EsuBft975_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft975_8a-0001
Unique NameEsuBft975_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_553contigScaffold_553:5349..8375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXD3
ProteomeIdEsuBft975_8
Protein domainsPTHR19303
Ownerapollo_admin@sb-roscoff.fr
Notepogo transposable element with krab domain os:homo sapiens gn:pogk pe:1 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length2604
Hectar predicted targeting categoryother localisation
Evalue2.58e-84
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePOGK
KEGG koko:K09228
DescriptionDNA binding
COG categoryCH
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft975_8aEsuBft975_8aEctocarpus subulatus male Bft15bgeneScaffold_553 5349..8375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_8a-0001EsuBft975_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_553 6527..8122 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_8a-0001-exonEsuBft975_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_553 5349..6801 -
EsuBft975_8a-0001-exonagat-exon-46343Ectocarpus subulatus male Bft15bexonScaffold_553 7134..7776 -
EsuBft975_8a-0001-exonagat-exon-46342Ectocarpus subulatus male Bft15bexonScaffold_553 7868..8375 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_8a-0001-exonagat-three_prime_utr-23688Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_553 5349..6526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_8a-0001-cdsEsuBft975_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_553 6527..6801 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_8a-0001-exonagat-five_prime_utr-15420Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_553 8123..8375 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft975_8a-0001 ID=EsuBft975_8a-0001|Name=EsuBft975_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2604bp|location=Sequence derived from alignment at Scaffold_553:5349..8375- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTGCGCCAAGACTCCGATATGTGCGATCCTAACATTGAAAACCACAGG
GGATAGCAGCACTTCGCGTGTATGGTATTGCTGCAAAACGATCACCACAC
AACCGACAGACAAGCTGTTATAGTAGCTGCACACACAAACGAGTCTCGGG
GAATTGCCACCACAACAGCTCCGTGGCGGAGAAATACCGGCGGAAATCGG
GAAAATGCCCGGGACGGAGCTGCGGGCTCGACCGCACGCAACGCGCGGCT
ACGATGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCCTCACAGGCCTC
ACAAGCCTCACAGGCTAGTGCTGGCGGTCCTTCCTCTGCGGATCAGGGAG
CTGCCGCTGCGGACTCTAAGCCAACCGGCGAGGCTATCGATGAGATGCTA
GCCGTCAACGACCCCGTTAAAAACAGCAACGGCAAACACGCGTACCTGGA
GCCCAACTTCCCGATCGAGCGGTCAGGCAGTGGGAGGGAAAGGGAGCTAC
CCCATCCGGTGCCTCGGAAGCGTATCATCGAGTGGCTGAAGCAGGAGGAG
CAGCTCAGGGAGAAGGTCAGCGCCAACCCCAAGCTTTCGAAGGCCAAGCA
