EsuBft1020_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1020_5a-0001
Unique NameEsuBft1020_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:158109..161279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LR00
ProteomeIdEsuBft1020_5
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length75
Hectar predicted targeting categoryother localisation
Evalue2.48e-35
EggNOG OGs29280@1|root,2R94D@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_5aEsuBft1020_5aEctocarpus subulatus male Bft15bgeneScaffold_581 158109..161279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_5a-0001EsuBft1020_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 158109..161279 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_5a-0001-exonagat-exon-58018Ectocarpus subulatus male Bft15bexonScaffold_581 158109..158303 -
EsuBft1020_5a-0001-exonagat-exon-58019Ectocarpus subulatus male Bft15bexonScaffold_581 158662..158730 -
EsuBft1020_5a-0001-exonagat-exon-58017Ectocarpus subulatus male Bft15bexonScaffold_581 159075..159164 -
EsuBft1020_5a-0001-exonagat-exon-58016Ectocarpus subulatus male Bft15bexonScaffold_581 159658..159757 -
EsuBft1020_5a-0001-exonagat-exon-58020Ectocarpus subulatus male Bft15bexonScaffold_581 160207..160314 -
EsuBft1020_5a-0001-exonagat-exon-58015Ectocarpus subulatus male Bft15bexonScaffold_581 160665..160789 -
EsuBft1020_5a-0001-exonEsuBft1020_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 161211..161279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_5a-0001-cdsEsuBft1020_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 158109..158303 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1020_5a-0001 ID=EsuBft1020_5a-0001|Name=EsuBft1020_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=756bp|location=Sequence derived from alignment at Scaffold_581:158109..161279- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGGCTCGTGGAGAACGAGCAGAGAATGGCCGACCTACACAAGAA
GATACTCAGAGTGGAAGAGGCGGACGCGAAGCGGAGGGCGGAGCACGACC
AGAGGGTGGCGCAGCAGCGGGCGGCGGCGGCGGAAAAGAGGGCCAAGAAG
GAGATGGAGAAGCACGAGAGGGAGAAAGTGGAAGACGAACAAAGGAAGGA
GATGATCAAACGTGCGGCAGAGGCCGAAGCCCGACAACTGAAGATCGAAA
AGGAGCTGGAGGTGCAACGGCTCGCCGAGGCCGCCAAGCGTGAGGAGGAA
CGGCGCGCCTTGAAGGAGCAGCAAGACCAGGCGACGGCCGCGCTGATCCG
GGCCCAGGAGGAGAAGGCCGAGGCGAAGAATAGAATCATGGCCGAGCGGG
AGGCACGGGTGCAAGCCCAGCTAAACGAGAAAAAGGCGGCAAAGGCGGCC
GAGGTGGCGGCTCAGAGGGCGTCTGCCGAGCAACGCATTCAGGAAGTCAT
GGAGAAGAACAGGAAAATTCAGCAGGACAAGAAGATCGCGTACGACCTTA
AGGTTGCCGAGGTGGCTCGCCGCAAGGCGGAGAGGATGGAGGGGGAAGAA
GCCCAGGCGAAAAAGAGGGCTGAAGAGCAGGCGAAACAGGACAGCATCCG
CGCCAAGGTGTGGGAGTTTGTGGACGACGAGGGAAGGGTAGGAACGCTCG
