EsuBft1005_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1005_7a-0001
Unique NameEsuBft1005_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:207004..209982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1005_7
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length199
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_7aEsuBft1005_7aEctocarpus subulatus male Bft15bgeneScaffold_576 207004..209982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_7a-0001EsuBft1005_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 208272..209891 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_7a-0001-exonEsuBft1005_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 207004..208739 -
EsuBft1005_7a-0001-exonagat-exon-70897Ectocarpus subulatus male Bft15bexonScaffold_576 209133..209209 -
EsuBft1005_7a-0001-exonagat-exon-70896Ectocarpus subulatus male Bft15bexonScaffold_576 209798..209982 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_7a-0001-exonagat-three_prime_utr-44Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 207004..208271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_7a-0001-cdsEsuBft1005_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 208272..208739 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_7a-0001-exonagat-five_prime_utr-23Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_576 209892..209982 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1005_7a-0001 ID=EsuBft1005_7a-0001|Name=EsuBft1005_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1998bp|location=Sequence derived from alignment at Scaffold_576:207004..209982- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGAGCACCAACCGGCAGCGATCTCTTGAGCGCTGCTTACCCTGTCGGAC
TCACACGAGCCTCTCCGTGCAAGACCGTGCAAGACTGCAGGATGGAGGCT
GATTCCTCTGCGGCTTTCGCTGCTGCTCCCCCTCCTGCTGCGGTTAGAGC
AGCAGCAGCTCCTGCTGGATCCTCGGCCGATGAAGGAAAAGACAGCGGCG
CGGTCGTGATGGAATTGAAGGAACGAGACGGAAAGGAAGACGGACCCCGA
AAACTCCGAAGGGCAAGCAACGACGCCCACCGGCAACCGGGGGAGTCTGT
GGCGTCGCATGTGCTCGGCATCACCGACGTGGGGCGGGTGGTCGTAGGCT
TCGCGGGGAAGCAGTTCATGTTTCTTGGCCTTGTTGCCAATGAGGGTGGC
GCTTGGGGAGGAAAGGAACACGAAATGCTCGGAAATCGTATGTTCCGTCC
