EsuBft1799_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1799_2a-0001
Unique NameEsuBft1799_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:138299..141155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1799_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length88
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_2aEsuBft1799_2aEctocarpus subulatus male Bft15bgeneScaffold_550 138299..141155 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_2a-0001-exonagat-exon-84918Ectocarpus subulatus male Bft15bexonScaffold_550 138299..138448 +
EsuBft1799_2a-0001-exonEsuBft1799_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 139712..140230 +
EsuBft1799_2a-0001-exonagat-exon-84919Ectocarpus subulatus male Bft15bexonScaffold_550 140942..141155 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_2a-0001-exonagat-five_prime_utr-4205Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_550 138299..138329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_2a-0001-cdsEsuBft1799_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 138330..138448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_2a-0001EsuBft1799_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 138330..141155 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1799_2a-0001 ID=EsuBft1799_2a-0001|Name=EsuBft1799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=883bp|location=Sequence derived from alignment at Scaffold_550:138299..141155+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGGGAGACTCTACTCCTCCATCTGTCCCACATGGACGCGACGAGGCGGG
CGGTGCTTAGTGGTACGGCAATCAGCCACGCATTCGACAACCTCCTCCGT
CCTTTGGCCGACAACCTGATATGGATGACCCGGAACAAGCTGGCCAAGAG
AGCGCTGACCAACAACTACTTGAAAAAGCTGTTGCTTGACGCGTATCTGG
CCTTCGAAGCCCTCACCGACCACCCCTACGGCTTCTTCAGCTTCATCGAC
GGGTATTTTCCGCTTCTTTCGAGTTTTGACGGCTGCGCCAAGGTGGCGAC
CAACATCTGCATCGAGAAGTACCTGCAACAGCGCATGCTGCAAGTGATCG
ACATGAGCCTTGATGCGATCTGGCTCGTCATCAGCATGCTGTCGCCGATG
GTGTTCGGAATGCGGCTGCAGTTCTCACAAAACACGCCGGTGACTTTTTG
CCCCCAAAACCGCAAGTCCAACATCATCGTGGTACCTGCTCGTGGACATG
CCCCGCGTAGCGGAGATGCACAGGCTGCCGATGGCCAAAAACTGATGGAG
CGTGTCCGGGAGAACAAGGATGGCCTTGGACTGTCGGAGATGTTGGAGGG
CATGTCGCTGGACGGGCTGAAAGACCTCTATCGTTTGTGCTTTGGGCCGC
GAGCGCCGGGAAATAGCAGGTACCCCAACAGGGTGCTGTTGATTGAGCTG
TTCAAGACGGTGGAGAAGCTCTGGCGGGAGAGCAACCATGGAAAGGAGGA
TTGCTCGTCTGGGGTGGAGGGGGGGTACAGCCCGGACGGAGTCCAGACGT
GCCATATGTTCATGCTGCGGGCGGAGAGCCCCACAGACTTGGCCGTGCTC
CTGTTGCACCACGTGGTGAGTGCCCCGTTGTAG
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protein sequence of EsuBft1799_2a-0001

