EsuBft975_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft975_3a-0001
Unique NameEsuBft975_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_553contigScaffold_553:62445..63007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft975_3
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length45
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft975_3aEsuBft975_3aEctocarpus subulatus male Bft15bgeneScaffold_553 62445..63007 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_3a-0001-exonEsuBft975_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_553 62445..62745 -
EsuBft975_3a-0001-exonagat-exon-46329Ectocarpus subulatus male Bft15bexonScaffold_553 62852..63007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_3a-0001-cdsEsuBft975_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_553 62445..62745 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_3a-0001-exonagat-five_prime_utr-15414Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_553 62953..63007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_3a-0001EsuBft975_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_553 62445..62952 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft975_3a-0001 ID=EsuBft975_3a-0001|Name=EsuBft975_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=457bp|location=Sequence derived from alignment at Scaffold_553:62445..63007- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTCCGACAGGGATGCAACCTGGCCCCTCTGCTGTTCAACTTGTTCTTTG
CCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTG
ACGGCGGACATGGTCAAGATCGGGACACAAGGGGAGTACACGGGCAAGAA
GGGCAGGTCGGCGGGGAGGAAGACAACGGTGGTGACGGACGCGGAGGCCC
TGTGGGCCATGCTCTACGCGGACGACGCGGCCATCGTCTTGCGCTCGTCG
GAGAGTCCCAAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTATT
CGGACTGATGGTNNNNCATCTCCGCGGACGGGAAGGCCGACCGGGAGATC
ACAAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCTGGGACAGTGCTTC
GATGTACGACAGGCGAAGGGCCGACCGCCAGCTCAAGATCCGGCTACTCA
AGGCTGA
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protein sequence of EsuBft975_3a-0001

>EsuBft975_3 ID=EsuBft975_3|Name=EsuBft975_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=133bp
MLMVAVAEFDKDPKVTADMVKIGTQGEYTGKKGRSAGRKTTVVTDAEALW
AMLYADDAAIVLRSSESPKKMMSVIVRVAGLFGLMVXHLRGREGRPGDHK
PQLPSVEVLPLGQCFDVRQAKGRPPAQDPATQG
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mRNA from alignment at Scaffold_553:62445..63007-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft975_3a-0001 ID=EsuBft975_3a-0001|Name=EsuBft975_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=563bp|location=Sequence derived from alignment at Scaffold_553:62445..63007- (Ectocarpus subulatus male Bft15b)
TCTCCGACAGGGATGCAACCTGGCCCCTCTGCTGTTCAACTTGTTCTTTG
CCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTG
ACGGCGGACATGGTCAAGATCGGGACACAAGGGGAGTACACGGGCAAGAA
GGGCAGGTCGGCGGGGAGGAAGACGACGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGTGGAGTACACGGG
CAAGAAGGGCAGGTCGGCGGGGAGGAAGACAACGGTGGTGACGGACGCGG
AGGCCCTGTGGGCCATGCTCTACGCGGACGACGCGGCCATCGTCTTGCGC
TCGTCGGAGAGTCCCAAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGG
CCTATTCGGACTGATGGTNNNNCATCTCCGCGGACGGGAAGGCCGACCGG
GAGATCACAAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCTGGGACAG
TGCTTCGATGTACGACAGGCGAAGGGCCGACCGCCAGCTCAAGATCCGGC
TACTCAAGGCTGA
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Coding sequence (CDS) from alignment at Scaffold_553:62445..63007-

>EsuBft975_3a-0001 ID=EsuBft975_3a-0001|Name=EsuBft975_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=402bp|location=Sequence derived from alignment at Scaffold_553:62445..63007- (Ectocarpus subulatus male Bft15b)
ATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGC
GGACATGGTCAAGATCGGGACACAAGGGGAGTACACGGGCAAGAAGGGCA
GGTCGGCGGGGAGGAAGACAACGGTGGTGACGGACGCGGAGGCCCTGTGG
GCCATGCTCTACGCGGACGACGCGGCCATCGTCTTGCGCTCGTCGGAGAG
TCCCAAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTATTCGGAC
TGATGGTNNNNCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACAAG
CCGCAGCTGCCGAGCGTGGAAGTGCTACCGCTGGGACAGTGCTTCGATGT
ACGACAGGCGAAGGGCCGACCGCCAGCTCAAGATCCGGCTACTCAAGGCT
GA
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