EsuBft329_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft329_13a-0001
Unique NameEsuBft329_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:154640..160531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft329_13
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length201
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft329_13aEsuBft329_13aEctocarpus subulatus male Bft15bgeneScaffold_604 154640..160531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_13a-0001EsuBft329_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 160187..160531 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_13a-0001-exonEsuBft329_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 154640..155262 -
EsuBft329_13a-0001-exonagat-exon-87656Ectocarpus subulatus male Bft15bexonScaffold_604 156712..157127 -
EsuBft329_13a-0001-exonagat-exon-87655Ectocarpus subulatus male Bft15bexonScaffold_604 159559..160531 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_13a-0001-exonagat-three_prime_utr-12899Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 154640..155262 -
EsuBft329_13a-0001-exonagat-three_prime_utr-12900Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 156712..157127 -
EsuBft329_13a-0001-exonagat-three_prime_utr-12901Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 159559..160186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_13a-0001-cdsEsuBft329_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 160187..160531 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft329_13a-0001 ID=EsuBft329_13a-0001|Name=EsuBft329_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2012bp|location=Sequence derived from alignment at Scaffold_604:154640..160531- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACGAGCAGCCGTCCAGCGATTCGGATGAACTGCCCGCTCCGAA
GGGGAAGCCGCGAGATCGGAAGGCGAGGGAGAAGGTAAAACTTGCGATGT
ACAAGATTGTGAACAACGACGCCGGGAATCCCGTGGATATGTTGATTGCT
GCCAGCGATCGCGTTGATGACTTGGAAGAGAAGTTGGAAAATGCGAAAGA
AGCAGAAGCAAAAATTACAAGGATCACTCAAAACCTCTCAGTAGCGCGGG
AGGCGTACGAAAAAATCTACAAAAAGACCAGGCCTGCTGCAGAGAAAGCG
GCGGAGGAAGAGGAGGAAGAAGAGGAAGAGAGTGAGGTTTCGTAGCGATA
TCTCGTGAAGGCCCTTCGGACGAACCAAACCTGACTTCTTCCAACGACGC
ATGAAGAGGATGTCTTGTCGTTTCGGATTTGATTCACACGGCATAGGTTG
GGTACATGCATTTTTTTGAGTATGGCTAGTTTTTTTTCCGTTGTGTGCAT
