EsuBft329_24a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft329_24a-0001
Unique Name	EsuBft329_24a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_604	contig	Scaffold_604:461..2358 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	164328.Phyra85763
ProteomeId	EsuBft329_24
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	4776\|Peronosporales
Length	1898
Hectar predicted targeting category	other localisation
Evalue	1.82e-69
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QGIS@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	transposition, RNA-mediated
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824
GO	0097159
GO	1901363
GO	0090304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft329_24a	EsuBft329_24a	Ectocarpus subulatus male Bft15b	gene	Scaffold_604 461..2358 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_24a-0001-exon	EsuBft329_24a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 461..2358 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_24a-0001-exon	agat-three_prime_utr-12910	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_604 461..1041 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_24a-0001-cds	EsuBft329_24a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_604 1042..2358 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_24a-0001	EsuBft329_24	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_604 1042..2358 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_604:461..2358-
coding sequence from alignment at Scaffold_604:461..2358-

spliced messenger RNA

>EsuBft329_24a-0001 ID=EsuBft329_24a-0001|Name=EsuBft329_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1898bp|location=Sequence derived from alignment at Scaffold_604:461..2358- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGAGTACATGTCGATTGCGGAGAGACGTATGCACCGACTGTAGC
GGTTTCTAGCGTTCGCTTGTTGGCAGCGATGGCGTGTGAGCAAAATCTTT
CTCTCCGTCATTTTGACATCAAGCAAGCATTTGTCCAGTCGGATTTGGAT
GAGGATGTTTTCATGCGTCTGCCAGAGGGGTGTGGTAGATTGTCAGGCAT
GATCGTGAAGTTGAACAAGAGTCTGTATGGCCTCAAGCAGGCATCAAGGC
AGTGGCATTCACACTTGGCGAAGTGTTTGATTTGTTTGGGTATTATTCAG
TGCATGGCGGATACGTGTGTGTTTCGGTTGATCGGGGAGGGAAGAGTGGT
AGTGACTCTGGTGGTACATGTAGATGATATATTTTCGATAGGAGAGGAGG
AGAGGTGTGACCAGTTTGGCAGAGACCTCAGGACTATGGTACCTGTGAAG
AATCTTGGGGACTTGAGATGGTACCCTGGATGTTTTTATGAGAGAGATTG
GGATGCAGGGACTTTGAAGATCTCGCAGCAGACGTACGCTGAAGAGTTGG
GGATGGAGTTTGGGGTAGAGTACGGGAAGGAAATTCCTCTTCCTGTAGGG
TTGAAGCTTTCAGAGTTTGACCAGGATGAGGAAGTGGTATCATGGCCTTT
TCGTGAGCTGATAGGATCATTGATGTGGCTGGCAACGCAAACGAGGCCAG
ATATCGCGAATGCAGTAAGAGCGGTAGCACGGTACTGGGCCTCTCCCAAA
GAAATTCATTGGAGAACAGGGCTTGGTATTTTAGGGTATGTGGTACGGAC
TAGTGACTTGGGTATTACATTCAGGAGGGGTAGTGTAGCAGGGTTGAGCA
TGGAGGTGCTTGCAGACGCAGACTATGCAAGTAAGGCTGCCGATAGGAGG
TCTGTGTCAGGGGGATTGGTGATGTGTGGGGGGGGATGTATTCCTTGGTT
TTCAAGGACCCAGAAGTGCGTCACGTTGAGCACGACAGAGGCGGAGTATG
TCTCTTTTGCGGATGTGATGAAGGAAGTGTTGTTTCTGAGGCAGGTGTGG
CGTTTCATGTTACCAGAAGCAGGCATGCCGTGTATTCCGGTGTTCGAGGA
TAACCCGGGGGCTATTCAGTTGGCGCAAAACCCGATAAGCAACAGTAACT
CGAAGCACATTGACGTAAGGCACCACTTTATCAGGGAACTGGTGGACATG
AAGGAGATATCGATTTTTCACGTGGAATCGGCGTATCAACATGCTGACTT
TCTCACGAAAGCACTTCACGCGGGAGATTTTGAGTTTCATCGTAACTACG
TGATGAGTATGGATTAGTATATTGGTGTTTGGATTTATTTTGTGTGTGAT
CAAACTACTGGGGTGGCAACATTTTACATTTTTGCCTATGGTATTTCTCA
ATTGATGATGTTCTAGGCTGGGGGACAACTAGTTCACTGAAGTTCGAAGA
AGTATAACTGGTATGATCGGGGATGGTTATTGATGTCTAGCCAGTGAGGC
TATTGTTCTGGAGTTGAATTGAGTTTCTGATTTTATATTGATTTTCTTGT
GTTTTGGAGCTATTTAGGATCGAAAAAGACATGACATGGTCACAAGCAGG
GGGGCTGATAGATATACTTATAGCAATGCCAAGTGGTTGTAGGATTGTGT
GGTGCGTGGAATGTATTTCCAGGGTGTGCAAGGTACCCCTATTGTATACT
TCGTCGCCCCCTCATGGTGGTGCGTGCACGCGTGCGTTCAGTTCGTGTGA
GTTCATGTGAGTTCATGTGAGTTCATGTGAAGGAGAAGTTTATGCAACAA
ACCCTACACGTCTTTCCTCCTTGGCGCGAGCTCGCCGAGTTGCCGACACC
CTATTCAACACACGTCTTGCGACAAGCTACCCCCAGTTCGGATCATCC