ACGAACGGGCGGAGCAGCACCGAAGGCATACATTGATCGCTAAGGCCTTG
TTGTGA
back to top

protein sequence of EsuBft1020_5a-0001

>EsuBft1020_5 ID=EsuBft1020_5|Name=EsuBft1020_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=251bp
MQRLVENEQRMADLHKKILRVEEADAKRRAEHDQRVAQQRAAAAEKRAKK
EMEKHEREKVEDEQRKEMIKRAAEAEARQLKIEKELEVQRLAEAAKREEE
RRALKEQQDQATAALIRAQEEKAEAKNRIMAEREARVQAQLNEKKAAKAA
EVAAQRASAEQRIQEVMEKNRKIQQDKKIAYDLKVAEVARRKAERMEGEE
AQAKKRAEEQAKQDSIRAKVWEFVDDEGRVGTLDERAEQHRRHTLIAKAL
L
back to top

mRNA from alignment at Scaffold_581:158109..161279-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1020_5a-0001 ID=EsuBft1020_5a-0001|Name=EsuBft1020_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3171bp|location=Sequence derived from alignment at Scaffold_581:158109..161279- (Ectocarpus subulatus male Bft15b)
ATGCAGAGGCTCGTGGAGAACGAGCAGAGAATGGCCGACCTACACAAGAA
GATACTCAGAGTGGAAGAGGTATGACTCTGCGAATGCGTGATCGCTACGG
CCCCGTGATCCATGATGCTGTTCGCGGTGCTGTCTGTGGAGGGGGTTGGA
GCGTGCTGGTGTTGGACATCACGTTATTAATTATATGTATTATTGGTGTT
CATGGTGTTCCTGCTGAGGTGCACGTGGTGAGCGGCGAAAATCCTTCTTT
GGGACTGCCCTAGAAAGCGGTAGAGTAGAGCAACGACGTGAGCGGTTTTG
CGGTGTCTTCGTGGTGGCTCATTCGAAAAGGAGGGGGTCGTGGAACGAGT
ATTGATGAAATCAACAAACTTTATTGGCAAACAACATTTCATGACCCACA
ACCCCCCCCAGAATCTTCGAAGATTGCGGCTGAATCACCCCTTGATGTAC
AATGATTGACCTGCATCTGGGTGGTGTTGGCCGGCATCAGGCGGACGCGA
AGCGGAGGGCGGAGCACGACCAGAGGGTGGCGCAGCAGCGGGCGGCGGCG
GCGGAAAAGAGGGCCAAGAAGGAGATGGAGAAGCACGAGAGGGAGAAAGT
GGAAGACGAACAAAGGTACGTGCAAGAGTGATAAATGTATACTTTCAGTG
AGCACCCATTTCTTCTACACTACTGGGTTGGTGTTGTTGCTGTTGGGAGT
GCTGCTACGCGGTTGATGCTCCGTTTTATGAGACAATCCACCCCCCACAA
CGACGAAAGTGCTTGGTTTTGGTGCGCAACGATGGACGCTCTCGTATACT
ACGACAGTCGTGTCGATCATTCCAGCAACGCTTCTACTGCTGCTGATTAT
GACGGTTGTCTTGCAAAGATGGACAGCGTGGTAACACTGGAGTTTATGGC
TCTGGGTGATGAATGCTTCCAACGTATCCCCACGGCCGGATTTCACACGG
GGGTTGGGCCATCAGGAAGGAGATGATCAAACGTGCGGCAGAGGCCGAAG
CCCGACAACTGAAGATCGAAAAGGAGCTGGAGGTGCAACGGCTCGCCGAG
GCCGCCAAGCGTGAGGAGGAACGGTAAGATGCACCGTACTAAGGGAAGGG
GGATTTCTCTCCAGCAAACTCACGGTGAATTGTCTTGCTTCCACGTCCAT
CAAACAATGAAGATGCACAATGTTTCGCGCTTTTTGTTATCGAACGTCGT
TTGCTAACATGTCTCATCCCCTCAACAGGTTTCTCTCCAAGGTCAAAGTG
TCGGCTTGGTTAGCTGGTGCTGGCTGCAGGCCGGTACAACTTGTCCCATT
TGCTGCCTAGCTCACTTTGCGCCGAAGTCCCTCGTCATCCGTTCCGTTGA
AGTTGTTTAACCCTGCCCAGTGACGTGGCCAGCCCACCGCCTCAATCGAT
TAAGCTAGGAAGAACAGCTCGAACTGGTAGTAAGACTCGTGCATGGAGTC
AACCCCCCAACTCTCTGCTCTGGCATTCAAGTGCCCACAGAATGTGCGCT
TTGGTTTTTTCCGTCGAGTCAGGCGCGCCTTGAAGGAGCAGCAAGACCAG
GCGACGGCCGCGCTGATCCGGGCCCAGGAGGAGAAGGCCGAGGCGAAGAA
TAGAATCATGGCCGAGCGGGAGGTCCGTCGGTTGGTCGTCTGGGTACCCC
CCTCTGTTGTGAATCGAAGTCCGAATCGTCAGAGAGACGTAATGACGAGC