CACGAAGGTAGGGCACTGCTCGTATGTTCTTTGAGTGTGGACGGCGCATG
GCGTGATCCACCCCTCCAGCATGTCTTTCTTCTTTCGGTTTCGGCGGGGG
AACATTAGAAGTTTGTTGTTCAGTGAGGGACCAGGGTCTTCTCTGTCGGG
CGTTTATGTGCAGGCGTACGCATTTTTGGCTGCCGGAGAGCTGAGCCCAG
AGACCAGAGACATTGGTTCGGAGGGTATTTCATTTTTGTCACTTAGCTTC
GAAAATATGATATGGGATTTGAATGTGTAGGAAAGTACAAACAGTAGTGC
GGGCTAGTAAGCCCGGAGGAAAGTGCGGGAGATGCAACTCCCCACGGAAG
GAAAAAACAGGGGACAGGATCTAGTAGCCCCTGCTTGAGCAGCTGATGCT
GGCCCTATCCTTGACAGAGTCCTTTACCTTCCCTTGGCAACAGCTACTGC
TGTTCCACACGAGTTAATAACAAGACGCCGCTGATGCGGCCAACGGGTCT
CGGCCCGACCTCCACGATGTGGTGAGCTGCCTCCTCGTGGCGATGCGGGC
GGCCACCATGAACGCCACGTCTCCGGTGGTGTGGCCCGGCTGCGCCGTGG
CGACTCCGGCATCTCCGGCGTTCCAGCAGCCCAAGGCCGGCCGCGTCAAG
GCCACGCCGGTCGAGCCCATCGTGCGAGAGAGTAGCTCAGGCGAGGACTC
GGGCTGGAGTTCCGCGGGAGCCTCTCGCCCCCCCCGGAGCCATCTTCATT
GGCGGGCAATGGCCGGGCACGGCAGTAGGCCAAGCGTCACACGAGCTGGA
CTCGTGGCAAGGGAGGCGGATCGGGCTCTGGTTCAGACCGGAGTCTCACC
CGGAAGCACGGCGCTCCGAAGGGTCCTTCTCCCAGGCAACAAGTGAAACG
GAGCTTGGATGGAGGAGCCCCTGGACCAGACGCTTTCCAGCTATTGTCGC
GTCACCTGGCGGAGCAATTTGACGTCGGAGACCGCCAATAGTCGTTTTTG
CGGCTGCAACAATTTGGCGTAGCAGATGGTACTCCTTTTGCGGATTATCT
TCGGGCTTTCCGTTTGTTAGTTTCGTCTGTGACTGGCTCTGAGCGTACTT
TGGCCCCTAGTGTATCCATGGTTCTCGAAATAGTGCGAAGCTCGGTCGAC
AAGCAATTTCCGAGTCTGTCTCCGCTTTTGTACCCGGGTGTTTTGTCCAC
TGCGGTCACTCCCTTTGAGTCGATTGCGGTAATGTGGGAGGCGTTCGCGC
CTTTGGCGACTAGTAAAACCCCGGCTATCTGTGGTTCAACTTATTTTCGT
TGACCTCGACCCGTGACTCTCTGCAGCCTCGGCGGCCTAACCACCGCGCC
CCTGCGTCTTCGGGCCAGTGGGCATCCGGCTTCGCACAGAACCCTGTAGT
TTTGCCCGTGCAACCTCAAGCCACGGATCCTTTCACGCACAACTACGACT
CGCGGCCTGCTTCGCAAGCCGACTGGTCTGATGTATACGCCCTCACCGCC
AATTTTCGTAAC
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protein sequence of EsuBft329_13a-0001

>EsuBft329_13 ID=EsuBft329_13|Name=EsuBft329_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=114bp
MEDEQPSSDSDELPAPKGKPRDRKAREKVKLAMYKIVNNDAGNPVDMLIA
ASDRVDDLEEKLENAKEAEAKITRITQNLSVAREAYEKIYKKTRPAAEKA
AEEEEEEEEESEVS
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mRNA from alignment at Scaffold_604:154640..160531-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft329_13a-0001 ID=EsuBft329_13a-0001|Name=EsuBft329_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5892bp|location=Sequence derived from alignment at Scaffold_604:154640..160531- (Ectocarpus subulatus male Bft15b)
