EsuBft949_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft949_5a-0001
Unique Name	EsuBft949_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_597	contig	Scaffold_597:89557..95037 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft949_5
Protein domains	IPR000048
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	205
Hectar predicted targeting category	other localisation
Ec32 ortholog description	IQ motif protein
Ec32 ortholog	Ec-07_004620.1
Date last modified	2016-06-13
Date creation	2016-06-13

Cross References

External references for this mRNA


Database	Accession
GO	0031227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft949_5a	EsuBft949_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_597 89557..95037 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft949_5a-0001	EsuBft949_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_597 90314..93360 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft949_5a-0001-exon	agat-exon-32138	Ectocarpus subulatus male Bft15b	exon	Scaffold_597 89557..89662 +
EsuBft949_5a-0001-exon	EsuBft949_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_597 90280..90381 +
EsuBft949_5a-0001-exon	agat-exon-32136	Ectocarpus subulatus male Bft15b	exon	Scaffold_597 92421..92568 +
EsuBft949_5a-0001-exon	agat-exon-32137	Ectocarpus subulatus male Bft15b	exon	Scaffold_597 93340..95037 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft949_5a-0001-exon	agat-five_prime_utr-15213	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_597 89557..89662 +
EsuBft949_5a-0001-exon	agat-five_prime_utr-15214	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_597 90280..90313 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft949_5a-0001-cds	EsuBft949_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_597 90314..90381 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft949_5a-0001-exon	agat-three_prime_utr-23390	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_597 93361..95037 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_597:89557..95037+
coding sequence from alignment at Scaffold_597:89557..95037+

