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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 164328.Phyra85518 |
| ProteomeId | EsuBft1059_8 |
| Protein domains | IPR013103 |
| Protein domains | SSF56672 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 4776|Peronosporales |
| Length | 2709 |
| Hectar predicted targeting category | other localisation |
| Evalue | 7.48e-66 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | GAG-pre-integrase domain |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0044424 |
| GO | 0090304 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1059_8a-0001 ID=EsuBft1059_8a-0001|Name=EsuBft1059_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2709bp|location=Sequence derived from alignment at Scaffold_565:654088..657091- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCAAGTGCCCACCGCTGCAGGCTGCTCTTGGGATGATGACCCCCTGAC GTCCCCGCTGCCCGGTCCTACGCCCGGGTCCACTCCACGAAGGATGTTTG GCACTACCAGGCTGGCTCCCGGTCTGGTGCTTCTTCCCTCGTGCTGTGCG GGCGGCGTGATTCCGTCGTTGTGCAGCCCCTCTTCCAGCAGACCGCGGGC AGACGTAGTGCCCGTGACGACAGCGCCCAACCCAGTGCCGCCGGACTCCC CCTCCTTCTTCAACTTTCCGAGGGCGGCTTGGAGAAGCCCTGGCAGCTGC TGTACCTCGTCCGTCAGGCCTGGAACTTTGCTCTCCAGGTTGTCAACTCT GCCCTGCGTACTAGTGGTGACGTCGGCAGTCCCTGCTGCAACATCGGCGC CACTCATCTCCAGCACGGGTTCCCTCGAGGGATACACTCTAGAGAAGCAA TCGCCGTACGAGATGTGGCACGGGCACCCTCCCCCGCCGGGGGCGATGTA CCCGTTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACACACAAGTCCG ATCCGAAAGCCCAAAAGTGTTTTTACCTTGGCCCGGGAATCAACACCAAC CGTGATTGCGTGCGCATCATTAACGATAAACGCCAAGCGATCACAACTCG CAACTTCACCTGGCAATCCGTACCCACCGCCCCCGCCGCCCTGCCCCAGT CGCTGCCTCCCATCGCAGAGGAGGAAGAGGAATTCGCGACTGAGGAGGAC GAGGTTGGGGAGGGCGCGTCGAGCCAAGGTGGAGGGAGGGCGGAGGGAGA ACCTGTGGATGGAGGACCAGGTTTCAACCTTGGCACGACGGCAGCCCCGG GGCCCGCGGGGCCGGCCGCGCGCGTAGCGCCGGTGGCACCGCCGGCCGCG CCCCAGGAGTCGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAG GGAGAGCGCGAGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATG TGGGCGGCGGCGAGGACGACCGCCGCAGCAGCGGTAGCGGCGGCAGCGGC GGCGACAGCAGCGGCCGCGGTAGCTGCGGCAGCGGCAGCGACAGCAGCAG CGGCGGCAGCGGCGATGACGGCGGCAGCGACAGCGGCAGTGGCAGCGACA GCGAGACTGATCTCCCGGCGCTCCGTGGGCCAGAGGCCCGGCGGCTCGCC CGCTTCATCAAGCCGGCGGAACTCACCAGCCGTCGCACTAAGGAGAACCC TCGCCGAAACCCTAGGGCTAGAGGCAAGGGCGGTGCGAGGTTGCTGTTCG AGCGCGCGGAGGAGGCCCACGCTGCGCGCCAAGAGGCGGAGGATTTCCTG CTGGGTACGGTGGACCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGC TCTGGCGTCCCACGAGCAATGTGAATCCCCCATTGGCCTGCGTCCGAGTG ATGCCGTGATGGAAGAGTTTGAAGGGCACTTGGGCACGGGGACGTTTTCA TTCGTAGACGGTGCGCCAGAGGGGCGCAGGCCTGTGAGCTCAAAGTGGTG TTTTAGTTGGAAGACCAACAAGGAAGGGAAGATAGACACGTTCAAAGCGC GTCTGGTTGCTAGGGGGTTTCCGCAAATCCCGAACGTCGATTATTTCCAT TCGTCTTCCGCTTGTCCATCATCCGCATCCAATAAACTAATGCTTGCGGT AGCAAACGAGAAGGGCGTGAACTTCAATCACTCGGATGTGAAGCAGGCGT ACACACACGCCACGCTAGACGAGGAGGTTTTTCTGAAGCGTCCCGCTGGG TGCGGGGAAAAATTGCGAAAGATTGCTAAGGCTGAGCGTGCGATTTATGG TCTGAAGCAGAGCGGTAGGCAGTGGGGGTACCACGCTGCTGATACGCTAG TCGAGAACGGGTTCGAGCAGTGCAAGGCGGACCCGTGTGTTTTCCGCAAG ATGGTAGACGAAGTCGTGGTGATGATTATCGTGATTTACGTGGATGACAT TTTGGTGGCTGGGTCTGACGAGGATTGCGAGGAGTTGCTTGCTTCTCTCA ACAAGAAGTTCCCCACCAGAAATGTGGGAGAATGCGAATGGTTTGACGGG TGTGCCATCGAGAGAGATGTAGAGGCTGGGAATCTTAAAATCTCGCAAAC CGCGTATATCGACAGCATGGTGAAACGCTTTGATGTACAATCGACCTCCC GCATCCCTGCTTCCCCTGGTGTTGACCTAGGACCGAAGCGGGATAACGAG AACGGAGGGGAGTGGCCGGTGAGGGAGGCCATCGGCAGCATGATGTGGGT GTCGACTTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGC GCCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCCATACAGAAGATC CTCGGCTACCTGAAAGGGACGAGGGACCTCAGCATCACCTACCAACGGGG ATCGGGGTTAGGGCTGGCCGTAGCATCTTCGACGGAAGCCGAGTACATTG CTGCCGGGGAGGGCGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCTTTTG TTTGTTGCCCCAGAGACGAGTGGTAGCAGCATCCAGGTCCTTGAGGACAG CCAGGGGGCCATCGCGTTGGTGCAGAACCCCCTCAGCTCAGGTCGCACGA AACACATCGACGTGAGATTCCATTTCATCCGCGGATTGTTTAGGTCGGGG GATATTTAG back to topprotein sequence of EsuBft1059_8a-0001 >EsuBft1059_8 ID=EsuBft1059_8|Name=EsuBft1059_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=902bp
MQVPTAAGCSWDDDPLTSPLPGPTPGSTPRRMFGTTRLAPGLVLLPSCCA GGVIPSLCSPSSSRPRADVVPVTTAPNPVPPDSPSFFNFPRAAWRSPGSC CTSSVRPGTLLSRLSTLPCVLVVTSAVPAATSAPLISSTGSLEGYTLEKQ SPYEMWHGHPPPPGAMYPFLKPAVYKVKRTHKSDPKAQKCFYLGPGINTN RDCVRIINDKRQAITTRNFTWQSVPTAPAALPQSLPPIAEEEEEFATEED EVGEGASSQGGGRAEGEPVDGGPGFNLGTTAAPGPAGPAARVAPVAPPAA PQESGAGDAGDGAPSSRESASVAPSTTSTGTADVGGGEDDRRSSGSGGSG GDSSGRGSCGSGSDSSSGGSGDDGGSDSGSGSDSETDLPALRGPEARRLA RFIKPAELTSRRTKENPRRNPRARGKGGARLLFERAEEAHAARQEAEDFL LGTVDLMLNSPDAFETALASHEQCESPIGLRPSDAVMEEFEGHLGTGTFS FVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFPQIPNVDYFH SSSACPSSASNKLMLAVANEKGVNFNHSDVKQAYTHATLDEEVFLKRPAG CGEKLRKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRK MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDG CAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNE NGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKI LGYLKGTRDLSITYQRGSGLGLAVASSTEAEYIAAGEGVKEALFVRAVLL FVAPETSGSSIQVLEDSQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSG DI back to topmRNA from alignment at Scaffold_565:654088..657091- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1059_8a-0001 ID=EsuBft1059_8a-0001|Name=EsuBft1059_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3004bp|location=Sequence derived from alignment at Scaffold_565:654088..657091- (Ectocarpus subulatus male Bft15b) ATGCAAGTGCCCACCGCTGCAGGCTGCTCTTGGGATGATGACCCCCTGAC
GTCCCCGCTGCCCGGTCCTACGCCCGGGTCCACTCCACGAAGGATGTTTG
GCACTACCAGGCTGGCTCCCGGTCTGGTGCTTCTTCCCTCGTGCTGTGCG
GGCGGCGTGATTCCGTCGTTGTGCAGCCCCTCTTCCAGCAGACCGCGGGC
AGACGTAGTGCCCGTGACGACAGCGCCCAACCCAGTGCCGCCGGACTCCC
CCTCCTTCTTCAACTTTCCGAGGGCGGCTTGGAGAAGCCCTGGCAGCTGC
TGTACCTCGTCCGTCAGGCCTGGAACTTTGCTCTCCAGGTTGTCAACTCT
GCCCTGCGTACTAGTGGTGACGTCGGCAGTCCCTGCTGCAACATCGGCGC
CACTCATCTCCAGCACGGGTTCCCTCGAGGGATACACTCTAGAGAAGCAA
TCGCCGTACGAGATGTGGCACGGGCACCCTCCCCCGCCGGGGGCGATGTA
CCCGTTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACACACAAGTCCG
ATCCGAAAGCCCAAAAGTGTTTTTACCTTGGCCCGGGAATCAACACCAAC
CGTGATTGCGTGCGCATCATTAACGATAAACGCCAAGCGATCACAACTCG
CAACTTCACCTGGCAATCCGTACCCACCGCCCCCGCCGCCCTGCCCCAGT
CGCTGCCTCCCATCGCAGAGGAGGAAGAGGAATTCGCGACTGAGGAGGAC
GAGGTTGGGGAGGGCGCGTCGAGCCAAGGTGGAGGGAGGGCGGAGGGAGA
ACCTGTGGATGGAGGACCAGGTTTCAACCTTGGCACGACGGCAGCCCCGG
GGCCCGCGGGGCCGGCCGCGCGCGTAGCGCCGGTGGCACCGCCGGCCGCG
CCCCAGGAGTCGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAG
GGAGAGCGCGAGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATG
TGGGCGGCGGCGAGGACGACCGCCGCAGCAGCGGTAGCGGCGGCAGCGGC
GGCGACAGCAGCGGCCGCGGTAGCTGCGGCAGCGGCAGCGACAGCAGCAG
CGGCGGCAGCGGCGATGACGGCGGCAGCGACAGCGGCAGTGGCAGCGACA
GCGAGACTGATCTCCCGGCGCTCCGTGGGCCAGAGGCCCGGCGGCTCGCC
CGCTTCATCAAGCCGGCGGAACTCACCAGCCGTCGCACTAAGGAGAACCC
TCGCCGAAACCCTAGGTACGAGTCGCCCCCGTCGCCGACATGTGCCGAAA
CCCTGCTCGCCTCGGCGGCGAGCCTGCCCGTCAGCAGTACGGAGAAGTTC
ACCCACTGGATGCTCTAGGCGGTACTTCACGTGGTGGAAGGGCTAGAGGC
AAGGGCGGTGCGAGGTTGCTGTTCGAGCGCGCGGAGGAGGCCCACGCTGC
GCGCCAAGAGGCGGAGGATTTCCTGCTGGGTACGGTGGACCTCATGCTCA
ACTCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCCACGAGCAATGTGAA
TCCCCCATTGGCCTGCGTCCGAGTGATGTAGAACCCCCCCTCATGACCGT
AGCCGGCGTTGCTAAGTCTTGTGTACAGAGAGGGGTGGGAACAGGCCGTG