protein sequence of EsuBft329_24a-0001

>EsuBft329_24 ID=EsuBft329_24|Name=EsuBft329_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=438bp
MQRVHVDCGETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLD
EDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLAKCLICLGIIQ
CMADTCVFRLIGEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLRTMVPVK
NLGDLRWYPGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG
LKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYWASPK
EIHWRTGLGILGYVVRTSDLGITFRRGSVAGLSMEVLADADYASKAADRR
SVSGGLVMCGGGCIPWFSRTQKCVTLSTTEAEYVSFADVMKEVLFLRQVW
RFMLPEAGMPCIPVFEDNPGAIQLAQNPISNSNSKHIDVRHHFIRELVDM
KEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSMD

mRNA from alignment at Scaffold_604:461..2358-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft329_24a-0001 ID=EsuBft329_24a-0001|Name=EsuBft329_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1898bp|location=Sequence derived from alignment at Scaffold_604:461..2358- (Ectocarpus subulatus male Bft15b)
ATGCAGAGAGTACATGTCGATTGCGGAGAGACGTATGCACCGACTGTAGC
GGTTTCTAGCGTTCGCTTGTTGGCAGCGATGGCGTGTGAGCAAAATCTTT
CTCTCCGTCATTTTGACATCAAGCAAGCATTTGTCCAGTCGGATTTGGAT
GAGGATGTTTTCATGCGTCTGCCAGAGGGGTGTGGTAGATTGTCAGGCAT
GATCGTGAAGTTGAACAAGAGTCTGTATGGCCTCAAGCAGGCATCAAGGC
AGTGGCATTCACACTTGGCGAAGTGTTTGATTTGTTTGGGTATTATTCAG
TGCATGGCGGATACGTGTGTGTTTCGGTTGATCGGGGAGGGAAGAGTGGT
AGTGACTCTGGTGGTACATGTAGATGATATATTTTCGATAGGAGAGGAGG
AGAGGTGTGACCAGTTTGGCAGAGACCTCAGGACTATGGTACCTGTGAAG
AATCTTGGGGACTTGAGATGGTACCCTGGATGTTTTTATGAGAGAGATTG
GGATGCAGGGACTTTGAAGATCTCGCAGCAGACGTACGCTGAAGAGTTGG
GGATGGAGTTTGGGGTAGAGTACGGGAAGGAAATTCCTCTTCCTGTAGGG
TTGAAGCTTTCAGAGTTTGACCAGGATGAGGAAGTGGTATCATGGCCTTT
TCGTGAGCTGATAGGATCATTGATGTGGCTGGCAACGCAAACGAGGCCAG
ATATCGCGAATGCAGTAAGAGCGGTAGCACGGTACTGGGCCTCTCCCAAA
GAAATTCATTGGAGAACAGGGCTTGGTATTTTAGGGTATGTGGTACGGAC
TAGTGACTTGGGTATTACATTCAGGAGGGGTAGTGTAGCAGGGTTGAGCA
TGGAGGTGCTTGCAGACGCAGACTATGCAAGTAAGGCTGCCGATAGGAGG
TCTGTGTCAGGGGGATTGGTGATGTGTGGGGGGGGATGTATTCCTTGGTT
TTCAAGGACCCAGAAGTGCGTCACGTTGAGCACGACAGAGGCGGAGTATG
TCTCTTTTGCGGATGTGATGAAGGAAGTGTTGTTTCTGAGGCAGGTGTGG
CGTTTCATGTTACCAGAAGCAGGCATGCCGTGTATTCCGGTGTTCGAGGA
TAACCCGGGGGCTATTCAGTTGGCGCAAAACCCGATAAGCAACAGTAACT
CGAAGCACATTGACGTAAGGCACCACTTTATCAGGGAACTGGTGGACATG
AAGGAGATATCGATTTTTCACGTGGAATCGGCGTATCAACATGCTGACTT
TCTCACGAAAGCACTTCACGCGGGAGATTTTGAGTTTCATCGTAACTACG
TGATGAGTATGGATTAGTATATTGGTGTTTGGATTTATTTTGTGTGTGAT
CAAACTACTGGGGTGGCAACATTTTACATTTTTGCCTATGGTATTTCTCA
ATTGATGATGTTCTAGGCTGGGGGACAACTAGTTCACTGAAGTTCGAAGA
AGTATAACTGGTATGATCGGGGATGGTTATTGATGTCTAGCCAGTGAGGC
TATTGTTCTGGAGTTGAATTGAGTTTCTGATTTTATATTGATTTTCTTGT
GTTTTGGAGCTATTTAGGATCGAAAAAGACATGACATGGTCACAAGCAGG
GGGGCTGATAGATATACTTATAGCAATGCCAAGTGGTTGTAGGATTGTGT
GGTGCGTGGAATGTATTTCCAGGGTGTGCAAGGTACCCCTATTGTATACT
TCGTCGCCCCCTCATGGTGGTGCGTGCACGCGTGCGTTCAGTTCGTGTGA
GTTCATGTGAGTTCATGTGAGTTCATGTGAAGGAGAAGTTTATGCAACAA
ACCCTACACGTCTTTCCTCCTTGGCGCGAGCTCGCCGAGTTGCCGACACC
CTATTCAACACACGTCTTGCGACAAGCTACCCCCAGTTCGGATCATCC