spliced messenger RNA

>EsuBft949_5a-0001 ID=EsuBft949_5a-0001|Name=EsuBft949_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2054bp|location=Sequence derived from alignment at Scaffold_597:89557..95037+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCGCCACACGTCAGAACTTCCCTTTTCCTTCTCCGCTATCTGCCCACGC
TCCCTGTACCCCCTGTCTACCGTATACCCTCGACTCATCGAGCTTAGCCA
CCGAAGGTCTGCGTACCTACTCCGCCGTCCCATATCAACCATGGGTGACA
TCAAGGACCAGATGGCAGCCAAGGTGCAGGCGGCAGCTCGGGGGTACATT
CAACGCAAGACTGGGATGGGCGGTAAGACGGCGGGCAAGAAACACAAGGT
CGGCAAGGGCGGCAAGGGCGGCAAAGCTGGAAAGGGTGGCAAGAAGGCCA
AGAAGAGCGACGACATGAACGCCATGATCATCCAGGCGGCCTTCAAGAAG
TACAAGGAATACCAGAACAAGAACTAATGCCTGATGTAACTGGCCGTCAT
CCATGAGCCACGGACATCTGTCACGCTCGTCGAAAGAGGGGAGGAGAGGC
ATTCGGTCACCGCGTTTCTTCTTGTTCCGTGAAAGGCAACCCCTCTCACC
CTGACAACTTGGCGTGTGGCGAGCGTTTCCGTTGCCACTCCGGACCCTCT
GCGAGGCTTGGAGTTGGGGCGTGTCAATAGATGTACTAGTGCTGAAATTC
CAAATCTGGTCAATTAGATGCACTTGACCGAGGTGGTGCGTGAGACATAA
AGAGTCCGTTTTGGGGGGTTAGCTTCAGTGTAGTGCAGAGAAAAAAGTTT
GTGTGCTTGTTGTTGCCTGCAATCGCGCGTGACGTGAGCGCGTCTGCGTA
GGTCTTCCGTGCCGTATACGCCGGAATAGGGTAGTGTTTCCACTGAAGGA
GCCTAGTTGTTTTCTTGTGCATTGTGCGCAATGCTCCTTCGTTTTGTCGC
TGTTGGAAGATGAGCGAGCGAGAGAGTGCTGCTTGCGGAGGAAGCTCTAC
GCAGTACCATACATACCCCGGGTCTGGTTGTGGGCTGAAGAGTTTGTTGT
TCCAGGCATGTGTGATTTCGCCTTTGTTGTCTCGGTCTTGAGGTCTATCC
ATGTCGGCCATAGGTGCATGTTTCAAATGGGCGGATCACTCGGAATGCCC
TCCAGTCTAGATATCCACGCTACGGAGCTCGGGTTGCGCAGGAAGGGCTT
TCGATAATTTTAACCTTTTTTTTTTGTTTCCGTGAAATGAATGAATGTAC
AGCCCAGGTTCAACTTTGTTTTTGGCTGGTATCCTTGAAGCAAGGCGCTC
CTTCTACAGGATGACTTGTTCCGATCGTTGTTCCTTCGAAGGCCGCACTG
AAATAGCTTTTCTCTTACTTCAAAGTGTGTTGTTCCCGGCTGGCATCTGG
TGCTGCTGTTTTGAGGCAAAGTAATGTGTGTTACCCCGTTGTTTCCTTAG
TGATGGCGTGTCAGGCCAGGTCTCCGTTACCTGCTAGCCTTGCTTGCAAC
GTTTCTCCGTCGTCCTTTGGATTTTCGTACCCGGGTATCCAGACCCTTCA
TTTGCCGCGTCCTTGCTCGTCGTCCGTGTGTGATTGTGTGTTCTGTGTTA
ACCCAACTCGTGTGGGATGTGCGCAAAAACGGTGCGTGCTGACCGTTCGT
TGTGATCTGCTGCTTGTTGCGACAAGCGGGCGCACTCCTTTTAGCCTTTT
TTGCATCGTTCCGTCCTAGATGAAGTAGGTCTGGTGCGCTGAGTTTTCGC
AGTCGACATTAATTGCGCAGCGCGACTCGTACTTACTTTACTTGCGCGCA
AGTCTACGTGCCTGTTCAACCCCACCCTCGAGGAAGCGCTTTATTTGTTC
CATTAGTTTAGTATGCAGAGATGTCAGTAGGCAATAGGCAGTGGAAACAC
CCGCGTGGGCTCATCGTGCATTTTTCATTCAAAGTGTAGAAGTTGTTTTG
GTCTCGGGTTGTTCGTGGTTAGTTGCGGTCAAGATGCCTATACTTTCTGC
AGTGGGGTGTAGGGCGTAGGCCGTGGTCACAAAGAACCGATTCTACGAAG
AAGGTCCATTAAAAATGAAACGGGTGGTTGCCGACAGGGAGAATCTGCGC
TTGCTTATTGGACGCATTTGAAGTGCTGCTGTCCAAAGTATACGTACGAG
CCAC

protein sequence of EsuBft949_5a-0001

>EsuBft949_5 ID=EsuBft949_5|Name=EsuBft949_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=78bp
MGDIKDQMAAKVQAAARGYIQRKTGMGGKTAGKKHKVGKGGKGGKAGKGG
KKAKKSDDMNAMIIQAAFKKYKEYQNKN

