EsuBft1012_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1012_3a-0001
Unique NameEsuBft1012_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_561contigScaffold_561:12531..13421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1012_3
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length89
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_3aEsuBft1012_3aEctocarpus subulatus male Bft15bgeneScaffold_561 12531..13421 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_3a-0001-exonEsuBft1012_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_561 12531..13421 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_3a-0001-exonagat-five_prime_utr-77Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_561 12531..12756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_3a-0001-cdsEsuBft1012_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_561 12757..13017 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_3a-0001-exonagat-three_prime_utr-129Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_561 13018..13421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_3a-0001EsuBft1012_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_561 12757..13017 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1012_3a-0001 ID=EsuBft1012_3a-0001|Name=EsuBft1012_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=891bp|location=Sequence derived from alignment at Scaffold_561:12531..13421+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGCGTGAAGCGGCTTTTGTTAAATCTGCCAGCGATAAAATCGCACGG
TTCGTCCACTTCTTTCGCCCTTCTACGCCCGTCTGCGGGGTCAGACTTAA
CTGCCCGACTTAAACGACACCACTTTCGGTTTGCTGGAGTTCAAGCCCGC
GCCCTTCGACTGGGAACGGGGGGGTTTGTCGCCCCCTCCGCCCCTGCCTG
AGTCGCGACCGCGGTGCACACTTGAGATGTGCTTGGTGGTCTCCTCAAGG
TCGTCGAGACGCCTTTCCAGGCGCACTGTGGCGTTTTCGAGCTGCGGTTC
GTGGGAGATATGGTACATCGAGGACACCGACGTGGAAGATGAGGGGGAAG
CAGAGCGCAGTTTGTTCGCTTCGTGTTTGCGTGCACGGGCTTTCGATGCC
ATAAACGACTGCGATGCATCCTCCCTGGTCATCTCCACCCGGATTTCAGG
TTTCAACCCGTTCTCAAACGATGCAATGAGCGCCTGATCAAAAGCGTGTT
CATGCGCGTTTGTGTTCAGCGGAGCTGTGCGTTCGGCTTCCGCCAGGAGT
CGTGAGTATGATTGCGACACCCTGAGAGCTTACTCGTCAACGGATTCCTC
AGCTTTTTTTGCTTGGAGGGTCATGACGTCTCTGGCAAGTAGCGAGATTC
TGTTGGCGGGTGCAAACGGGCATTCTTTCGAAACTTGAGAACCCGGTAGC
AGTGGCGGCACGTCCGCGAGGGAAGGCAGGGATAGAGCGAAGTTGAGGGA
GTAGTCTTTGGTTAGTCGCCGCACTGCGTTGCATTCTGTAGCGTTTTGGC
TTGTGCTCATGTCCGTGAAAGCGTAATGCAAATGTTTCGTGCCGGTCTTT
TTGCAGCTTGGTGGTCTTTTTGCAGCTTGGTGGACAGCAAA
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protein sequence of EsuBft1012_3a-0001

>EsuBft1012_3 ID=EsuBft1012_3|Name=EsuBft1012_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=86bp
MCLVVSSRSSRRLSRRTVAFSSCGSWEIWYIEDTDVEDEGEAERSLFASC
LRARAFDAINDCDASSLVISTRISGFNPFSNDAMSA
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mRNA from alignment at Scaffold_561:12531..13421+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1012_3a-0001 ID=EsuBft1012_3a-0001|Name=EsuBft1012_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=891bp|location=Sequence derived from alignment at Scaffold_561:12531..13421+ (Ectocarpus subulatus male Bft15b)
GTGTGCGTGAAGCGGCTTTTGTTAAATCTGCCAGCGATAAAATCGCACGG
TTCGTCCACTTCTTTCGCCCTTCTACGCCCGTCTGCGGGGTCAGACTTAA
CTGCCCGACTTAAACGACACCACTTTCGGTTTGCTGGAGTTCAAGCCCGC
GCCCTTCGACTGGGAACGGGGGGGTTTGTCGCCCCCTCCGCCCCTGCCTG
AGTCGCGACCGCGGTGCACACTTGAGATGTGCTTGGTGGTCTCCTCAAGG
TCGTCGAGACGCCTTTCCAGGCGCACTGTGGCGTTTTCGAGCTGCGGTTC
GTGGGAGATATGGTACATCGAGGACACCGACGTGGAAGATGAGGGGGAAG
CAGAGCGCAGTTTGTTCGCTTCGTGTTTGCGTGCACGGGCTTTCGATGCC
ATAAACGACTGCGATGCATCCTCCCTGGTCATCTCCACCCGGATTTCAGG
TTTCAACCCGTTCTCAAACGATGCAATGAGCGCCTGATCAAAAGCGTGTT
CATGCGCGTTTGTGTTCAGCGGAGCTGTGCGTTCGGCTTCCGCCAGGAGT
CGTGAGTATGATTGCGACACCCTGAGAGCTTACTCGTCAACGGATTCCTC
AGCTTTTTTTGCTTGGAGGGTCATGACGTCTCTGGCAAGTAGCGAGATTC
TGTTGGCGGGTGCAAACGGGCATTCTTTCGAAACTTGAGAACCCGGTAGC
AGTGGCGGCACGTCCGCGAGGGAAGGCAGGGATAGAGCGAAGTTGAGGGA
GTAGTCTTTGGTTAGTCGCCGCACTGCGTTGCATTCTGTAGCGTTTTGGC
TTGTGCTCATGTCCGTGAAAGCGTAATGCAAATGTTTCGTGCCGGTCTTT
TTGCAGCTTGGTGGTCTTTTTGCAGCTTGGTGGACAGCAAA
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Coding sequence (CDS) from alignment at Scaffold_561:12531..13421+

>EsuBft1012_3a-0001 ID=EsuBft1012_3a-0001|Name=EsuBft1012_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=261bp|location=Sequence derived from alignment at Scaffold_561:12531..13421+ (Ectocarpus subulatus male Bft15b)
ATGTGCTTGGTGGTCTCCTCAAGGTCGTCGAGACGCCTTTCCAGGCGCAC
TGTGGCGTTTTCGAGCTGCGGTTCGTGGGAGATATGGTACATCGAGGACA
CCGACGTGGAAGATGAGGGGGAAGCAGAGCGCAGTTTGTTCGCTTCGTGT
TTGCGTGCACGGGCTTTCGATGCCATAAACGACTGCGATGCATCCTCCCT
GGTCATCTCCACCCGGATTTCAGGTTTCAACCCGTTCTCAAACGATGCAA
TGAGCGCCTGA
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