CGCGCACATTGGAGGCATGCACCACTGGTTGGATGCCAAGTCACCAAGCT
TTGAAGAAGGCTGCTGCCGTAGGCTCACTGGAAGTGCTGATGATTTTCCA
GTTTCTCGGTGTTTGCTGGTGCGAGGGCATGTTTGCAGCCGCTGTTGCAA
ACAAGCAGGACGATCGTGTGTTGGTCTGGTTGATGAAACAGGAGTGCCCC
TTGGACGGTATGGGATTGAAGGCCTTGGAGCTAGCCATAGAAGCAGATTC
GGTGGAGCTCCTCCAGAGATGTTTTCTTGAAGACGTTGATTTTGCGGACA
GGGGTAAGGCGGACGACGTGGCGGGGCCGCGCCTGAAATCTGCGCTGGAG
GGGAGGGAGGCGGAAAAGGTAGGGCCTCTGTCGCGGTTTATGACGGTGCA
ATACCAATGGTTGGACCGACGTTGCGAGGAATTCGCAGGCTCAGGTGACA
TGGTGATGTTGAGAGCCTTGGAGGAGTATGTGTGCGGAGATGACAACACC
TGTCCTGTGCGGCACAATATTACGTGCTGCAGAGGAAGGCCAGTTTGAAG
TGGCGGCGGAGTGTTTGACTTGGTACTGGGAACAATGGGGGTATGAAGGT
GGTAGTCGCATCGTCCCGAATAATGTCCTTTACCACGTGGCGAAGTGCGG
AAGTTTGGGAATGCTGCAGTGGTGCCGCGAGCACTGTGGTGTTGTCAGTG
TAGACTTCTGCGCTGATTGCGTTGACGTCGAGGGGTGGGAGCGTGTCGTG
CAACATGCTGCGGGGGCTGGGCACGTGGGCATGGTCGTGTGGTGCCTCGA
GAACGGGTGGGAATACACTGACGACATGCTGCAAGAGGCTGCTAATAAAG
GACGTTGGCATGTTGTGAAGGTGTTGGAGGACAGGGTGTTGGAGGAGAGG
GGGTTCGTCGTGAAGGTTGTGGGAGGCGCTCAAGTGAACGACGAGCGAGA
CGTATTTTGGGAGAATCTACCTGTTTGTGACTGCTGGTGAGCGAAATGTC
TTTGGGTTCGGGAGGGGGTTGGCACGGCGTGCGTTGTTCCGGTGGCGGTG
CTTGTGCTTCGCTGTTGCTGTCGGAAGGCGGACGAGAAAAAGGTCGAACT
CGCAGGGGGTCATTGGGCCTAGTGGGGACAGTCGGTTGGTTGGGGTGACT
GTCCATGACGTTTGTATTTAGTTGTTTTAGTTTCGCACGCTAGCTCTAAA
CTACAGTTTCAAAACAATCCGTGGGAGCCGAAAAGACATGAAGCACAAAC
ATGGTCGGTACACACGCGGTCCTACGCTGCCCCCGGGAGCGGGAGGGTGC
TTGCTTGTGGTACTTGCGTCTCGCCGACGCCTGCAAGAAAAAAACTACGT
TACACAACCGGTAGATACGAGGGTTCCGCCCCATGAGTACGCTCTTCCCC
CCTTATCCCTCACAGCCGGGTGTGGGGTTCGAAGCGAGCCGTCCTGCCCA
AATGGTGATCTGATCTCTATCGTAAGCGAAAAAATCCGACTACAGGTTCT
CTGTACCCGTACCACCCACGAAAAAACCGCGAACGGTCGCAACGCCTA
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protein sequence of EsuBft1005_7a-0001

>EsuBft1005_7 ID=EsuBft1005_7|Name=EsuBft1005_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=212bp
MEADSSAAFAAAPPPAAVRAAAAPAGSSADEGKDSGAVVMELKERDGKED
GPRKLRRASNDAHRQPGESVASHVLGITDVGRVVVGFAGKQFMFLGLVAN
EGGAWGGKEHEMLGNRMFRPAHIGGMHHWLDAKSPSFEEGCCRRLTGSAD
DFPVSRCLLVRGHVCSRCCKQAGRSCVGLVDETGVPLGRYGIEGLGASHR
SRFGGAPPEMFS
