EsuBft1015_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1015_6a-0001
Unique Name	EsuBft1015_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_544	contig	Scaffold_544:290535..294042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1015_6
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	276
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1015_6a	EsuBft1015_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_544 290535..294042 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1015_6a-0001	EsuBft1015_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_544 290535..291519 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1015_6a-0001-exon	agat-exon-13110	Ectocarpus subulatus male Bft15b	exon	Scaffold_544 290535..290644 +
EsuBft1015_6a-0001-exon	agat-exon-13109	Ectocarpus subulatus male Bft15b	exon	Scaffold_544 290907..293250 +
EsuBft1015_6a-0001-exon	agat-exon-13108	Ectocarpus subulatus male Bft15b	exon	Scaffold_544 293376..293430 +
EsuBft1015_6a-0001-exon	EsuBft1015_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_544 293787..294042 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1015_6a-0001-cds	EsuBft1015_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_544 290535..290644 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1015_6a-0001-exon	agat-three_prime_utr-162	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_544 291520..293250 +
EsuBft1015_6a-0001-exon	agat-three_prime_utr-163	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_544 293376..293430 +
EsuBft1015_6a-0001-exon	agat-three_prime_utr-164	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_544 293787..294042 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_544:290535..294042+
coding sequence from alignment at Scaffold_544:290535..294042+

spliced messenger RNA

>EsuBft1015_6a-0001 ID=EsuBft1015_6a-0001|Name=EsuBft1015_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2765bp|location=Sequence derived from alignment at Scaffold_544:290535..294042+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTTCG
GGACGCCGCTGAACTTCTCCAGAAAGCATTGGCCAGCGTCACCGCCCAAG
ACATCGCCAGGTGCTTTGTCGAAGCCGAGACGCTTCCGGAGGAGGTGGCG
GCTGAGCTCACCAAGCAACACGGGAAGACCCGGTTCAACGTCGCCGAGCC
TGACCTGAAGGCTCTCGCAGAGACTGTCAACATGTTGAGCACCAACGTGC
AAGGCGCGCAGAAGCAGGGATCCCGCGTCGTGGACGAGGAGATCAGCGAA
CTGTTGGCAGAACTCAACATCGAACCCGAAAAGCCGGTCGCGGGGGAAGC
GTTGGCCGCGATTCAGGGGTGGGCTACCATCGAGGACGACGAGGAGGTGG
TAGAGGCTCTTCGATTGGACGCGGTGGCAGACATGACAGCACTGCTGGCT
GGAACGAACTTGTCTACCGGCGGCGACGACGAGGAAGACGAACAGGACCA
GGGCGGTGGCGGTGAGAACACGGGGCGCGAGCGCCGTGCCCCACGTGCGC
CACCGGGTTATGAAGAACTGCCGTCTCACTTCGGCGCCCTGGAATTGGCA
GCAGAGGACAATGGCAACGGAGACGCGGCGTTCTACCGAACGAAAGCGAA
GATGTCGATGATCGCAGCGCATTCCGCTAGGCGGGAGCGCCAGACGGGCA
TTAGAGGATTCGTCGCGACGTAGAGATCATGGTTGTTTCTTTTTATTGCG
GTTCGCTTCCTGTCGTGTACTTGTAGTTTTTTTTTTTTCCGTGGAACATC
GAGGCGGGTACGCCAGGCAGACACTCCAGTGTCGCGACGTAGTTTGGGGG
CGAGATACAACTGTAGTGCAGTAGTATTGATTTTTGTTTTCTTACAGTGC
GCTTCCTGTCGTGTTTCTTTTTCTGTTTTGTCTTTTGTATCTTGCAACAT
CGAAGGAGGGGCTCTAGGGCTGAGATATAGCTACGTCAACTCTGTACGAA
CGGGAGCTTTACAAGCATCTTGCCGTCAACAGCAGTTCCGACAGTTCAGG
GTGTGCAGTACAGTGCATGTGCTGAGGCAGGCAGATAATAACGGTGCAAC
ATGCGAGTGTGAAATATTTTTCACAACTCGCCCTCTGTGTGCGACAGGGG
GGAACCATACCTGTCGCGAGAAAGGATGCCTACGCCCACGAAAGACCTTT
ACTAAGTTTGATCCATTTCGTACTCTGTTAGCCCCGCAACACATGAGCGC
CACAGCATGAAATCAAACATCGCCTCAATAGTGCCGGACCGGCTCTATTG
AGGGATATTCGAAACCTCGAAAGCGCAGAATCGGCACTATGGAGGCCCTA
TTCTGATTAGTGCCGGTGCCCTCAATAGTGACGATATCATCTCTGAACAC
ATACCGGCACTATAGCGGGCCCAGTACTGTATGTGACTTCCCCGGATCTT
CCGAGTTATTTTTTCAACTGGGCGAAGAGACCGCTGACATCATCAAGGCT
GCTGTGGAACACACGCGCTTTTCAACCACCGTCTCCCGTTCTCTACACAC
ACCTACCTACTGGCATCTCCCGCATTCACACGAGTGCACATGGCCGCATC
AACACGCCACTCCCTTTTCACACAAACAATTGCTACATAGCAGCAGACAA
ACACACATCAGGGGTCTCATCGGTGACTGCTGTAGGTGCTGGGCGTGAAC
TGGGGCTCAATCGAGAGAGGCAGACACCGTTGTCTTCACCCCGCACTGCT
GCTGCTGTGAACTGAACATGGGTATCCACATGGCATAGCTCTAGTATTAT
CACTGCTGTCCGCCCCCGGCCGAAGCAGCACACCCCGCCCGCGAGGCATG
GCACCTGCTAACGTTCCACTCAGTGCTCCTCCGTTGGGAGCGACGAGACA
TATCCACGCTGCCAACACGGGGCAACAGGGCCGCAGGCCGAACCCGAGAT
CAACACCCTTGCGGAAAGGAGGACCGTCGCGCAGCAGCACCCCGGTCTCT
GCGGGTACCATCACTCTCGCTGCCTCGAGGCGGTCGACCATTGCCAAGGC
AGCCGAGAGGAGCTCAGGAGGGGCGGTCACGACGAAGCGTTTACGGAATC
AAGTGAGTCGCGAAAGTACCACCCCGATAAGTGTATGTTGCCTGTAGCTG
GCTGGCTGGCTCTAGCCCCAACACGTATGCATCGCAGGAGAATGTCTTTC
ATGTGAGGATTCTGTACGACATCGAAATAGTCTCGTGCATGTTGTTCGCG
TCTTCGTGCGTTCCAACATGTGGACATGTAGAGAAAAATACATGTATATG
CTTACGCCCCTTGTCTATTTACTGTAGAACTCTTTTTTCATCTTGCTACA
AGAGGAAGCCTACATTTATTTGTGTAGTACATGCTCGAAATCATCACATC
CTGCATGTTGTGACGGGTGCAAGAGTGCCCATGGCAGCTGCTAGAGAATG
CGAGCTGCGAGAGCGAAGTCATGACCACACGAAGTGAAAAGGAGAGAGGG
ACAAGCGACGCTTCGTTCGACACGAGCATTCAGATGAATGCAAAGGGTCG
CGGCGTGCAGATCACGAGGAGCGACTGCTTCACGCAGGCGTGCCGCCAGT
GTGGGCGGGAAATAAACCCGTGCCAGCGGCCATTGCAGACGCATTCCTGT
CGTGATATTTGGTGGTGTGTGATAGGCTGTTCATGGGGCGTGAGGGATGG
GGTGTGTGCTGGACGACTTCTTACTCACGAGGATTTGGAAGAATTGCGCG
TCGATATCCATGAAC