>EsuBft1799_2 ID=EsuBft1799_2|Name=EsuBft1799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=283bp
MDATRRAVLSGTAISHAFDNLLRPLADNLIWMTRNKLAKRALTNNYLKKL
LLDAYLAFEALTDHPYGFFSFIDGYFPLLSSFDGCAKVATNICIEKYLQQ
RMLQVIDMSLDAIWLVISMLSPMVFGMRLQFSQNTPVTFCPQNRKSNIIV
VPARGHAPRSGDAQAADGQKLMERVRENKDGLGLSEMLEGMSLDGLKDLY
RLCFGPRAPGNSRYPNRVLLIELFKTVEKLWRESNHGKEDCSSGVEGGYS
PDGVQTCHMFMLRAESPTDLAVLLLHHVVSAPL
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mRNA from alignment at Scaffold_550:138299..141155+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1799_2a-0001 ID=EsuBft1799_2a-0001|Name=EsuBft1799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2857bp|location=Sequence derived from alignment at Scaffold_550:138299..141155+ (Ectocarpus subulatus male Bft15b)
CGGGGAGACTCTACTCCTCCATCTGTCCCACATGGACGCGACGAGGCGGG
CGGTGCTTAGTGGTACGGCAATCAGCCACGCATTCGACAACCTCCTCCGT
CCTTTGGCCGACAACCTGATATGGATGACCCGGAACAAGCTGGCCAAGAG
GTGATTGTGAAAATCGTCATCATCCACTGTTTGTTGTTCTTTGCCTTCCA
CTTGTAGCAGCACGGAGCGATCCAATGTGTCACGGGGGGGTGTTAACCTG
AGACTGCAAGGGAAACACCCGTCTTCGGGAGCAGCCCTCCGTGATCAAGC
TAGGAAATAAATATTAACCCCTTCGAACTCCAGCCCCGAAACCCTTGTTG
GCTATCGTAAATCAAACGCACGATCTTCGAACCGAATGCAGCAATTAGTG
CAGGTGTGGCAATGCCAAGGCGGTAGGTCGTAGCCACTGTATTTATCCCC
CACATTTTGACCTCAAAGTCGAATGTAGGACAACCTAATTCCGGCTTTCC
TGGGGGATCAAAGTACGATATTGTTTCAAGGAGTCATTGATCACACTTTT
CCCTCAGGGCTGTTGTTATGTAAGTCGTTCCCAGTACATTTCGTATCCCC
CTCCCAGGGGACGTTGGATGAGGATACCGCAAAGCGCTTTTAGTATTCAC
GGAGGTGCGAGGGTTTTCCAAACCGCTTCGTTTGTTTTCGCGCCCCCGGT
CCCACTGCATCTATTCTCATTTTTTTTCCCGCCCCCCCCCTGCGAAGTCA
AACCAATGCGCGGAAGGAAAGGACAACGAAGTCTTTGGGCTGGTCTTAGG
ATAGGGACAAGAAGGGGTGGGGGGAATATAGCTGAAACATGTTGGGTATA
TTGCGGTAGTATCTCGGCTGGTCTGCATCGTGCAACAAGTAGTTTGACCA
GCTGGGTGGGGTGCAATTTCGTTGCAGAGAGGGTTATTGAGCATCGGCAG
CACATTGTTTTGGCCTACAGTACTTGCCATTTATATTCACCCGGTACTTG
CGTGAAGGCGGCATGTACCTCCGTGCCAAAACATTATGTTGAGGAAGCTG
ATGTGTACCGGCAACATGCGCTCCGTGGTAGAGCTGGGCTCCGGCGTGTC
TCAAGCGATTTTTCTTAAGAATGTCACCCTCGAGGTGGCACGGTCAACCG
TCGTGCGATCGTTCTTGAAAGGTGTTCATGTCCCATGTTATCGCAGTACC
GAATTAAATACCGGAGTGGAAAATGCAAATAGATCACTTTGTTTTGGTTT
TTCGCATCACGGTGCGGACTGGTTCCCTGGGCGTTGGTAATGCGCGGTGC
AGCATGGACGTGTTGATACGTAGGGGCGTGACCCCCCAACGCTTGGAATG
AAGCTCACTCCCCTTCCGGCATGTTCCTGTTGCTGTCCCCGGCCTACCGC
TCTCTCCTGCCAGAGCGCTGACCAACAACTACTTGAAAAAGCTGTTGCTT
GACGCGTATCTGGCCTTCGAAGCCCTCACCGACCACCCCTACGGCTTCTT
CAGCTTCATCGACGGGTATTTTCCGCTTCTTTCGAGTTTTGACGGCTGCG
CCAAGGTGGCGACCAACATCTGCATCGAGAAGTACCTGCAACAGCGCATG
CTGCAAGTGATCGACATGAGCCTTGATGCGATCTGGCTCGTCATCAGCAT