Coding sequence (CDS) from alignment at Scaffold_604:461..2358-

>EsuBft329_24a-0001 ID=EsuBft329_24a-0001|Name=EsuBft329_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1317bp|location=Sequence derived from alignment at Scaffold_604:461..2358- (Ectocarpus subulatus male Bft15b)
ATGCAGAGAGTACATGTCGATTGCGGAGAGACGTATGCACCGACTGTAGC
GGTTTCTAGCGTTCGCTTGTTGGCAGCGATGGCGTGTGAGCAAAATCTTT
CTCTCCGTCATTTTGACATCAAGCAAGCATTTGTCCAGTCGGATTTGGAT
GAGGATGTTTTCATGCGTCTGCCAGAGGGGTGTGGTAGATTGTCAGGCAT
GATCGTGAAGTTGAACAAGAGTCTGTATGGCCTCAAGCAGGCATCAAGGC
AGTGGCATTCACACTTGGCGAAGTGTTTGATTTGTTTGGGTATTATTCAG
TGCATGGCGGATACGTGTGTGTTTCGGTTGATCGGGGAGGGAAGAGTGGT
AGTGACTCTGGTGGTACATGTAGATGATATATTTTCGATAGGAGAGGAGG
AGAGGTGTGACCAGTTTGGCAGAGACCTCAGGACTATGGTACCTGTGAAG
AATCTTGGGGACTTGAGATGGTACCCTGGATGTTTTTATGAGAGAGATTG
GGATGCAGGGACTTTGAAGATCTCGCAGCAGACGTACGCTGAAGAGTTGG
GGATGGAGTTTGGGGTAGAGTACGGGAAGGAAATTCCTCTTCCTGTAGGG
TTGAAGCTTTCAGAGTTTGACCAGGATGAGGAAGTGGTATCATGGCCTTT
TCGTGAGCTGATAGGATCATTGATGTGGCTGGCAACGCAAACGAGGCCAG
ATATCGCGAATGCAGTAAGAGCGGTAGCACGGTACTGGGCCTCTCCCAAA
GAAATTCATTGGAGAACAGGGCTTGGTATTTTAGGGTATGTGGTACGGAC
TAGTGACTTGGGTATTACATTCAGGAGGGGTAGTGTAGCAGGGTTGAGCA
TGGAGGTGCTTGCAGACGCAGACTATGCAAGTAAGGCTGCCGATAGGAGG
TCTGTGTCAGGGGGATTGGTGATGTGTGGGGGGGGATGTATTCCTTGGTT
TTCAAGGACCCAGAAGTGCGTCACGTTGAGCACGACAGAGGCGGAGTATG
TCTCTTTTGCGGATGTGATGAAGGAAGTGTTGTTTCTGAGGCAGGTGTGG
CGTTTCATGTTACCAGAAGCAGGCATGCCGTGTATTCCGGTGTTCGAGGA
TAACCCGGGGGCTATTCAGTTGGCGCAAAACCCGATAAGCAACAGTAACT
CGAAGCACATTGACGTAAGGCACCACTTTATCAGGGAACTGGTGGACATG
AAGGAGATATCGATTTTTCACGTGGAATCGGCGTATCAACATGCTGACTT
TCTCACGAAAGCACTTCACGCGGGAGATTTTGAGTTTCATCGTAACTACG
TGATGAGTATGGATTAG