ATGGAAGAGTTTGAAGGGCACTTGGGCACGGGGACGTTTTCATTCGTAGA
CGGTGCGCCAGAGGGGCGCAGGCCTGTGAGCTCAAAGTGGTGTTTTAGTT
GGAAGACCAACAAGGAAGGGAAGATAGACACGTTCAAAGCGCGTCTGGTT
GCTAGGGGGTTTCCGCAAATCCCGAACGTCGATTATTTCCATTCGTCTTC
CGCTTGTCCATCATCCGCATCCAATAAACTAATGCTTGCGGTAGCAAACG
AGAAGGGCGTGAACTTCAATCACTCGGATGTGAAGCAGGCGTACACACAC
GCCACGCTAGACGAGGAGGTTTTTCTGAAGCGTCCCGCTGGGTGCGGGGA
AAAATTGCGAAAGATTGCTAAGGCTGAGCGTGCGATTTATGGTCTGAAGC
AGAGCGGTAGGCAGTGGGGGTACCACGCTGCTGATACGCTAGTCGAGAAC
GGGTTCGAGCAGTGCAAGGCGGACCCGTGTGTTTTCCGCAAGATGGTAGA
CGAAGTCGTGGTGATGATTATCGTGATTTACGTGGATGACATTTTGGTGG
CTGGGTCTGACGAGGATTGCGAGGAGTTGCTTGCTTCTCTCAACAAGAAG
TTCCCCACCAGAAATGTGGGAGAATGCGAATGGTTTGACGGGTGTGCCAT
CGAGAGAGATGTAGAGGCTGGGAATCTTAAAATCTCGCAAACCGCGTATA
TCGACAGCATGGTGAAACGCTTTGATGTACAATCGACCTCCCGCATCCCT
GCTTCCCCTGGTGTTGACCTAGGACCGAAGCGGGATAACGAGAACGGAGG
GGAGTGGCCGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCGACTT
TCTCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGCCACGCC
CACGCCCCGGCGAAGCGGCACTGGGATGCCATACAGAAGATCCTCGGCTA
CCTGAAAGGGACGAGGGACCTCAGCATCACCTACCAACGGGGATCGGGGT
TAGGGCTGGCCGTGTACGTAGACGCTAGCTACGCCGACACGGAGGATAAG
CGTTCGGTGTCAGCGTTGGCGACGACGGTTGGAGGTACCGTAGTCAGCCA
TGGTAGCAAGACACAGAGCATCTTCGACGGAAGCCGAGTACATTGCTGCC
GGGGAGGGCGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCTTTTGTTTGT
TGCCCCAGAGACGAGTGGTAGCAGCATCCAGGTCCTTGAGGACAGCCAGG
GGGCCATCGCGTTGGTGCAGAACCCCCTCAGCTCAGGTCGCACGAAACAC
ATCGACGTGAGATTCCATTTCATCCGCGGATTGTTTAGGTCGGGGGATAT
TTAG back to topCoding sequence (CDS) from alignment at Scaffold_565:654088..657091- >EsuBft1059_8a-0001 ID=EsuBft1059_8a-0001|Name=EsuBft1059_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2709bp|location=Sequence derived from alignment at Scaffold_565:654088..657091- (Ectocarpus subulatus male Bft15b) ATGCAAGTGCCCACCGCTGCAGGCTGCTCTTGGGATGATGACCCCCTGAC GTCCCCGCTGCCCGGTCCTACGCCCGGGTCCACTCCACGAAGGATGTTTG GCACTACCAGGCTGGCTCCCGGTCTGGTGCTTCTTCCCTCGTGCTGTGCG GGCGGCGTGATTCCGTCGTTGTGCAGCCCCTCTTCCAGCAGACCGCGGGC AGACGTAGTGCCCGTGACGACAGCGCCCAACCCAGTGCCGCCGGACTCCC CCTCCTTCTTCAACTTTCCGAGGGCGGCTTGGAGAAGCCCTGGCAGCTGC TGTACCTCGTCCGTCAGGCCTGGAACTTTGCTCTCCAGGTTGTCAACTCT GCCCTGCGTACTAGTGGTGACGTCGGCAGTCCCTGCTGCAACATCGGCGC CACTCATCTCCAGCACGGGTTCCCTCGAGGGATACACTCTAGAGAAGCAA TCGCCGTACGAGATGTGGCACGGGCACCCTCCCCCGCCGGGGGCGATGTA CCCGTTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACACACAAGTCCG ATCCGAAAGCCCAAAAGTGTTTTTACCTTGGCCCGGGAATCAACACCAAC