GGTTCACAGCGGAGGGAAAGCTTCGATAGTCGACGCCGAACAAGCCCTTG
TGGACTACATCAACGAGCGGCACAAGCAGCACCGCGGTTGTGGTAATCGG
GAGGTGATGAACAAGCTGCTCGAGCTGAAGCCTGACGCCCTTGGCGGGGT
GCCGGCGAACGCGAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTCA
ACTCCTGGTACCAACGGTTCCGCAAGCGGAATGGGTTCAGAATCCGCCGG
CGTACCAGCGTGGGCCAGAAACTGCCGAAGGGGTACGAGGGTATGGCGTG
GGCGACGGTGATGAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGA
TCTACGCTCGGCGCCACCCGCCGGCACATGACGAGAGCCCCATCAAAGGG
GAGGATCTGACTTCCGAGCAGCTGGCGTCTGTGGAAGCGGAGGTTTTCGA
GGAAGTCGGCATCATGGGCCAGACGCCAGTCCAGCACGAGGTGCCGGTGG
CGATCACTCTGGAGAAGACTGGTGCGAAGGATGCTCGCATCAGCACAGGA
GGCAAAGAGAAGGAACGCTTCACGCTCGTCCTGGCTGTCATGGCGGACGG
CAAAAAGGTTTCGCCGCGCAACATCTTCAAGGGCACGCCGTTCTTCCCCC
CGACCATGAGCGGCAAGGGCAAGAGCACCCTGCCGCGGAAGAACTCCGTC
GCGTGGGAGATCCATCCTGCGAACCGCGCCAAGCACGGCTACCCTGCCAA
CGGAATGTCCTTCGGCGTGCAGGAGAAGAGCTGGAGTGACCAGCGGGAGT
GCAACGGGTGGATCTCGGGCAGCTGAAAGCTCCGTCCCAACAACGGCAGC
ATCGTCCAGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCCA
CAAGGACGAGGGTTTCATCGCCGCCCTCAAGAGAGACGCCAACACCATCG
TCCTCTTCATCCCAGGCGGGCTGATGCGCTTGCTCCAACCGCTCGACCGC
ATGCTCAACTAGCAGGTGAAGCGGCTGCTGTGGGGCAAGTACACCGCCTA
CAGCGCGTCGGCGGTCGCAGACTCCCGGTCGGGGAAGCTGAAGTCACCGG
AGGGTGGGGTCGTCTCTACGTGGTGCAAGGAAGCGCGGGAGTCCATCAGC
CCCGAGACGGTAAAGACTTGCTTCAAGATCTGCGGTCTCACGCTCGCGCT
CGACGGCAGCGAAGACCACGCCTGGTGCGAGCACAACTTCGGGAAATACC
GCGACCTTCTCAAGGAGCAGCACGCCGTGTGGCTTGCTGAGCACCCCGAC
GTGACTCTCCGGCCGCTCGAGCTGCCGAAGGTACCAGGGGGGTTCGACTC
CAACCCCATCCCGGCTGCTCAGAAGGAGGTCGAGGGAAAGCTGCTGCCCT
ACGTCGCTCGTGAGAGCGACAGCGAGGTGGAGGTCTTGGAGGGCGACAGC
GACGTGGAAGTCGTGGAGGGGCAGGGGGGCGGGGACGCCGCAGGAGAAGT
AGTCGAACTTTGAATCATAGTTGTTTGGGATTGCCAGTGAGATTGGATGT
TTTTGCGATGGTAGGGGCGCGGGCACGAAGTAGAGTTCAACCCGCCTAGG
AAGTACAGTAGTAGGACGTTGGTAGCTCGTAGTGGTAGTTTGGTGTGATT
TTTTACTTCGTTTTTGGTTTCATCTGCGTTTAGAATTGTTGAGTGGATGC
CGTTTGTCGATTTGCCGATCTTGATTCTTCAGAACGAAAAGAAGAGAACA
AAGAGTACAAATACCACATTTTTGAACATCGTCATGGTGCCAAGGGCAGC
AGTAGCAGTGGAGCACGCGAATCAAGCTCCCACAGTATCCGGAATTTCCA
GCACAAGATGCTGGTGAAAGGGTATCACCTACAGCCAAACCTCACCGCAC
ATATCGGCGTGTCCGCACAGTGTGCGGAGACGACGATACCTGTGCGATAA
TCTAGCAAATCATTCGGAACCCGTTTTTTTTTCCGCACACCCTGTGCCAA
GACC
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protein sequence of EsuBft975_8a-0001

>EsuBft975_8 ID=EsuBft975_8|Name=EsuBft975_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=390bp
MSEGASAGPADASQASQASQASAGGPSSADQGAAAADSKPTGEAIDEMLA
VNDPVKNSNGKHAYLEPNFPIERSGSGRERELPHPVPRKRIIEWLKQEEQ
LREKVSANPKLSKAKQVHSGGKASIVDAEQALVDYINERHKQHRGCGNRE
VMNKLLELKPDALGGVPANAKPEEALAFKVKFNSWYQRFRKRNGFRIRRR
TSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAHDESPIKGE
DLTSEQLASVEAEVFEEVGIMGQTPVQHEVPVAITLEKTGAKDARISTGG