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mRNA from alignment at Scaffold_576:207004..209982-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1005_7a-0001 ID=EsuBft1005_7a-0001|Name=EsuBft1005_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2979bp|location=Sequence derived from alignment at Scaffold_576:207004..209982- (Ectocarpus subulatus male Bft15b)
CAGAGCACCAACCGGCAGCGATCTCTTGAGCGCTGCTTACCCTGTCGGAC
TCACACGAGCCTCTCCGTGCAAGACCGTGCAAGACTGCAGGATGGAGGCT
GATTCCTCTGCGGCTTTCGCTGCTGCTCCCCCTCCTGCTGCGGTTAGAGC
AGCAGCAGCTCCTGCTGGATCCTCGGCCGATGAAGGTACACACATAGTCT
ACATATCATTGATAATGCAGCACCGCCGTAGCGGTGGCCGTAAGGTGTGA
CACTTAAGGTGTGAGGCTGCACGAGACTTAGTCTTGAAGCGTGGGGCGTG
GAGGTGTCCTTGTTGTGTTGTTTTCTGTGCGCTTTGTGTTGTTTCTGTGC
GCTTTGTTCTCGAGTGCGCGTGAGTTCTCCGTCAATTTTTAAAAATGACC
TGTGGCAGAGTTTTGCAGGAGTTGTCTCTCACCTCTCACACCTCAACACA
CCTCGTAGAACTTTTCATCCACCACCTTGGGCTTTTCCTCTCTCGTGGCG
AGGTTTCTCTCTTAGATTTCTCTTAGATTTCTCTTAGATTGTACGTGTCT
TTCAAAATCCTTGTCCACAAAGGAAGCCCACAGCAGCAGCAGCAGCAGCA
GCGGTCGCCGCCGTCTTGTTGAACGTCCTAACGTACACGCCGGCTGCCAT
TTTATCTTCATGTGAAATCAATTATATGCTGCACTCCCTCACCTCTTCCT
CTCCCCCCTACTATTGCTCGCAAAAATCACGATCTTCGCAAATGCTCCCT
CCTGGGTACGTCTGTGCCGGTAGGAAAAGACAGCGGCGCGGTCGTGATGG
AATTGAAGGAACGAGACGGAAAGGAAGACGGACCCCGAAAACTCCGAAGG
GTGAGAACTTGCATTATGAGTTAGCTGGAACAGCAGTTTGTCGGATGCAA
CACTGCGCCATACGTGTTTGATAACATACATATGTACGAACGCGAAAGTA
GAACCAACCGTGTACCTCCCGTGCCATCATACCACTAGCTATGTGTGAGG
CGTTGTGTGGCTGCGTAAATGGGGGCATGCACAAAGACGTGTGGAACACA
TTCGGGAGTGCGCCGTATTTTCCCGCTCGCTATGCTGTAAGAGTGATGAA
GTCATGGAGAGAACACCCGTTGGAGAACAAGGCGGTCTATATTTATATTT
CCCAAAACACCACAGCAGCAAAACAGATCTGTCCCCCTGAGCACGTTGAT
CAGTGCCGCAGCGCTTCGTGTTTGCGCTGTGAACTTTTTGCAGGCAAGCA
ACGACGCCCACCGGCAACCGGGGGAGTCTGTGGCGTCGCATGTGCTCGGC
ATCACCGACGTGGGGCGGGTGGTCGTAGGCTTCGCGGGGAAGCAGTTCAT
GTTTCTTGGCCTTGTTGCCAATGAGGGTGGCGCTTGGGGAGGAAAGGAAC
ACGAAATGCTCGGAAATCGTATGTTCCGTCCCGCGCACATTGGAGGCATG
CACCACTGGTTGGATGCCAAGTCACCAAGCTTTGAAGAAGGCTGCTGCCG
TAGGCTCACTGGAAGTGCTGATGATTTTCCAGTTTCTCGGTGTTTGCTGG
TGCGAGGGCATGTTTGCAGCCGCTGTTGCAAACAAGCAGGACGATCGTGT
GTTGGTCTGGTTGATGAAACAGGAGTGCCCCTTGGACGGTATGGGATTGA
AGGCCTTGGAGCTAGCCATAGAAGCAGATTCGGTGGAGCTCCTCCAGAGA
TGTTTTCTTGAAGACGTTGATTTTGCGGACAGGGGTAAGGCGGACGACGT
GGCGGGGCCGCGCCTGAAATCTGCGCTGGAGGGGAGGGAGGCGGAAAAGG
TAGGGCCTCTGTCGCGGTTTATGACGGTGCAATACCAATGGTTGGACCGA
CGTTGCGAGGAATTCGCAGGCTCAGGTGACATGGTGATGTTGAGAGCCTT