CGTGATTGCGTGCGCATCATTAACGATAAACGCCAAGCGATCACAACTCG CAACTTCACCTGGCAATCCGTACCCACCGCCCCCGCCGCCCTGCCCCAGT CGCTGCCTCCCATCGCAGAGGAGGAAGAGGAATTCGCGACTGAGGAGGAC GAGGTTGGGGAGGGCGCGTCGAGCCAAGGTGGAGGGAGGGCGGAGGGAGA ACCTGTGGATGGAGGACCAGGTTTCAACCTTGGCACGACGGCAGCCCCGG GGCCCGCGGGGCCGGCCGCGCGCGTAGCGCCGGTGGCACCGCCGGCCGCG CCCCAGGAGTCGGGCGCGGGCGACGCTGGCGATGGCGCCCCCTCGAGCAG GGAGAGCGCGAGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATG TGGGCGGCGGCGAGGACGACCGCCGCAGCAGCGGTAGCGGCGGCAGCGGC GGCGACAGCAGCGGCCGCGGTAGCTGCGGCAGCGGCAGCGACAGCAGCAG CGGCGGCAGCGGCGATGACGGCGGCAGCGACAGCGGCAGTGGCAGCGACA GCGAGACTGATCTCCCGGCGCTCCGTGGGCCAGAGGCCCGGCGGCTCGCC CGCTTCATCAAGCCGGCGGAACTCACCAGCCGTCGCACTAAGGAGAACCC TCGCCGAAACCCTAGGGCTAGAGGCAAGGGCGGTGCGAGGTTGCTGTTCG AGCGCGCGGAGGAGGCCCACGCTGCGCGCCAAGAGGCGGAGGATTTCCTG CTGGGTACGGTGGACCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGC TCTGGCGTCCCACGAGCAATGTGAATCCCCCATTGGCCTGCGTCCGAGTG ATGCCGTGATGGAAGAGTTTGAAGGGCACTTGGGCACGGGGACGTTTTCA TTCGTAGACGGTGCGCCAGAGGGGCGCAGGCCTGTGAGCTCAAAGTGGTG TTTTAGTTGGAAGACCAACAAGGAAGGGAAGATAGACACGTTCAAAGCGC GTCTGGTTGCTAGGGGGTTTCCGCAAATCCCGAACGTCGATTATTTCCAT TCGTCTTCCGCTTGTCCATCATCCGCATCCAATAAACTAATGCTTGCGGT AGCAAACGAGAAGGGCGTGAACTTCAATCACTCGGATGTGAAGCAGGCGT ACACACACGCCACGCTAGACGAGGAGGTTTTTCTGAAGCGTCCCGCTGGG TGCGGGGAAAAATTGCGAAAGATTGCTAAGGCTGAGCGTGCGATTTATGG TCTGAAGCAGAGCGGTAGGCAGTGGGGGTACCACGCTGCTGATACGCTAG TCGAGAACGGGTTCGAGCAGTGCAAGGCGGACCCGTGTGTTTTCCGCAAG ATGGTAGACGAAGTCGTGGTGATGATTATCGTGATTTACGTGGATGACAT TTTGGTGGCTGGGTCTGACGAGGATTGCGAGGAGTTGCTTGCTTCTCTCA ACAAGAAGTTCCCCACCAGAAATGTGGGAGAATGCGAATGGTTTGACGGG TGTGCCATCGAGAGAGATGTAGAGGCTGGGAATCTTAAAATCTCGCAAAC CGCGTATATCGACAGCATGGTGAAACGCTTTGATGTACAATCGACCTCCC GCATCCCTGCTTCCCCTGGTGTTGACCTAGGACCGAAGCGGGATAACGAG AACGGAGGGGAGTGGCCGGTGAGGGAGGCCATCGGCAGCATGATGTGGGT GTCGACTTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGC GCCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCCATACAGAAGATC CTCGGCTACCTGAAAGGGACGAGGGACCTCAGCATCACCTACCAACGGGG ATCGGGGTTAGGGCTGGCCGTAGCATCTTCGACGGAAGCCGAGTACATTG CTGCCGGGGAGGGCGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCTTTTG TTTGTTGCCCCAGAGACGAGTGGTAGCAGCATCCAGGTCCTTGAGGACAG CCAGGGGGCCATCGCGTTGGTGCAGAACCCCCTCAGCTCAGGTCGCACGA AACACATCGACGTGAGATTCCATTTCATCCGCGGATTGTTTAGGTCGGGG GATATTTAG back to top
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