KEKERFTLVLAVMADGKKVSPRNIFKGTPFFPPTMSGKGKSTLPRKNSVA
WEIHPANRAKHGYPANGMSFGVQEKSWSDQRECNGWISGS
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mRNA from alignment at Scaffold_553:5349..8375-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft975_8a-0001 ID=EsuBft975_8a-0001|Name=EsuBft975_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3027bp|location=Sequence derived from alignment at Scaffold_553:5349..8375- (Ectocarpus subulatus male Bft15b)
CCCTGCGCCAAGACTCCGATATGTGCGATCCTAACATTGAAAACCACAGG
GGATAGCAGCACTTCGCGTGTATGGTATTGCTGCAAAACGATCACCACAC
AACCGACAGACAAGCTGTTATAGTAGCTGCACACACAAACGAGTCTCGGG
GAATTGCCACCACAACAGCTCCGTGGCGGAGAAATACCGGCGGAAATCGG
GAAAATGCCCGGGACGGAGCTGCGGGCTCGACCGCACGCAACGCGCGGCT
ACGATGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCCTCACAGGCCTC
ACAAGCCTCACAGGCTAGTGCTGGCGGTCCTTCCTCTGCGGATCAGGGAG
CTGCCGCTGCGGACTCTAAGCCAACCGGCGAGGCTATCGATGAGATGCTA
GCCGTCAACGACCCCGTTAAAAACAGCAACGGCAAACACGCGTACCTGGA
GCCCAACTTCCCGATCGAGCGGTCAGGCAGTGGGAGGGAAAGGGAGCTAC
CCCATCCGGTTCAAACTGAAGGCGGCGGCCTACACACGGGAGATCTGCCC
GTGCGACAGTCAACCGGTGGGAAACAACGGCGCGGCGAAAGTTCTCCAGG
TGCCTCGGAAGCGTATCATCGAGTGGCTGAAGCAGGAGGAGCAGCTCAGG
GAGAAGGTCAGCGCCAACCCCAAGCTTTCGAAGGCCAAGCAGGTTCACAG
CGGAGGGAAAGCTTCGATAGTCGACGCCGAACAAGCCCTTGTGGACTACA
TCAACGAGCGGCACAAGCAGCACCGCGGTTGTGGTAATCGGGAGGTGATG
AACAAGCTGCTCGAGCTGAAGCCTGACGCCCTTGGCGGGGTGCCGGCGAA
CGCGAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTCAACTCCTGGT
ACCAACGGTTCCGCAAGCGGAATGGGTTCAGAATCCGCCGGCGTACCAGC
GTGGGCCAGAAACTGCCGAAGGGGTACGAGGGTATGGCGTGGGCGACGGT
GATGAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCTACGCTC
GGCGCCACCCGCCGGCACATGACGAGAGCCCCATCAAAGGGGAGGATCTG
ACTTCCGAGCAGCTGGCGTCTGTGGAAGCGGAGGTTTTCGAGGAAGTCGG
CATCATGGGCCAGACGCCAGTCCAGCACGAGGTGCCGGTGGCGATCACTC
TGGAGAAGACTGGTGCGAAGGATGCTCGCATCAGCACAGGAGGTGAGGGT
GAGCTAATATTTTTGCCAAAATTTTGTGTGGTGTGCGGATTTTTTGTCGT
TGGAAAATTTTTGAAGACACGTTTTTTTTTGCGTGCCGGTACACGGTGCG
ATGTAGCTCTATCGGTAGACACAAGAGGGTTGCTACCTTTTTCTGCGGGA
TTATTCTACACTTCCTTTCTCATGGCATCCAAACTATCAACCAACTTAGT
TTTCGAAACGTCCGGTACCGTTTGCATCCATTGTATCAACCATACACCGC
AGTCCTCGCAGAAATATTCAACACTCTAATCCCCCCCCCCTCCCCTCGCG
TTGATTTTTTCCCCCTCCCCTCAGGCAAAGAGAAGGAACGCTTCACGCTC
GTCCTGGCTGTCATGGCGGACGGCAAAAAGGTTTCGCCGCGCAACATCTT
CAAGGGCACGCCGTTCTTCCCCCCGACCATGAGCGGCAAGGGCAAGAGCA
CCCTGCCGCGGAAGAACTCCGTCGCGTGGGAGATCCATCCTGCGAACCGC
GCCAAGCACGGCTACCCTGCCAACGGAATGTCCTTCGGCGTGCAGGAGAA
GAGCTGGAGTGACCAGCGGGAGTGCAACGGGTGGATCTCGGGCAGCTGAA
AGCTCCGTCCCAACAACGGCAGCATCGTCCAGCAGCGCCCGTGCATCCTG
GTGCTGGACGACTTCAAGTGCCACAAGGACGAGGGTTTCATCGCCGCCCT
CAAGAGAGACGCCAACACCATCGTCCTCTTCATCCCAGGCGGGCTGATGC
GCTTGCTCCAACCGCTCGACCGCATGCTCAACTAGCAGGTGAAGCGGCTG