GGAGGAGTATGTGTGCGGAGATGACAACACCTGTCCTGTGCGGCACAATA
TTACGTGCTGCAGAGGAAGGCCAGTTTGAAGTGGCGGCGGAGTGTTTGAC
TTGGTACTGGGAACAATGGGGGTATGAAGGTGGTAGTCGCATCGTCCCGA
ATAATGTCCTTTACCACGTGGCGAAGTGCGGAAGTTTGGGAATGCTGCAG
TGGTGCCGCGAGCACTGTGGTGTTGTCAGTGTAGACTTCTGCGCTGATTG
CGTTGACGTCGAGGGGTGGGAGCGTGTCGTGCAACATGCTGCGGGGGCTG
GGCACGTGGGCATGGTCGTGTGGTGCCTCGAGAACGGGTGGGAATACACT
GACGACATGCTGCAAGAGGCTGCTAATAAAGGACGTTGGCATGTTGTGAA
GGTGTTGGAGGACAGGGTGTTGGAGGAGAGGGGGTTCGTCGTGAAGGTTG
TGGGAGGCGCTCAAGTGAACGACGAGCGAGACGTATTTTGGGAGAATCTA
CCTGTTTGTGACTGCTGGTGAGCGAAATGTCTTTGGGTTCGGGAGGGGGT
TGGCACGGCGTGCGTTGTTCCGGTGGCGGTGCTTGTGCTTCGCTGTTGCT
GTCGGAAGGCGGACGAGAAAAAGGTCGAACTCGCAGGGGGTCATTGGGCC
TAGTGGGGACAGTCGGTTGGTTGGGGTGACTGTCCATGACGTTTGTATTT
AGTTGTTTTAGTTTCGCACGCTAGCTCTAAACTACAGTTTCAAAACAATC
CGTGGGAGCCGAAAAGACATGAAGCACAAACATGGTCGGTACACACGCGG
TCCTACGCTGCCCCCGGGAGCGGGAGGGTGCTTGCTTGTGGTACTTGCGT
CTCGCCGACGCCTGCAAGAAAAAAACTACGTTACACAACCGGTAGATACG
AGGGTTCCGCCCCATGAGTACGCTCTTCCCCCCTTATCCCTCACAGCCGG
GTGTGGGGTTCGAAGCGAGCCGTCCTGCCCAAATGGTGATCTGATCTCTA
TCGTAAGCGAAAAAATCCGACTACAGGTTCTCTGTACCCGTACCACCCAC
GAAAAAACCGCGAACGGTCGCAACGCCTA
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Coding sequence (CDS) from alignment at Scaffold_576:207004..209982-

>EsuBft1005_7a-0001 ID=EsuBft1005_7a-0001|Name=EsuBft1005_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=639bp|location=Sequence derived from alignment at Scaffold_576:207004..209982- (Ectocarpus subulatus male Bft15b)
ATGGAGGCTGATTCCTCTGCGGCTTTCGCTGCTGCTCCCCCTCCTGCTGC
GGTTAGAGCAGCAGCAGCTCCTGCTGGATCCTCGGCCGATGAAGGAAAAG
ACAGCGGCGCGGTCGTGATGGAATTGAAGGAACGAGACGGAAAGGAAGAC
GGACCCCGAAAACTCCGAAGGGCAAGCAACGACGCCCACCGGCAACCGGG
GGAGTCTGTGGCGTCGCATGTGCTCGGCATCACCGACGTGGGGCGGGTGG
TCGTAGGCTTCGCGGGGAAGCAGTTCATGTTTCTTGGCCTTGTTGCCAAT
GAGGGTGGCGCTTGGGGAGGAAAGGAACACGAAATGCTCGGAAATCGTAT
GTTCCGTCCCGCGCACATTGGAGGCATGCACCACTGGTTGGATGCCAAGT
CACCAAGCTTTGAAGAAGGCTGCTGCCGTAGGCTCACTGGAAGTGCTGAT
GATTTTCCAGTTTCTCGGTGTTTGCTGGTGCGAGGGCATGTTTGCAGCCG
CTGTTGCAAACAAGCAGGACGATCGTGTGTTGGTCTGGTTGATGAAACAG
GAGTGCCCCTTGGACGGTATGGGATTGAAGGCCTTGGAGCTAGCCATAGA
AGCAGATTCGGTGGAGCTCCTCCAGAGATGTTTTCTTGA
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