukaryota,3QE4W@4776|Peronosporales
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K06691
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
DescriptionProteasome complex subunit Rpn13 ubiquitin receptor
COG categoryS
BRITEko00000,ko00001,ko00002,ko03051
Cross References
External references for this mRNA
DatabaseAccession
GO0055085
GO0006368
GO0005737
GO0000502
GO0010950
GO0061133
GO0002020
GO0043248
GO0005730
GO0070628
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_10aEsuBft1055_10aEctocarpus subulatus male Bft15bgeneScaffold_61 84825..88080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_10a-0001EsuBft1055_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_61 84853..87899 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_10a-0001-exonEsuBft1055_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_61 84825..84894 +
EsuBft1055_10a-0001-exonagat-exon-8654Ectocarpus subulatus male Bft15bexonScaffold_61 86010..86144 +
EsuBft1055_10a-0001-exonagat-exon-8656Ectocarpus subulatus male Bft15bexonScaffold_61 86671..86724 +
EsuBft1055_10a-0001-exonagat-exon-8655Ectocarpus subulatus male Bft15bexonScaffold_61 87317..87421 +
EsuBft1055_10a-0001-exonagat-exon-8653Ectocarpus subulatus male Bft15bexonScaffold_61 87765..88080 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_10a-0001-exonagat-five_prime_utr-326Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_61 84825..84852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_10a-0001-cdsEsuBft1055_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_61 84853..84894 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_10a-0001-exonagat-three_prime_utr-531Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_61 87900..88080 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1055_10a-0001 ID=EsuBft1055_10a-0001|Name=EsuBft1055_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=680bp|location=Sequence derived from alignment at Scaffold_61:84825..88080+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGACGGCCGCAGACTTTCAGCGAGCCATGATGAACATTGCGGGCTTGG
CACCGCAGCGGCGACAACCGGCCCTCTCTTTGAGGGATGCGGTGGACGCG
AACGCTATCGAAGCCTCGGGTTTCCTCGATGACCCGGAGGTGCAGGAGGC
GCTCTTGCCGCTCTTGCCCGAGAGAAACCAGACGGCGGAGGAGCTACGAG
AAACCATCCGAAGCCCCCAGCTTCAGCAGTCGCTTTCATCGCTCTCTCGC
GCCCTAAGGTCCGACAACTTCAACAACATCATGTCGAGCTTCGAGCTGAA
CCCTAGCAATCCTCGCAGCGCAGAAGCGATGGCGAGGGGCGATGGCGTCG
AAGCCTTCGTCCAGGCTCTGGCGCACTCTGCGACACAAAGGCGGGAGAGG
GAGGCCGCCGAGGCGGCGGCTCAGGAGGGGGCGGAAGGGGAAGGCGAAGG
AGGTGGTGCGGGAGCAGAGGGGGGAAATGACCCAAGAACGGAGGGATAGA