ATGGAAGACGAGCAGCCGTCCAGCGATTCGGATGAACTGCCCGCTCCGAA
GGGGAAGCCGCGAGATCGGAAGGCGAGGGAGAAGGTAAAACTTGCGATGT
ACAAGATTGTGAACAACGACGCCGGGAATCCCGTGGATATGTTGATTGCT
GCCAGCGATCGCGTTGATGACTTGGAAGAGAAGTTGGAAAATGCGAAAGA
AGCAGAAGCAAAAATTACAAGGATCACTCAAAACCTCTCAGTAGCGCGGG
AGGCGTACGAAAAAATCTACAAAAAGACCAGGCCTGCTGCAGAGAAAGCG
GCGGAGGAAGAGGAGGAAGAAGAGGAAGAGAGTGAGGTTTCGTAGCGATA
TCTCGTGAAGGCCCTTCGGACGAACCAAACCTGACTTCTTCCAACGACGC
ATGAAGAGGATGTCTTGTCGTTTCGGATTTGATTCACACGGCATAGGTTG
GGTACATGCATTTTTTTGAGTATGGCTAGTTTTTTTTCCGTTGTGTGCAT
CACGAAGGTAGGGCACTGCTCGTATGTTCTTTGAGTGTGGACGGCGCATG
GCGTGATCCACCCCTCCAGCATGTCTTTCTTCTTTCGGTTTCGGCGGGGG
AACATTAGAAGTTTGTTGTTCAGTGAGGGACCAGGGTCTTCTCTGTCGGG
CGTTTATGTGCAGGCGTACGCATTTTTGGCTGCCGGAGAGCTGAGCCCAG
AGACCAGAGACATTGGTTCGGAGGGTATTTCATTTTTGTCACTTAGCTTC
GAAAATATGATATGGGATTTGAATGTGTAGGAAAGTACAAACAGTAGTGC
GGGCTAGTAAGCCCGGAGGAAAGTGCGGGAGATGCAACTCCCCACGGAAG
GAAAAAACAGGGGACAGGATCTAGTAGCCCCTGCTTGAGCAGCTGATGCT
GGCCCTATCCTTGACAGAGTCCTTTACCTTCCCTTGGCAACAGCTACTGC
TGTTCCACACGAGTTAATAACAAGTGAGTTCGTCTTCACGAGTGTCCCAG
ATTGCACCGCGCGTGCATATCCTTTACATTTGGCGTTGTCGGCATAAACG
TACAGCGTGCTTTCTGGGGTTTGTGTTTGGGCGACTCGAACCTGCTGCAC
GCAGCTTCCTTCGCTTTCGTCTCCACACAATTTAGCTTTGCCTCGCTGAT
CGGTATGTCTCACTTAGCGTCGGCTCCTCGGACCCGGCTTCGGCCAGTCC
AGAGCCCTCAGAGTGTTCTCGCTCGCAGGTGTCTCCACACAGTGCTTCGG
CTTTCGGGCCGACAGCCGACGATTCCCAATCGTCGTTGTTGCCGTCTTTT
GATGGCGCGAGTGCTGCTGACCCCATCGCAGAAGCCACCCGTTTGTCAGA
GCTTCGCGCTCAACGCCGACGGGAGGAGTTCGCCTCCACGGCTTCTACTG
ACGCTAACCCCGTGGGTGCTGTCCTCAAATTGCCTGCACCCACAGCAGAA
GCTTCGGTTTCCACCTCTGTCCTTTCGAGTACCCAGCCTTCTGTTTTTAC
AGCCGCTGGTGGTGTGTCCCAAGTTTTCCCGCCGGAACCACATGTTGCTT
ATTCCTTATTCCACTTTTCCCCTCACCTCCACCGCCGCTGAGCCTTCTGC
TGTTCGGNCATTGCCTGCACCCACAGCAGAAGCTTCGGTTTCCACCTCCG
TCCTTTCGAGTACCCAGCCTTCTGTTTTTACAGCCGCTGGTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAAGTTTTCCCGCCGGA
ACCACATGTTGCTGATTCCACTTTTCCCCTCACCTCCACCGCCGCTGAGC
CTTCTGCTGTTCGGGCAGACATTGGCTTTGACAATACTGGCTCTGTAGTG
CCACGCTTGCCTCATGGCTCTGTTGTTGGCCGCGCACTGCATTTCGATTC
CACCGTGCCGGCCATTGCTCCTTTTTCGTCGCGTAGCAGTCGCACACAAG
CCGCCGCTGGTGCCCAACGGCTTTTTGACCGTCGTGCATCCGTTTCAGTG
GCATCAGTGCCTTTGGATTTGACTGCTTCACATGCATCTGTTCCGGTGGT
TTCGACTGCCTTTGCGGTTCCGACCGCTTCCAATGCAACCGTCTCAGTAG
TTTCGACTGCCCCCGTTGCATCTGCTCCTGTCGTTTCGACTGCCGTGGCT
GCTTCCCTTGGTCGTGATGCACCTGTTTCTATAGTTTCGACTACTTCAAC