mRNA from alignment at Scaffold_597:89557..95037+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft949_5a-0001 ID=EsuBft949_5a-0001|Name=EsuBft949_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5481bp|location=Sequence derived from alignment at Scaffold_597:89557..95037+ (Ectocarpus subulatus male Bft15b)
CTCGCCACACGTCAGAACTTCCCTTTTCCTTCTCCGCTATCTGCCCACGC
TCCCTGTACCCCCTGTCTACCGTATACCCTCGACTCATCGAGCTTAGCCA
CCGAAGGTGAGAAGGGGAGGGTGGCAGAACTAGACACTGCGCAGGAATTA
GGTAAGGGAAATAGACAAAGTGAGGAGGAAAAACCGCGCTCGCTCTATGC
ATATGCATATTTACACGGTTGAGCTTCCGATCCGCCTCCGGCGCTCTGCA
ATGTCATGTGTCATGTACGTCATTCCCAAGCCATGCTGGGTCCAAGGAGG
GGCGCCGCGTACCTGTACCGTATTCCGTGGCGGAAGGTGTTGTTGGCGCG
GACACACGCGATATCATCTAGTCGCGCTTCCTCAGCATGAGCGACGAAGA
TTAGACTGCTGTTGTTTTGTGGCGATCTCGATCTTGACAACACGAACCGC
TCACACGCCTTACAACCAACACTATCCACGTTTGCTGAGGAGTGACTTCC
TGGGTTGTGTTATACGCCGGCGAACAGTCCTGTACTACAGACGAGAACGG
CATGGGTGGGCACTGCTATTAGTTTCCTGTGGTGTCTATGCTGTCTGCTG
CCAGCTCGCTTGATTGACTCTCTTCGCTCGGACCCTCTGGAGTTCTTCCG
CACCATCGAAAAAAACACGAAGGAACAAGGAAGCATTTACGGCCATGCAA
TGTCACCATGTCGCTTGCAACAGGTCTGCGTACCTACTCCGCCGTCCCAT
ATCAACCATGGGTGACATCAAGGACCAGATGGCAGCCAAGGTGCAGGCGG
CAGCTCGGGGGTACATTCAACGCAAGTGAGTCTCTACTGAACGACAACGG
GGTGGTTGTGTTTTTCTTGTGGGTAGCGGTGGATTTTTTTATTATTTTTT
GTGGCTCTCGCGCTCGCTCGCTACATGTGTGGTGTTCGCTCAGTGCTCCT
CCCTTCGTTCCAAAGGGTGGTTCGTTGTAGTGGCTTGCTGGTGGTCGCCT
TATTCTGGTTCTGAACGATGGAACGAAGGTATCAGGTACCTTTGGAAGCA
GTTTACTACTGCTGGGAGCGATGGCGGGGGGTACCGGATACCGGGGCGGG
CAGGAGAGCGACTGGGTGTATCGCCTAGGAGAGGACCTCGTGGCGTTTGG
CATGAAAGAGGAGAAGGAGGGGGGGAGATGGAAAGAGAGCGCCAAGGACC
AGGAGGCGTGGTACGACAAGATCGAGGACGGGGCGGCATGGTTCATGAGG
AAATGGCACAGACAGGAGGCGGAAGCATCCGCGAAGCGCCAGCGCCAGCG
CGCGGAGGAAGCAGAGACGGAGAGTACGGCCGCCCCGGGCCCGAAGAGAA
AGAGAATCGGGGAAGCGGCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTGTGGGAATAT
ATATGTGTTTGTTTTTCGCCCCCCGTCTTGCTGCACCCCCTGGGGTGTGG
TGCAGGGCGGGGGATGCCTGGTCGGCGGGAACCCGGCACGGAACCCTCCG
GCGTTGTAGGCGGGTGTGGGAAGCGTTCCCCGTTCTCCTTTTATTTTATT
TTGATCGGTCTCCTCGACGCTCTTTCTCGTTTGGTGCGGTAGCTGGTCTT
TCTATCATTTTGTGTCTCTTCCGAGTGGTTTTTGTACCCTATTTTTTTCT