CAGACACAAGAAGAGAAAGAAACGAAGATGCCTTACCTAAGTGAGATTTC
AAGCTGATTGGGCAGTAATACTGTAGCATAAGAGAAAGCCCCATGGAGCA
AGTTACTTGGAAGAATCGCTCCGTTGTTTCTCTACCCGACAAAGCGAAAT
CGCATGGCACCCTTACGGTGGTGTTACATC
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protein sequence of EsuBft1055_10a-0001

>EsuBft1055_10 ID=EsuBft1055_10|Name=EsuBft1055_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MMNIAGLAPQRRQPALSLRDAVDANAIEASGFLDDPEVQEALLPLLPERN
QTAEELRETIRSPQLQQSLSSLSRALRSDNFNNIMSSFELNPSNPRSAEA
MARGDGVEAFVQALAHSATQRREREAAEAAAQEGAEGEGEGGGAGAEGGN
DPRTEG
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mRNA from alignment at Scaffold_61:84825..88080+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1055_10a-0001 ID=EsuBft1055_10a-0001|Name=EsuBft1055_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3256bp|location=Sequence derived from alignment at Scaffold_61:84825..88080+ (Ectocarpus subulatus male Bft15b)
GTTGACGGCCGCAGACTTTCAGCGAGCCATGATGAACATTGCGGGCTTGG
CACCGCAGCGGCGACAACCGGTGAGACAGTTGACCCCCCCCCCCCGNNNN
NNNNNNNNNNNNNNNNNNNAGACAGTTGACCCCCCCCCCCGGAACCTCCA
CCGTAGCTATCCTGGGCAGCTGAAAAGGCGGGAAGTTATACAGATAGGAT
ACGGGACACGGAGGAACGATTGGCCATCGGTGACCGGTCCAATGCTCCGT
CCTCTCGAGAAGGCGTGGCCAGTGGCCTAACAACCAAGGCATGCACAACA
TAAGTACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGGGGGGGGGGGGGGGAGTCGGCCAATCATTGTGAATGACTTATG
TACCCATTTGTTCGGTGCGGATGTATATCTTCTCGCACATACGGAAATCC
GTGTCCATCGCGAATTGCGTTGTTGCCACGGCTTGCTGCGCCGTCCATCC
CTGTGGCCTAGTTGAGGATGGAACGGTTGTTCTGTAGGTGGCGAGCATTA
TGGTACTCTCAGCGCAGCGAATCGTTCCGGCATGGAGTGCGTCGAAATAG
GCTCAACTCTACATCACCACGTAACATTCCTTGTTGCGTTGTCGACTGTT
GGTCTAGCGTTGTTATTGTTGTTTTTTTTTCTCCCATCGTTGGACTCTGT
CTTCTGCCCCTCTGGCCCCTATCCTCCACTTCTACTAGCTAGACGACCCA
ACCGGGGTCACACAGGAGGGGGGGGGTTGGACCCCCTCCCGCGGTTCCTG
CCTGAGATATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCTCGTGT
ATGCATGTGACTGTTGTCGGCCCATTTGTTGTGGACGCCAGTCTTGCTGT
ATTTGGCGCACCAACCGGGGTCCATCTCTCAAGGCGACTTCTCCAACGGA
AAACTCTCTATCCTCATCCCAACTTGCAGACGTTGGTTCAATATCGCTCA
CAACCACGGTCGCTTCATTTCAACCCAAGAACTTCTCGTACACTAACGGC
CTCGTTGGTCTATTATCGCTCGCAATCACGATCTCTTTGGTTGCGTGCTT
GGCGGGAAAACACAACATTTTTTTGGCGGGGGAAGGCCCTCTCTTTGAGG
GATGCGGTGGACGCGAACGCTATCGAAGCCTCGGGTTTCCTCGATGACCC
GGAGGTGCAGGAGGCGCTCTTGCCGCTCTTGCCCGAGAGAAACCAGACGG
CGGAGGAGCTACGAGAAACCGTGAGTGTCGTTGCCATGCTCTTTCAGAGT
ACGCCCTTGCGGCGGAGCACGTGGTGGTGGCGCGGTGAATGTTACTGCGC
GATACTGGAGCTGTAAACCAAGATGTGCAGGCGTTTTGCTGTTTTTGGTT
AAGTGGAGATCTGCCAACTTCACACCGCGTCCTTGATGGATGAGGTCGTT
TCGCAATATCCTGTGTTGGGCCCGCCTCACCTCTTCTCTCTCGCTTTGCT
TGATCTCTCTCTCTCCGACTTGGCTGCCGCATGCTAGGGATCCTCTCTGA