protein sequence of EsuBft1015_6a-0001

>EsuBft1015_6 ID=EsuBft1015_6|Name=EsuBft1015_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=240bp
MKAGTMGLAQGHQPHVRDAAELLQKALASVTAQDIARCFVEAETLPEEVA
AELTKQHGKTRFNVAEPDLKALAETVNMLSTNVQGAQKQGSRVVDEEISE
LLAELNIEPEKPVAGEALAAIQGWATIEDDEEVVEALRLDAVADMTALLA
GTNLSTGGDDEEDEQDQGGGGENTGRERRAPRAPPGYEELPSHFGALELA
AEDNGNGDAAFYRTKAKMSMIAAHSARRERQTGIRGFVAT

mRNA from alignment at Scaffold_544:290535..294042+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1015_6a-0001 ID=EsuBft1015_6a-0001|Name=EsuBft1015_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3508bp|location=Sequence derived from alignment at Scaffold_544:290535..294042+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTTCG
GGACGCCGCTGAACTTCTCCAGAAAGCATTGGCCAGCGTCACCGCCCAAG
ACATCGCCAGGTGAGTTTTGAACATGTGATATCGCTGTTTTAAATGTGTA
GCTCGCGCAAGTGCGCATTGCTTTGGTGGTACGTTACGTGGGTAAGGTTG
TACGGATAGGTTTTTTTTTCGACTGAATATTCCCCCAACTGCAAATCTGC
TTGTTTCTTTGCTAAAAAAAGGCGCTCTCTCGCATCCCTATGAGTCATTG
TCACTGGGTTCGTCAAACACCGCTCCTCCACCCAAACACGGATGCATCAC
AATTTCTGCGCTACCTGGCCAGGTGCTTTGTCGAAGCCGAGACGCTTCCG
GAGGAGGTGGCGGCTGAGCTCACCAAGCAACACGGGAAGACCCGGTTCAA
CGTCGCCGAGCCTGACCTGAAGGCTCTCGCAGAGACTGTCAACATGTTGA
GCACCAACGTGCAAGGCGCGCAGAAGCAGGGATCCCGCGTCGTGGACGAG
GAGATCAGCGAACTGTTGGCAGAACTCAACATCGAACCCGAAAAGCCGGT
CGCGGGGGAAGCGTTGGCCGCGATTCAGGGGTGGGCTACCATCGAGGACG
ACGAGGAGGTGGTAGAGGCTCTTCGATTGGACGCGGTGGCAGACATGACA
GCACTGCTGGCTGGAACGAACTTGTCTACCGGCGGCGACGACGAGGAAGA
CGAACAGGACCAGGGCGGTGGCGGTGAGAACACGGGGCGCGAGCGCCGTG
CCCCACGTGCGCCACCGGGTTATGAAGAACTGCCGTCTCACTTCGGCGCC
CTGGAATTGGCAGCAGAGGACAATGGCAACGGAGACGCGGCGTTCTACCG
AACGAAAGCGAAGATGTCGATGATCGCAGCGCATTCCGCTAGGCGGGAGC
GCCAGACGGGCATTAGAGGATTCGTCGCGACGTAGAGATCATGGTTGTTT
CTTTTTATTGCGGTTCGCTTCCTGTCGTGTACTTGTAGTTTTTTTTTTTT
CCGTGGAACATCGAGGCGGGTACGCCAGGCAGACACTCCAGTGTCGCGAC
GTAGTTTGGGGGCGAGATACAACTGTAGTGCAGTAGTATTGATTTTTGTT
TTCTTACAGTGCGCTTCCTGTCGTGTTTCTTTTTCTGTTTTGTCTTTTGT
ATCTTGCAACATCGAAGGAGGGGCTCTAGGGCTGAGATATAGCTACGTCA
ACTCTGTACGAACGGGAGCTTTACAAGCATCTTGCCGTCAACAGCAGTTC
CGACAGTTCAGGGTGTGCAGTACAGTGCATGTGCTGAGGCAGGCAGATAA
TAACGGTGCAACATGCGAGTGTGAAATATTTTTCACAACTCGCCCTCTGT