GCTGTCGCCGATGGTGTTCGGAATGCGGCTGCAGTTCTCACAAAACACGC
CGGTGACTTTTTGCCCCCAAAACCGCAAGTCCAACATCATCGTGGTACCT
GCTCGTGGACATGCCCCGCGTAGCGGAGATGCACAGGCTGCCGATGGCCA
AAAACTGATGGAGCGTGTCCGGGAGAACAAGGATGGCCTTGGACTGTCGG
AGATGTTGGAGGGCATGTCGCTGGACGGGCTGAAAGACCTCTATCGTTTG
TGCTTTGGGCCGCGAGCGCCGGGAAATAGCAGGTATGTTTCACGAGAAGC
TACAGCGATTTCTTTTGCCCATATCGTCAATATTCTTGAGGTGGTAGTGC
TTATTACAGAATGCATCGCTTAATTTCCGTAGTATTTAGTTTTTTTCCCC
GTTTGGTACTCTGCGATGATCATGTTGCGTTTTGTTCGAGAAGAAACAGT
GCTTCCGTGAGGCACTACGAGAAACCGTTTCTTGGTTTTTACGCAGGGGT
TGTACTTGTCATAGTTCCACCGCACATTTGAAGTTGCTCCATTGAGGGCT
GAGAGGTAGCTCGAGACTATTGCAGTAGTTGATTCAACAGGTATCATTAT
TCATATCGAAAACATCGACAGCTATCCGCACGTTTGTTTTCCGTGTGGGG
GAGTAGTCGAGATCGTCGGAAATATGGACGCCCGCCATGTGCGTCCAATT
TATGCATTCGGGCCGGGTGTTTCGCTCATCAAGGTAACGTCTGTTGCAAA
CCTCCAAACTTATCCATCTCACATCTCAAGAAAAGACTCGGGACGCCGAA
AGTGCATGTGCACCAATGTGGGAACCTTTCATTTATCGCGCAGTGCGAGA
CATGCTTCCTTTTTCCACACGAAGTAGGGCGTGTTTGCATACAGCAAAGA
GCAATTGCACTGCCATGAGCACCGATCGCTCTCATACAAGATTTTCTGTC
GGTCTCTTGTACACTGCCCCCCCTCCACTCCCCCCACCCTCAGGTACCCC
AACAGGGTGCTGTTGATTGAGCTGTTCAAGACGGTGGAGAAGCTCTGGCG
GGAGAGCAACCATGGAAAGGAGGATTGCTCGTCTGGGGTGGAGGGGGGGT
ACAGCCCGGACGGAGTCCAGACGTGCCATATGTTCATGCTGCGGGCGGAG
AGCCCCACAGACTTGGCCGTGCTCCTGTTGCACCACGTGGTGAGTGCCCC
GTTGTAG
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Coding sequence (CDS) from alignment at Scaffold_550:138299..141155+

>EsuBft1799_2a-0001 ID=EsuBft1799_2a-0001|Name=EsuBft1799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=852bp|location=Sequence derived from alignment at Scaffold_550:138299..141155+ (Ectocarpus subulatus male Bft15b)
ATGGACGCGACGAGGCGGGCGGTGCTTAGTGGTACGGCAATCAGCCACGC
ATTCGACAACCTCCTCCGTCCTTTGGCCGACAACCTGATATGGATGACCC
GGAACAAGCTGGCCAAGAGAGCGCTGACCAACAACTACTTGAAAAAGCTG
TTGCTTGACGCGTATCTGGCCTTCGAAGCCCTCACCGACCACCCCTACGG
CTTCTTCAGCTTCATCGACGGGTATTTTCCGCTTCTTTCGAGTTTTGACG
GCTGCGCCAAGGTGGCGACCAACATCTGCATCGAGAAGTACCTGCAACAG
CGCATGCTGCAAGTGATCGACATGAGCCTTGATGCGATCTGGCTCGTCAT
CAGCATGCTGTCGCCGATGGTGTTCGGAATGCGGCTGCAGTTCTCACAAA
ACACGCCGGTGACTTTTTGCCCCCAAAACCGCAAGTCCAACATCATCGTG
GTACCTGCTCGTGGACATGCCCCGCGTAGCGGAGATGCACAGGCTGCCGA
TGGCCAAAAACTGATGGAGCGTGTCCGGGAGAACAAGGATGGCCTTGGAC
TGTCGGAGATGTTGGAGGGCATGTCGCTGGACGGGCTGAAAGACCTCTAT
CGTTTGTGCTTTGGGCCGCGAGCGCCGGGAAATAGCAGGTACCCCAACAG
GGTGCTGTTGATTGAGCTGTTCAAGACGGTGGAGAAGCTCTGGCGGGAGA
GCAACCATGGAAAGGAGGATTGCTCGTCTGGGGTGGAGGGGGGGTACAGC
CCGGACGGAGTCCAGACGTGCCATATGTTCATGCTGCGGGCGGAGAGCCC
CACAGACTTGGCCGTGCTCCTGTTGCACCACGTGGTGAGTGCCCCGTTGT
AG
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