GTTTCTTCGTGGGGTCGTGTATGCCGGGTTTTGAGACCACGGGCTCCCAA
TCTCAATTTTTTTTTAGAGCTAATGTGAGAAACAACAACAACAAACAACT
ACAGAGCACGTGACGCTTGGAACACTTCCACGGGGTAAAAAAAAAAAAAG
ACTTTCCAGCCACAAATATCTTTCTTGTTCGCTGTTCGCAATATCGATCT
CCGAAGGGATAGTTGTTGTTGATTATCGACTCTCGATAACTTCTAAATGC
AGCAGGTGCCGTGTCTGGGTATTGATTTGTACATACGTCGTAGTCTGGAG
GAGTCGGTGGAAAGTTACAGTTTTAACCACACACGACCGCCCCCTGTTTG
GGATAGGCGTGTAGTTCGACTTACAGTGTCCGCTTTTTTTTTTTTTCGTC
GTCGCTCTTCGGCGCTCCCCGTATTCACTCATACAAATTTGTTCGGCGCA
GCAATATGCTTATCGCTAAACATCTGACGTACACTTGTGGTTGAATGACA
CCCCCATCGCCTGCAGTATTAGATATCTGCCGCCTACCTGGTGGTTTTGG
TTAATGCGTTAGGGATTCACAAGGTCTACTGCCCTTGCAGGAATGTTGAG
TACAAGTATAGAGCATGCCCACCGTTCGTGCAGCGTCTCTTTTAGATATA
CTAGGTACTATTTTTCGTTTTTGAGCTCGTTCGTCATGTAAGTAAACAAT
TCTGTCGAGCCCGCCCGACAACAGGACGTCTGCATCCTCTGTCCCCTGTC
TGCTGCACGAGGATTGAGAACCGTGACATGAACTCGTTTCTGGGGTCTTG
CCAGAGTGGACGCCTCATTTCTGACAGATCCGCCACGTTTTGCTTTGGAT
TTGTTCTACCGCAGGACTGGGATGGGCGGTAAGACGGCGGGCAAGAAACA
CAAGGTCGGCAAGGGCGGCAAGGGCGGCAAAGCTGGAAAGGGTGGCAAGA
AGGCCAAGAAGAGCGACGACATGAACGCCATGATCATCCAGGCGGCCTTC
AAGAAGTACAAGGTAAGGGCAAGCTGTAGCGAGTCACAAGCGCCCGCCAC
AAGCTCAGGTTTCGTTTCCAAGAGGTTCTGTTGCGGCTGCTGTGTGGGGA
TACACTGGTGTCGTTGAGCCCAAGCTGTGGTAGGTGCCTCTGGGGCGTGT
TGTTAGTCCTGACATTCAAACAGGGAGAAAATGAAATGCCCTGTTTCTTA
TTTCATGTCGATGTAGTGTATCCATACTGCTGTACCCGATGGGACACTTT
CTGAATTCGGACAGGAAGTACGGGACGTTTCAACGCGCTTCAGCGCCGGC
TGTAAGAAGATGAGGCCAACTAGTGGAATCATGATTGTTTAATGTACGAA
TGCGTTGACGGAAATCGTGAGAGCAGGCGGTGGTACGTTAGTCGTCAACC
CGCACCCTCAGTAGAAGAGGGCCTCGGAAGTACGCATTCAAGAATGGCCG
TGGATAGCAGCTTCCAGATTGTTTACTCGCGCTCTTAATCCTGCTATTAC
GATCAACCACCGACTTTTTCGATGGACACAAACGATCTGATGCCAGTGGC
ACATGAACGGGTAGAAGGCGCGCGAAGCTGGCGTGTGCAAATATCGTTTG
ATCATGACAGCGGAGTCTCGATTTGCCATTCTGCGCTGGTTCCCACATGA
TTTGTGTTGAATTTTTTTCAAGAAATAACTACAGTAGTTGAGAACTCGAA
GATGGAATCCTGTTGCCCAACGACTTGCCTGACTCACGCTTGCTTTTGTC
GCCCCATGGTACACCGCCATTCTTTGAAAACAGGAATACCAGAACAAGAA
CTAATGCCTGATGTAACTGGCCGTCATCCATGAGCCACGGACATCTGTCA
CGCTCGTCGAAAGAGGGGAGGAGAGGCATTCGGTCACCGCGTTTCTTCTT
GTTCCGTGAAAGGCAACCCCTCTCACCCTGACAACTTGGCGTGTGGCGAG
CGTTTCCGTTGCCACTCCGGACCCTCTGCGAGGCTTGGAGTTGGGGCGTG