TGCATTTTGTTGCTGCCTTGCAATTTCTACGCTCCTGACCATGATGGTTG
TATATGCCCTCTTCCCCGCCTGTAGCAATCCAGTGGCTGACCCTCTCATG
ACCTTGGCCCGCCCGTCTGAGCTTCGTGCTGCACGCCGGCGAGAGAGGTT
CGCCTCAGCGTGTCTCTGCTCGATTCTACCTCTGCACACATCTGTCTCGT
TAGGGGACTTCGGTTCCAGACACACCAACAGTTGTTGAGCCCCGGCTTTC
CGCTGAAGCCGCTGCCGTCGTTTGAGCTTCGGTTCGTTTGCTACAGCAGT
ACAGTACCTTGGCTGTTGAGCTTCGGCTCTTTTGCCAGGTTCGGTTTGTT
TGACAGCTTCGACTGTTGAGCTTGGCTCTCTTCTCAGCTCCAGCTGTTTT
TTTTTTTCTCGCCTTCGTGGCGTTTGATGCTTTTGTTATTCGTATATCTA
CTTGCAGCGTTTTCTTTTCCCCCGCGGTTGTTGAGCGAAACTTGGCGTTG
ACGCTCCGTCGATCATGCAAGTAGCAGTATCTCTTGTCGCCGCACTCACC
TTCCGGGGTGAGCACCGTACAGCTCTGCTGCTGGCTGTGTGGGTATTCCT
TCTCTTTCCTTCCCCAACAAATTCCGTTTTTGGACCAAATTATTGAGTGG
GTGGTGTATCCCATGGTATTTCTTTTACATTCGTCGTAAGTGCGTAACCA
CATTATATGCATTAAATATCAAGAGTAGTCGAAGCTAACCGGTTGATTAT
GACTTCGATCACCCAAACCGGACACGTGATGTAGCTTCGGCTCACACCGT
CTGTGTCTGCAGTTTCCACTGCTCGCAAACGGCACTAACCGGCTGTGTAT
GGCTTATTGTATGACTTCGGTCACCCACCCCACTGGACACGTGCTGTAGC
TTCGGCTCACGCCTGTGACAGCAGTTTCGACTGCTCGCCGTGCTCACACC
GCGGTTTCCATGCCACTAGTTTAGACTATGCCCGCAGTTTCGATAGCCCG
CCGTGCTCGCACCGCGGTTTCCTTACCTGTTGTTTCGACAACCAACCCCA
ATGCTAGTTGCTGCTTCGGCGTTTCTAGCTGTAACCTCGATTACTGCTGC
AGTCTCGACTGAAACCTGCTATTTCGCTACCTGCCGTCGGCTGCCTCAAT
ACAGGACGCCGCTGATGCGGCCAACGGGTCTCGGCCCGACCTCCACGATG
TGGTGAGCTGCCTCCTCGTGGCGATGCGGGCGGCCACCATGAACGCCACG
TCTCCGGTGGTGTGGCCCGGCTGCGCCGTGGCGACTCCGGCATCTCCGGC
GTTCCAGCAGCCCAAGGCCGGCCGCGTCAAGGCCACGCCGGTCGAGCCCA
TCGTGCGAGAGAGTAGCTCAGGCGAGGACTCGGGCTGGAGTTCCGCGGGA
GCCTCTCGCCCCCCCCGGAGCCATCTTCATTGGCGGGCAATGGCCGGGCA
CGGCAGTAGGCCAAGCGTCACACGAGCTGGACTCGTGGCAAGGGAGGCGG
ATCGGGCTCTGGTTCAGACCGGAGTCTCACCCGGAAGCACGGCGCTCCGA
AGGGTCCTTCTCCCAGGCAAGTAGTCCCGTCCCTTATGGATGCGACTTTG
AGTGATCGTTTTGATGATGTTTTTTCACAGGCTTCGCCCCCCCCCTCGAC
TTCGGTTGTTGGTATGGTTTCGGCCCCCTCTGTTTCCTCGGACTCAGGGC
GTTTGCGTCGTGTTGCGTTTTCGGACCTTCCCCCGCCTTCAGATTCCCCT
GTTTCTTTGGAACCCTTTGCACCTTCTGTCCGTTCTGCCGCATTCAATGN
TCACACGAGCTGGACTCGTGGCAAGGGAGGCGGATCGGGCTCTGGTTCAG
ACCGGAGTCTCACCCGGAAGCACGGCGCTCCGAAGGGTCCTTCTCCCAGG
CAAGTAGTCCCGTCCCTTATGGATGCGACTTTGAGTGATCGTTTTGATGA
TGTTTTTTCACAGGCTTCGCCCCCCCCCTCGACTTCGGTTGTTGGTATGG
TTTCGGCCCCCTCTGTTTCCTCGGACTCAGGGCGTTTGCGTCGTGTTGCG
TTTTCGGACCTTCCCCCGCCTTCAGATTCCCCTGTTTCTTTGGAACCCTT
TGCACCTTCTGTCCGTTCTGCCGCATTCAATGCTGCAGACTCCGGACATG
TACTTCGCGTTGAGTTTTCGAACTTAGCCCCGGTTTCGACCACCCCTGTT