ACCCGACATATGGAATGCCAAACCCGAAGCATGGAATATAACTTCGAACC
ACAACGGTTCGTTGTGGAACGTTCGGCGTAGTCTTTCGCAAGATGCAGCA
GAGGGAGCAACAGACCATGATTTTTCGAACTTTTCGAATGACTTGGCCTC
ATGTCCTTGCGCGCCCTGTCGTCGTGGCTCTCGCGTGCTGTGGTACGACG
TTCTGACGCCTTACGTGGTGAACTCTGCGACGAATCTACTCATTAGATCC
GAAGCCCCCAGCTTCAGCAGTCGCTTTCATCGCTCTCTCGCGCCCTAAGG
GTAAGTGGGGTTCCAGGGCTGCAGTAATCTCAGTGTTCGGCTACATGGCT
GCATGTGTGTCCTTTCTTCCCCAATCACTACGTTGATTGTCGTTTCCTCC
TCCCAACCATTGTCGTGATCGTCGTTTCCTCCTCGTTTTTTGTAGTTGGG
GTGTGGGGTGTGAGGCGGGCACTGGGGTTGTTGTCTTCACCTTGAAAGTC
CTTCCGGCCTACGTAGTGGCCTCGTTACCCTCTCCTTCTATTTAGAAGTA
GCAGATGGGAGTTCGATTCTCTCTTTGGAGAGATTTTCTCCAGCAATTTG
TGGTGGGAAAATGATCCATTCGAGAATACACACGCCTCGACTTCACGTTC
GACGAGTGAAAGGGATGGCTGCCCACTCCTTCCACTATCGATATCGTTCC
ACCACAATTATTCGCGGGTTTTCCTTCCACGGTATTTTTTCATGCAGATG
ATGAACCGTACGCATGTCGCTGAATTCGTTATTAGCATAGGCAGCCCTCG
TTGTCGCTGGTTTTTGTCGGCAAACAGCGCCAAACGCTCGTTGATGGTGT
GTGCCCCCCACGCGCGATGCCCCACGGCTCTTGCCTGGTCAGTCCGACAA
CTTCAACAACATCATGTCGAGCTTCGAGCTGAACCCTAGCAATCCTCGCA
GCGCAGAAGCGATGGCGAGGGGCGATGGCGTCGAAGCCTTCGTCCAGGTG
ATTAGCTAGTCAAGTTGGTTCCGCGAATAGTGCGAGCATCGTTCTCGCGG
GTAACTGTGCAATGTGCGCGTGCTGTTGTGAGGCATGCTCTGAGCATCGG
TTGATTTACATCTGCTTGGTACCGCCGTACACTCTTTGTACACGACGACT
TCCGTTGCGTGCTTGGCGTTTTGCACAACGTGGAGTTGTGATGCAAATCG
GGAGTGATTTCCACCGCCAACGACGCGCGGCACCTCCAAGGCGCACAACG
GCAGCAGCGTGGTCGTTCGTTAAAGCTGAATTTGTTGCCTTTGCTAGTGC
GCACAACTTACCTTGACGTTTGCTTGTTTCATCTGAACAGGCTCTGGCGC
ACTCTGCGACACAAAGGCGGGAGAGGGAGGCCGCCGAGGCGGCGGCTCAG
GAGGGGGCGGAAGGGGAAGGCGAAGGAGGTGGTGCGGGAGCAGAGGGGGG
AAATGACCCAAGAACGGAGGGATAGACAGACACAAGAAGAGAAAGAAACG
AAGATGCCTTACCTAAGTGAGATTTCAAGCTGATTGGGCAGTAATACTGT
AGCATAAGAGAAAGCCCCATGGAGCAAGTTACTTGGAAGAATCGCTCCGT
TGTTTCTCTACCCGACAAAGCGAAATCGCATGGCACCCTTACGGTGGTGT
TACATC
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Coding sequence (CDS) from alignment at Scaffold_61:84825..88080+

>EsuBft1055_10a-0001 ID=EsuBft1055_10a-0001|Name=EsuBft1055_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_61:84825..88080+ (Ectocarpus subulatus male Bft15b)
ATGATGAACATTGCGGGCTTGGCACCGCAGCGGCGACAACCGGCCCTCTC
TTTGAGGGATGCGGTGGACGCGAACGCTATCGAAGCCTCGGGTTTCCTCG
ATGACCCGGAGGTGCAGGAGGCGCTCTTGCCGCTCTTGCCCGAGAGAAAC
CAGACGGCGGAGGAGCTACGAGAAACCATCCGAAGCCCCCAGCTTCAGCA
GTCGCTTTCATCGCTCTCTCGCGCCCTAAGGTCCGACAACTTCAACAACA
TCATGTCGAGCTTCGAGCTGAACCCTAGCAATCCTCGCAGCGCAGAAGCG
ATGGCGAGGGGCGATGGCGTCGAAGCCTTCGTCCAGGCTCTGGCGCACTC
TGCGACACAAAGGCGGGAGAGGGAGGCCGCCGAGGCGGCGGCTCAGGAGG
GGGCGGAAGGGGAAGGCGAAGGAGGTGGTGCGGGAGCAGAGGGGGGAAAT
GACCCAAGAACGGAGGGATAG
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