TCAATAGATGTACTAGTGCTGAAATTCCAAATCTGGTCAATTAGATGCAC
TTGACCGAGGTGGTGCGTGAGACATAAAGAGTCCGTTTTGGGGGGTTAGC
TTCAGTGTAGTGCAGAGAAAAAAGTTTGTGTGCTTGTTGTTGCCTGCAAT
CGCGCGTGACGTGAGCGCGTCTGCGTAGGTCTTCCGTGCCGTATACGCCG
GAATAGGGTAGTGTTTCCACTGAAGGAGCCTAGTTGTTTTCTTGTGCATT
GTGCGCAATGCTCCTTCGTTTTGTCGCTGTTGGAAGATGAGCGAGCGAGA
GAGTGCTGCTTGCGGAGGAAGCTCTACGCAGTACCATACATACCCCGGGT
CTGGTTGTGGGCTGAAGAGTTTGTTGTTCCAGGCATGTGTGATTTCGCCT
TTGTTGTCTCGGTCTTGAGGTCTATCCATGTCGGCCATAGGTGCATGTTT
CAAATGGGCGGATCACTCGGAATGCCCTCCAGTCTAGATATCCACGCTAC
GGAGCTCGGGTTGCGCAGGAAGGGCTTTCGATAATTTTAACCTTTTTTTT
TTGTTTCCGTGAAATGAATGAATGTACAGCCCAGGTTCAACTTTGTTTTT
GGCTGGTATCCTTGAAGCAAGGCGCTCCTTCTACAGGATGACTTGTTCCG
ATCGTTGTTCCTTCGAAGGCCGCACTGAAATAGCTTTTCTCTTACTTCAA
AGTGTGTTGTTCCCGGCTGGCATCTGGTGCTGCTGTTTTGAGGCAAAGTA
ATGTGTGTTACCCCGTTGTTTCCTTAGTGATGGCGTGTCAGGCCAGGTCT
CCGTTACCTGCTAGCCTTGCTTGCAACGTTTCTCCGTCGTCCTTTGGATT
TTCGTACCCGGGTATCCAGACCCTTCATTTGCCGCGTCCTTGCTCGTCGT
CCGTGTGTGATTGTGTGTTCTGTGTTAACCCAACTCGTGTGGGATGTGCG
CAAAAACGGTGCGTGCTGACCGTTCGTTGTGATCTGCTGCTTGTTGCGAC
AAGCGGGCGCACTCCTTTTAGCCTTTTTTGCATCGTTCCGTCCTAGATGA
AGTAGGTCTGGTGCGCTGAGTTTTCGCAGTCGACATTAATTGCGCAGCGC
GACTCGTACTTACTTTACTTGCGCGCAAGTCTACGTGCCTGTTCAACCCC
ACCCTCGAGGAAGCGCTTTATTTGTTCCATTAGTTTAGTATGCAGAGATG
TCAGTAGGCAATAGGCAGTGGAAACACCCGCGTGGGCTCATCGTGCATTT
TTCATTCAAAGTGTAGAAGTTGTTTTGGTCTCGGGTTGTTCGTGGTTAGT
TGCGGTCAAGATGCCTATACTTTCTGCAGTGGGGTGTAGGGCGTAGGCCG
TGGTCACAAAGAACCGATTCTACGAAGAAGGTCCATTAAAAATGAAACGG
GTGGTTGCCGACAGGGAGAATCTGCGCTTGCTTATTGGACGCATTTGAAG
TGCTGCTGTCCAAAGTATACGTACGAGCCAC

Coding sequence (CDS) from alignment at Scaffold_597:89557..95037+

>EsuBft949_5a-0001 ID=EsuBft949_5a-0001|Name=EsuBft949_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=237bp|location=Sequence derived from alignment at Scaffold_597:89557..95037+ (Ectocarpus subulatus male Bft15b)
ATGGGTGACATCAAGGACCAGATGGCAGCCAAGGTGCAGGCGGCAGCTCG
GGGGTACATTCAACGCAAGACTGGGATGGGCGGTAAGACGGCGGGCAAGA
AACACAAGGTCGGCAAGGGCGGCAAGGGCGGCAAAGCTGGAAAGGGTGGC
AAGAAGGCCAAGAAGAGCGACGACATGAACGCCATGATCATCCAGGCGGC
CTTCAAGAAGTACAAGGAATACCAGAACAAGAACTAA