ATGAGGAATATCTGCCATAGATTGGTGCGACGCGGGTCATGCCTCCAAAC
CTTATCGTCGACAGTGGTGGGGACCCAGCCAGTTCGTTCTCAAATCGCTT
GAAGGCTAGCTGCCAAACCGGGTCAGTGCTATTATATTATTATATGTCTT
GAAGCCAGATATTTTACCCTGTGCGTGTCGCTGTCTGTAGTGCCTCGTCG
AAACGTTGTAAACTCTCTGCATATATCTCGGCCTCTATCTCTCTCTGCCT
CTCGCTCTCTTTCTTGATGTCGCATTAGCCACGGTCGTGGTTCCGATCCA
TGTCATGACTGACCGAACGATGTTTCCTCGATTGTATTCTCCTTTCTGGC
GAGTGACCGCTGCTTGGACGTACTTTGTGTTTGCTGATGTTGCGACCACG
ATGATGTCGGGTCAGGCACGGGTGCAAGCCCAGCTAAACGAGAAAAAGGC
GGCAAAGGCGGCCGAGGTGGCGGCTCAGAGGGCGTCTGCCGAGCAACGCA
TTCAGGTTTCTGCTTGTCTGCCTGTCTGTCTGACTGTCTGTCTATCTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCGG
TCGACCTGTCTGTCTGTTTTTCAGTCTCTTTCTGTATGTCTCTCTCTCTC
TTTTCGACTGCGGGAAGCTTGTGTCCGACGCAACGCATCCTGTGCACCAT
GCGAGGTATTGTTCTGCATTGTTAAAGTTTCCGGGACTTCGGCTGAGCTC
TTGCCCAACATTGTTCACGGCATAAGTGCAACTAGAACAACAAGAACGAC
CTGCCAGGTTGCTCACTTCAACCATACGATGCGGTGTACTCTACCGCAGG
AAGTCATGGAGAAGAACAGGAAAATTCAGCAGGACAAGAAGATCGCGTAC
GACCTTAAGGTTGCCGAGGTACGATTGGGCACGCACGAGTGCTTACCACT
GCTGTCGGAAAACTCACGGAGAATAATTGTGACCTGGCCAGAAATAAACT
ACTACTTCCTTCTCTCTACACCTCGATAAATCATGCCGATGCTGATGTTC
AGGGAGTTATTTTTGTGGATCGTTTCCTATTCTCCGGGCTTGCGACGTAA
GTCTGTTCCCCTCCCGTCAACCCTTCCGTTTGTACCGGGTCCCCACCATG
TCCAACGCAGTGTGCCCCAATTCGGTCGTCTAACCCGCGTAAACGTTTGT
TGTCGAGACTGCCTCTCGCGAGAAGCAACAAACGTCAGGCTGCCAACGAG
CAGTGTGCTCTTCTCCCTTCGCGCAGGTGGCTCGCCGCAAGGCGGAGAGG
ATGGAGGGGGAAGAAGCCCAGGCGAAAAAGAGGGCTGAAGAGCAGGCGAA
ACAGGACAGCATCCGCGCCAAGGTGTGGGAGTTTGTGGACGACGAGGGAA
GGGTAGGAACGCTCGACGAACGGGCGGAGCAGCACCGAAGGCATACATTG
ATCGCTAAGGCCTTGTTGTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_581:158109..161279-

>EsuBft1020_5a-0001 ID=EsuBft1020_5a-0001|Name=EsuBft1020_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=756bp|location=Sequence derived from alignment at Scaffold_581:158109..161279- (Ectocarpus subulatus male Bft15b)
ATGCAGAGGCTCGTGGAGAACGAGCAGAGAATGGCCGACCTACACAAGAA
GATACTCAGAGTGGAAGAGGCGGACGCGAAGCGGAGGGCGGAGCACGACC
AGAGGGTGGCGCAGCAGCGGGCGGCGGCGGCGGAAAAGAGGGCCAAGAAG
GAGATGGAGAAGCACGAGAGGGAGAAAGTGGAAGACGAACAAAGGAAGGA
GATGATCAAACGTGCGGCAGAGGCCGAAGCCCGACAACTGAAGATCGAAA
AGGAGCTGGAGGTGCAACGGCTCGCCGAGGCCGCCAAGCGTGAGGAGGAA
CGGCGCGCCTTGAAGGAGCAGCAAGACCAGGCGACGGCCGCGCTGATCCG
GGCCCAGGAGGAGAAGGCCGAGGCGAAGAATAGAATCATGGCCGAGCGGG
AGGCACGGGTGCAAGCCCAGCTAAACGAGAAAAAGGCGGCAAAGGCGGCC
GAGGTGGCGGCTCAGAGGGCGTCTGCCGAGCAACGCATTCAGGAAGTCAT
GGAGAAGAACAGGAAAATTCAGCAGGACAAGAAGATCGCGTACGACCTTA
AGGTTGCCGAGGTGGCTCGCCGCAAGGCGGAGAGGATGGAGGGGGAAGAA
GCCCAGGCGAAAAAGAGGGCTGAAGAGCAGGCGAAACAGGACAGCATCCG
CGCCAAGGTGTGGGAGTTTGTGGACGACGAGGGAAGGGTAGGAACGCTCG
ACGAACGGGCGGAGCAGCACCGAAGGCATACATTGATCGCTAAGGCCTTG
TTGTGA
back to top