EsuBft904_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft904_3a-0001
Unique NameEsuBft904_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_553contigScaffold_553:902733..904560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft904_3
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length141
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial ubiquitin ligase activator of NFKB 1
Ec32 orthologEc-26_001140.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft904_3aEsuBft904_3aEctocarpus subulatus male Bft15bgeneScaffold_553 902733..904560 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft904_3a-0001-exonagat-exon-64261Ectocarpus subulatus male Bft15bexonScaffold_553 902733..903968 -
EsuBft904_3a-0001-exonEsuBft904_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_553 904378..904560 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft904_3a-0001-exonagat-three_prime_utr-22927Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_553 902733..903770 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft904_3a-0001-cdsEsuBft904_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_553 903771..903968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft904_3a-0001EsuBft904_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_553 903771..904560 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft904_3a-0001 ID=EsuBft904_3a-0001|Name=EsuBft904_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1419bp|location=Sequence derived from alignment at Scaffold_553:902733..904560- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTGCTTGCGGTCGGGTCGCGACTCATTGTGCTCGGCGAAGTGGG
CGAAGACCCCGAGGGCGCCGAAGGCGACGTCGTGCTACGGAAGGCTGCAC
CCTCCAGCATCCTGGACCTGAAGACCACCTCCATCTCCAGGCCGTTCGTG
GCTTCCATCAAGTCTGAGCAGGGTCTGCTGCAGGAGATCGAACGGTCGGG
GCGCATATACTTCTGGCTGGCGCTACCCTCCGTCGCAGTGGGGCTCGCCT
TTGCCTACGTGGGGGTGCTGCGCGTGCTCGCCGCAATCGAAGACCGCTCT
GCGGAGCGCCCGGCTTTGACGGAGAGCGGGCACAGTGCCCCGCCCGCTTC
GAAGGGGCTGCAAGGGTGGAGAAGGGGTTGAGAGTAGGCCTTGCCGTGAC
ATTTTCGTTATCGGTGCACGGGTGGCCGGGATCATGACGTTTGACAGTGC
GGTGTGTAGGTGAAGTTCAGGAGACTGAATATTTCGTCTTTTTTCGCAGC
GCGGGCACGAGATTGGTCACCGGTTGGAGCTGCCTCTGTTGTCGTACGCG
TTTCAATTCATGGCCATGACCTTGGCGTTGATTGTTGTCCTCGCCTAGTT
GCAACCCTCGCTCGACGTTCTTCGCACTGCTGTTAGGGCTGCAAGGTCGG
GGGTCTTCCCAGCGTGTTCCCAATCTGTCCGGTGTCCAATGTCTACTAGC
CGTCTCTATGGGTGTGACGTTCAAGGCGCGACGTGAGGGCGATGATCCCG
ACATGGAACGGCACGTTGGTCATGGTCACGGGATCGTGCGGCGTCGAGGA
TGTGTTGAGAGTCTTGCGGCCTTGCTGTCGACGCTAACCACGTCGACCCT
CCAACCCCTTGGATTTTGTTTCCTTCGAAATGTCGTCTTTGTGCCAACGA
CGTATGGAGTGGAGTCAGCAATATATCCTTGCAGGCCGGAGGGAGAGAGA
GAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
ATGTTCAACGGCGTTGGTTCGGCCCTCGCCTCCCGCGGCAGAGCAAAGAC
AACGAAAGAACGAAATTTTTTGTCGGAAAGCGGTGGATATCCAGCCGTTG
TTCACGGGCTGCTGTGTGCTGTTCACTTTTTTTTGAGGAAAGACCGAGGG
GGAAAGCGGGAGAGGGCGATAGAGTAGGCGGATGGACGGTAATTCACGGC
TGTGCGGGGATTCGTCTCGACATTCCGGGTGTATATCTGTAAATCCAAAA
CGACGTCGGCGTTCTCGTTCTCTTGCACAGTCCCGTCGACGATGCCAGTG
CTTTTTCGCCGCGCACACAATACGCTGCTTTTTCATTTCTTGCAATGAGA
CGATTTAGATGGGACGATGAAGAAACTTCTCTGCTTCGAGGAAGCCGCTA
ACACCATGAACCCCTGTTT
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protein sequence of EsuBft904_3a-0001