CCTTCGGAACCCTATGCACATTCTGTCTGTTCTGCCGCATTCAATGCTGT
AGACTCCGGGCATGTACGTCGCGTTGAGTTTTCGAACTTAGCCCCGGCTT
CGACCGCCCCCGTTTCTTCGGAATCCTTTGCACCTTCTGTCCGTTCTGCC
GCATTCAATGCTTTAGACCCCGAACATGTACGTAGCGTTGAGTTTTCCAA
CTCACCCCCGGTTTCGACCACCCCTGTTTCTTTGGAAACCTCTGCACCCC
GTAGCCTTTCTACCGCTCGCCATGCTGTAGATCCACAAATGATGCAGAAC
CCTGGGTTTTCGAACCTCAACCCCCCTTCGGCATTCGATCCACCAGTGCC
GGGTGTTTTGGGTAGCATGTCGTCTTCAGACCATGCCCCCACAGCTGCTT
CGGTAGCCGTCGCCGCACCCCCCGCTGTCTCCGATGATCGTGCTTTGCCA
CTTTCTCCTAACACAGCACACACTCGTCAAGCATCGATCGATGCGACTGA
TGCAGCTGCTCGTAATGCTCATGTAGCTACAGTACAACGAGCGTACATCA
CCTTCAACTTGAAAAAAGTTGAGAATGTCGCTACCATGCCTTTCCCCGCT
ACTCTGTTGCCGGGAGATGGCTATCAGCAGCTTGTTCGCACAACAAGAAC
GGCTTTGTCCGATATTTTGCTGTTGTGTGATGAGCAGAGTGAAGGTTTGA
CAGGCGTCGATTTTGTGCGTGGATGGGAACGTCCTCTCGAAAAAAAACTT
TTGAGTGCGATCACTCCCGACAAGCCCTCTACCGCCGATCTCGTCCTTGC
CCTTACTGATTTCTTTCAGCAAGTGAAACGGAGCTTGGATGGAGGAGCCC
CTGGACCAGACGCTTTCCAGCTATTGTCGCGTCACCTGGCGGAGCAATTT
GACGTCGGAGACCGCCAATAGTCGTTTTTGCGGCTGCAACAATTTGGCGT
AGCAGATGGTACTCCTTTTGCGGATTATCTTCGGGCTTTCCGTTTGTTAG
TTTCGTCTGTGACTGGCTCTGAGCGTACTTTGGCCCCTAGTGTATCCATG
GTTCTCGAAATAGTGCGAAGCTCGGTCGACAAGCAATTTCCGAGTCTGTC
TCCGCTTTTGTACCCGGGTGTTTTGTCCACTGCGGTCACTCCCTTTGAGT
CGATTGCGGTAATGTGGGAGGCGTTCGCGCCTTTGGCGACTAGTAAAACC
CCGGCTATCTGTGGTTCAACTTATTTTCGTTGACCTCGACCCGTGACTCT
CTGCAGCCTCGGCGGCCTAACCACCGCGCCCCTGCGTCTTCGGGCCAGTG
GGCATCCGGCTTCGCACAGAACCCTGTAGTTTTGCCCGTGCAACCTCAAG
CCACGGATCCTTTCACGCACAACTACGACTCGCGGCCTGCTTCGCAAGCC
GACTGGTCTGATGTATACGCCCTCACCGCCAATTTTCGTAAC
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Coding sequence (CDS) from alignment at Scaffold_604:154640..160531-

>EsuBft329_13a-0001 ID=EsuBft329_13a-0001|Name=EsuBft329_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=345bp|location=Sequence derived from alignment at Scaffold_604:154640..160531- (Ectocarpus subulatus male Bft15b)
ATGGAAGACGAGCAGCCGTCCAGCGATTCGGATGAACTGCCCGCTCCGAA
GGGGAAGCCGCGAGATCGGAAGGCGAGGGAGAAGGTAAAACTTGCGATGT
ACAAGATTGTGAACAACGACGCCGGGAATCCCGTGGATATGTTGATTGCT
GCCAGCGATCGCGTTGATGACTTGGAAGAGAAGTTGGAAAATGCGAAAGA
AGCAGAAGCAAAAATTACAAGGATCACTCAAAACCTCTCAGTAGCGCGGG
AGGCGTACGAAAAAATCTACAAAAAGACCAGGCCTGCTGCAGAGAAAGCG
GCGGAGGAAGAGGAGGAAGAAGAGGAAGAGAGTGAGGTTTCGTAG
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