GTGCGACAGGGGGGAACCATACCTGTCGCGAGAAAGGATGCCTACGCCCA
CGAAAGACCTTTACTAAGTTTGATCCATTTCGTACTCTGTTAGCCCCGCA
ACACATGAGCGCCACAGCATGAAATCAAACATCGCCTCAATAGTGCCGGA
CCGGCTCTATTGAGGGATATTCGAAACCTCGAAAGCGCAGAATCGGCACT
ATGGAGGCCCTATTCTGATTAGTGCCGGTGCCCTCAATAGTGACGATATC
ATCTCTGAACACATACCGGCACTATAGCGGGCCCAGTACTGTATGTGACT
TCCCCGGATCTTCCGAGTTATTTTTTCAACTGGGCGAAGAGACCGCTGAC
ATCATCAAGGCTGCTGTGGAACACACGCGCTTTTCAACCACCGTCTCCCG
TTCTCTACACACACCTACCTACTGGCATCTCCCGCATTCACACGAGTGCA
CATGGCCGCATCAACACGCCACTCCCTTTTCACACAAACAATTGCTACAT
AGCAGCAGACAAACACACATCAGGGGTCTCATCGGTGACTGCTGTAGGTG
CTGGGCGTGAACTGGGGCTCAATCGAGAGAGGCAGACACCGTTGTCTTCA
CCCCGCACTGCTGCTGCTGTGAACTGAACATGGGTATCCACATGGCATAG
CTCTAGTATTATCACTGCTGTCCGCCCCCGGCCGAAGCAGCACACCCCGC
CCGCGAGGCATGGCACCTGCTAACGTTCCACTCAGTGCTCCTCCGTTGGG
AGCGACGAGACATATCCACGCTGCCAACACGGGGCAACAGGGCCGCAGGC
CGAACCCGAGATCAACACCCTTGCGGAAAGGAGGACCGTCGCGCAGCAGC
ACCCCGGTCTCTGCGGGTACCATCACTCTCGCTGCCTCGAGGCGGTCGAC
CATTGCCAAGGCAGCCGAGAGGAGCTCAGGAGGGGCGGTCACGACGAAGC
GTTTACGGAATCAAGTGAGTCGCGAAAGTACCACCCCGATAAGTGTATGT
TGCCTGTAGCTGGCTGGCTGGCTCTAGCCCCAACACGTATGCATCGCAGG
AGAATGTCTTTCATGTGAGGATTCTGTACGACATCGAAATAGTCTCGTGC
ATGTTGTTCGCGTCTTCGTGCGTTCCAACATGTGGACATGTAGAGAAAAA
TACATGTATATGCTTACGCCCCTTGTCTATTTACTGTAGAACTCTTTTTT
CATCTTGCTACAAGAGGAAGCCTACATTTATTTGTGTAGTACATGCTCGA
AATCATCACATCCTGCATGTTGTGACGGGTGCAAGAGTGCCCATGGCAGC
TGCTAGAGAATGCGAGGTACTTGGTCGCGGAAGAACGGCGATACACACGT
GAGCAGTGTTTCATTTGTGTGCACTAGAAGGTTAATGTATGTAAAATTCG
AACTTCAATGGCGACATGCGGTATGGCGTGGATCAAGGCAGCTGCGAGAG
CGAAGTCATGACCACACGAAGTGAAAAGGAGAGAGGGACAAGCGACGTCG
GCGATTCCACCCCCAACCCTAATAGAATGCTCCAGCAGTGCTGTCGAAAC
ACATACATATGGTGCGCAACACGTCGATACCCCGGGGCATGCCGAGAGAT
AGGGTGGTATCTCCTGTATCATGGAACGGGGAGAGTCCGTCGAAGGCAGA
AAAGGAGTAACCCCGTTGTCGAGGGACCGAAAATATCCTTCATGTAGTTC
GAAAGGAGGAACGTCCACATTGCGTGTACGCGTCCGTCCCTCACAGGCTA
CTGAAGCTATCGTTCGTTAGCTCTCGATTCTTCCCCAACGAACTGGAGTA
CACTCTGAAACCGACAACCGACATCCATGTTTTTCCTGCCCACGATGTGC
AGGCTTCGTTCGACACGAGCATTCAGATGAATGCAAAGGGTCGCGGCGTG
CAGATCACGAGGAGCGACTGCTTCACGCAGGCGTGCCGCCAGTGTGGGCG
GGAAATAAACCCGTGCCAGCGGCCATTGCAGACGCATTCCTGTCGTGATA
TTTGGTGGTGTGTGATAGGCTGTTCATGGGGCGTGAGGGATGGGGTGTGT
GCTGGACGACTTCTTACTCACGAGGATTTGGAAGAATTGCGCGTCGATAT
CCATGAAC