CTGTGGGGCAAGTACACCGCCTACAGCGCGTCGGCGGTCGCAGACTCCCG
GTCGGGGAAGCTGAAGTCACCGGAGGGTGGGGTCGTCTCTACGTGGTGCA
AGGAAGCGCGGGAGTCCATCAGCCCCGAGACGGTAAAGACTTGCTTCAAG
ATCTGCGGTCTCACGCTCGCGCTCGACGGCAGCGAAGACCACGCCTGGTG
CGAGCACAACTTCGGGAAATACCGCGACCTTCTCAAGGAGCAGCACGCCG
TGTGGCTTGCTGAGCACCCCGACGTGACTCTCCGGCCGCTCGAGCTGCCG
AAGGTACCAGGGGGGTTCGACTCCAACCCCATCCCGGCTGCTCAGAAGGA
GGTCGAGGGAAAGCTGCTGCCCTACGTCGCTCGTGAGAGCGACAGCGAGG
TGGAGGTCTTGGAGGGCGACAGCGACGTGGAAGTCGTGGAGGGGCAGGGG
GGCGGGGACGCCGCAGGAGAAGTAGTCGAACTTTGAATCATAGTTGTTTG
GGATTGCCAGTGAGATTGGATGTTTTTGCGATGGTAGGGGCGCGGGCACG
AAGTAGAGTTCAACCCGCCTAGGAAGTACAGTAGTAGGACGTTGGTAGCT
CGTAGTGGTAGTTTGGTGTGATTTTTTACTTCGTTTTTGGTTTCATCTGC
GTTTAGAATTGTTGAGTGGATGCCGTTTGTCGATTTGCCGATCTTGATTC
TTCAGAACGAAAAGAAGAGAACAAAGAGTACAAATACCACATTTTTGAAC
ATCGTCATGGTGCCAAGGGCAGCAGTAGCAGTGGAGCACGCGAATCAAGC
TCCCACAGTATCCGGAATTTCCAGCACAAGATGCTGGTGAAAGGGTATCA
CCTACAGCCAAACCTCACCGCACATATCGGCGTGTCCGCACAGTGTGCGG
AGACGACGATACCTGTGCGATAATCTAGCAAATCATTCGGAACCCGTTTT
TTTTTCCGCACACCCTGTGCCAAGACC
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Coding sequence (CDS) from alignment at Scaffold_553:5349..8375-

>EsuBft975_8a-0001 ID=EsuBft975_8a-0001|Name=EsuBft975_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1173bp|location=Sequence derived from alignment at Scaffold_553:5349..8375- (Ectocarpus subulatus male Bft15b)
ATGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCCTCACAGGCCTCACA
AGCCTCACAGGCTAGTGCTGGCGGTCCTTCCTCTGCGGATCAGGGAGCTG
CCGCTGCGGACTCTAAGCCAACCGGCGAGGCTATCGATGAGATGCTAGCC
GTCAACGACCCCGTTAAAAACAGCAACGGCAAACACGCGTACCTGGAGCC
CAACTTCCCGATCGAGCGGTCAGGCAGTGGGAGGGAAAGGGAGCTACCCC
ATCCGGTGCCTCGGAAGCGTATCATCGAGTGGCTGAAGCAGGAGGAGCAG
CTCAGGGAGAAGGTCAGCGCCAACCCCAAGCTTTCGAAGGCCAAGCAGGT
TCACAGCGGAGGGAAAGCTTCGATAGTCGACGCCGAACAAGCCCTTGTGG
ACTACATCAACGAGCGGCACAAGCAGCACCGCGGTTGTGGTAATCGGGAG
GTGATGAACAAGCTGCTCGAGCTGAAGCCTGACGCCCTTGGCGGGGTGCC
GGCGAACGCGAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTCAACT
CCTGGTACCAACGGTTCCGCAAGCGGAATGGGTTCAGAATCCGCCGGCGT
ACCAGCGTGGGCCAGAAACTGCCGAAGGGGTACGAGGGTATGGCGTGGGC
GACGGTGATGAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCT
ACGCTCGGCGCCACCCGCCGGCACATGACGAGAGCCCCATCAAAGGGGAG
GATCTGACTTCCGAGCAGCTGGCGTCTGTGGAAGCGGAGGTTTTCGAGGA
AGTCGGCATCATGGGCCAGACGCCAGTCCAGCACGAGGTGCCGGTGGCGA
TCACTCTGGAGAAGACTGGTGCGAAGGATGCTCGCATCAGCACAGGAGGC
AAAGAGAAGGAACGCTTCACGCTCGTCCTGGCTGTCATGGCGGACGGCAA
AAAGGTTTCGCCGCGCAACATCTTCAAGGGCACGCCGTTCTTCCCCCCGA
CCATGAGCGGCAAGGGCAAGAGCACCCTGCCGCGGAAGAACTCCGTCGCG
TGGGAGATCCATCCTGCGAACCGCGCCAAGCACGGCTACCCTGCCAACGG
AATGTCCTTCGGCGTGCAGGAGAAGAGCTGGAGTGACCAGCGGGAGTGCA
ACGGGTGGATCTCGGGCAGCTGA
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