EsuBft2436_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2436_3a-0001
Unique NameEsuBft2436_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:205037..205351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LKC9
ProteomeIdEsuBft2436_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length31
Hectar predicted targeting categoryother localisation
Evalue4.64e-27
EggNOG OGsCOG5253@1|root,KOG0229@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
EC2.7.1.68
Description1-phosphatidylinositol-4-phosphate 5-kinase activity
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_3aEsuBft2436_3aEctocarpus subulatus male Bft15bgeneScaffold_544 205037..205351 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_3a-0001-exonEsuBft2436_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 205037..205351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_3a-0001-cdsEsuBft2436_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 205037..205351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_3a-0001EsuBft2436_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 205037..205351 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2436_3a-0001 ID=EsuBft2436_3a-0001|Name=EsuBft2436_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=315bp|location=Sequence derived from alignment at Scaffold_544:205037..205351- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGGGAGTGGCAAACATCATTACAAAGACGCGAAAGCCTTAAGGCT
AGATGTGGCGGCCATGTTCTCGGCAGCTGGCCGTAGCTTTCATTCCGGAA
AGGGAGGCGGCAGGCAGAAGAAGTACATCTGCAATGGCCCCGCAGGAGGA
TGCCAGGCGACCGTGCGCGCCTGCAGGCAGAGGTCGGGAGAGTCCAAGGT
GACGTTCTTCATCCCGGAACACAACGACTGCTCTGGCGGCAAGGTCGGAG
CGAAAGCGGCTGCGCTCGAGGGCTTCGCCAGTGCCGCCCTCCTTGTTGCA
CGGTGCATGTTGTAA
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protein sequence of EsuBft2436_3a-0001

>EsuBft2436_3 ID=EsuBft2436_3|Name=EsuBft2436_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=104bp
MLGSGKHHYKDAKALRLDVAAMFSAAGRSFHSGKGGGRQKKYICNGPAGG
CQATVRACRQRSGESKVTFFIPEHNDCSGGKVGAKAAALEGFASAALLVA
RCML
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mRNA from alignment at Scaffold_544:205037..205351-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2436_3a-0001 ID=EsuBft2436_3a-0001|Name=EsuBft2436_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=315bp|location=Sequence derived from alignment at Scaffold_544:205037..205351- (Ectocarpus subulatus male Bft15b)
ATGCTGGGGAGTGGCAAACATCATTACAAAGACGCGAAAGCCTTAAGGCT
AGATGTGGCGGCCATGTTCTCGGCAGCTGGCCGTAGCTTTCATTCCGGAA
AGGGAGGCGGCAGGCAGAAGAAGTACATCTGCAATGGCCCCGCAGGAGGA
TGCCAGGCGACCGTGCGCGCCTGCAGGCAGAGGTCGGGAGAGTCCAAGGT
GACGTTCTTCATCCCGGAACACAACGACTGCTCTGGCGGCAAGGTCGGAG
CGAAAGCGGCTGCGCTCGAGGGCTTCGCCAGTGCCGCCCTCCTTGTTGCA
CGGTGCATGTTGTAA
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Coding sequence (CDS) from alignment at Scaffold_544:205037..205351-

>EsuBft2436_3a-0001 ID=EsuBft2436_3a-0001|Name=EsuBft2436_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=315bp|location=Sequence derived from alignment at Scaffold_544:205037..205351- (Ectocarpus subulatus male Bft15b)
ATGCTGGGGAGTGGCAAACATCATTACAAAGACGCGAAAGCCTTAAGGCT
AGATGTGGCGGCCATGTTCTCGGCAGCTGGCCGTAGCTTTCATTCCGGAA
AGGGAGGCGGCAGGCAGAAGAAGTACATCTGCAATGGCCCCGCAGGAGGA
TGCCAGGCGACCGTGCGCGCCTGCAGGCAGAGGTCGGGAGAGTCCAAGGT
GACGTTCTTCATCCCGGAACACAACGACTGCTCTGGCGGCAAGGTCGGAG
CGAAAGCGGCTGCGCTCGAGGGCTTCGCCAGTGCCGCCCTCCTTGTTGCA
CGGTGCATGTTGTAA
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