Coding sequence (CDS) from alignment at Scaffold_544:290535..294042+

>EsuBft1015_6a-0001 ID=EsuBft1015_6a-0001|Name=EsuBft1015_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=723bp|location=Sequence derived from alignment at Scaffold_544:290535..294042+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTTCG
GGACGCCGCTGAACTTCTCCAGAAAGCATTGGCCAGCGTCACCGCCCAAG
ACATCGCCAGGTGCTTTGTCGAAGCCGAGACGCTTCCGGAGGAGGTGGCG
GCTGAGCTCACCAAGCAACACGGGAAGACCCGGTTCAACGTCGCCGAGCC
TGACCTGAAGGCTCTCGCAGAGACTGTCAACATGTTGAGCACCAACGTGC
AAGGCGCGCAGAAGCAGGGATCCCGCGTCGTGGACGAGGAGATCAGCGAA
CTGTTGGCAGAACTCAACATCGAACCCGAAAAGCCGGTCGCGGGGGAAGC
GTTGGCCGCGATTCAGGGGTGGGCTACCATCGAGGACGACGAGGAGGTGG
TAGAGGCTCTTCGATTGGACGCGGTGGCAGACATGACAGCACTGCTGGCT
GGAACGAACTTGTCTACCGGCGGCGACGACGAGGAAGACGAACAGGACCA
GGGCGGTGGCGGTGAGAACACGGGGCGCGAGCGCCGTGCCCCACGTGCGC
CACCGGGTTATGAAGAACTGCCGTCTCACTTCGGCGCCCTGGAATTGGCA
GCAGAGGACAATGGCAACGGAGACGCGGCGTTCTACCGAACGAAAGCGAA
GATGTCGATGATCGCAGCGCATTCCGCTAGGCGGGAGCGCCAGACGGGCA
TTAGAGGATTCGTCGCGACGTAG