>EsuBft904_3 ID=EsuBft904_3|Name=EsuBft904_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MQVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFV
ASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLAAIEDRS
AERPALTESGHSAPPASKGLQGWRRG
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mRNA from alignment at Scaffold_553:902733..904560-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft904_3a-0001 ID=EsuBft904_3a-0001|Name=EsuBft904_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1828bp|location=Sequence derived from alignment at Scaffold_553:902733..904560- (Ectocarpus subulatus male Bft15b)
ATGCAGGTGCTTGCGGTCGGGTCGCGACTCATTGTGCTCGGCGAAGTGGG
CGAAGACCCCGAGGGCGCCGAAGGCGACGTCGTGCTACGGAAGGCTGCAC
CCTCCAGCATCCTGGACCTGAAGACCACCTCCATCTCCAGGCCGTTCGTG
GCTTCCATCAAGTCTGAGCAGGGTCTGCTGCAGGTGTGAGCTAAGTCCCT
TTTCTTGTTGTCATAAGCATTGTGTAGCGCCGATTACGTGTTTCCAGGAA
TTGCTGTCTAAAAGAGCTATGTGGTCTTGGAGCCAACAGCCCAATCTTCC
AGCAAGAAGATCCTGTACTTCCCGGGAGTACTATCCAACATTTTTTCGTT
ACCTTGACTTGGCCTCCTTTTTGTGGCTTCTTTGTTGTTGCGCTTCTAAA
TGTAGACGGGATGGGAGCACCTCATGTCTCGGGACGTGTTTCGTTCGCCA
CAAATCACGTCCCGTGTTGCGTCGGCGTTCCGGTTCGCTACAGCCACGAC
ACGTCGTGCGCGCCGTTGTCCCGCATTCCTGCCGACGTTGCTCCCACTTC
GTCACGTACGCCTGACGGAAATTGATGCTTCGGCACCGGCAGGAGATCGA
ACGGTCGGGGCGCATATACTTCTGGCTGGCGCTACCCTCCGTCGCAGTGG
GGCTCGCCTTTGCCTACGTGGGGGTGCTGCGCGTGCTCGCCGCAATCGAA
GACCGCTCTGCGGAGCGCCCGGCTTTGACGGAGAGCGGGCACAGTGCCCC
GCCCGCTTCGAAGGGGCTGCAAGGGTGGAGAAGGGGTTGAGAGTAGGCCT
TGCCGTGACATTTTCGTTATCGGTGCACGGGTGGCCGGGATCATGACGTT
TGACAGTGCGGTGTGTAGGTGAAGTTCAGGAGACTGAATATTTCGTCTTT
TTTCGCAGCGCGGGCACGAGATTGGTCACCGGTTGGAGCTGCCTCTGTTG
TCGTACGCGTTTCAATTCATGGCCATGACCTTGGCGTTGATTGTTGTCCT
CGCCTAGTTGCAACCCTCGCTCGACGTTCTTCGCACTGCTGTTAGGGCTG
CAAGGTCGGGGGTCTTCCCAGCGTGTTCCCAATCTGTCCGGTGTCCAATG
TCTACTAGCCGTCTCTATGGGTGTGACGTTCAAGGCGCGACGTGAGGGCG
ATGATCCCGACATGGAACGGCACGTTGGTCATGGTCACGGGATCGTGCGG
CGTCGAGGATGTGTTGAGAGTCTTGCGGCCTTGCTGTCGACGCTAACCAC
GTCGACCCTCCAACCCCTTGGATTTTGTTTCCTTCGAAATGTCGTCTTTG
TGCCAACGACGTATGGAGTGGAGTCAGCAATATATCCTTGCAGGCCGGAG
GGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAATGTTCAACGGCGTTGGTTCGGCCCTCGCCTCCCGCGGCAG
AGCAAAGACAACGAAAGAACGAAATTTTTTGTCGGAAAGCGGTGGATATC
CAGCCGTTGTTCACGGGCTGCTGTGTGCTGTTCACTTTTTTTTGAGGAAA
GACCGAGGGGGAAAGCGGGAGAGGGCGATAGAGTAGGCGGATGGACGGTA
ATTCACGGCTGTGCGGGGATTCGTCTCGACATTCCGGGTGTATATCTGTA
AATCCAAAACGACGTCGGCGTTCTCGTTCTCTTGCACAGTCCCGTCGACG
ATGCCAGTGCTTTTTCGCCGCGCACACAATACGCTGCTTTTTCATTTCTT
GCAATGAGACGATTTAGATGGGACGATGAAGAAACTTCTCTGCTTCGAGG
AAGCCGCTAACACCATGAACCCCTGTTT
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Coding sequence (CDS) from alignment at Scaffold_553:902733..904560-

>EsuBft904_3a-0001 ID=EsuBft904_3a-0001|Name=EsuBft904_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_553:902733..904560- (Ectocarpus subulatus male Bft15b)
ATGCAGGTGCTTGCGGTCGGGTCGCGACTCATTGTGCTCGGCGAAGTGGG
CGAAGACCCCGAGGGCGCCGAAGGCGACGTCGTGCTACGGAAGGCTGCAC
CCTCCAGCATCCTGGACCTGAAGACCACCTCCATCTCCAGGCCGTTCGTG
GCTTCCATCAAGTCTGAGCAGGGTCTGCTGCAGGAGATCGAACGGTCGGG
GCGCATATACTTCTGGCTGGCGCTACCCTCCGTCGCAGTGGGGCTCGCCT
TTGCCTACGTGGGGGTGCTGCGCGTGCTCGCCGCAATCGAAGACCGCTCT
GCGGAGCGCCCGGCTTTGACGGAGAGCGGGCACAGTGCCCCGCCCGCTTC
GAAGGGGCTGCAAGGGTGGAGAAGGGGTTGA
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