EsuBft733_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft733_5a-0001
Unique NameEsuBft733_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:105259..106798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft733_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length40
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft733_5aEsuBft733_5aEctocarpus subulatus male Bft15bgeneScaffold_544 105259..106798 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_5a-0001-exonagat-exon-57185Ectocarpus subulatus male Bft15bexonScaffold_544 105259..105558 -
EsuBft733_5a-0001-exonEsuBft733_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 106699..106798 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_5a-0001-exonagat-three_prime_utr-20839Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 105259..105403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_5a-0001-cdsEsuBft733_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 105404..105558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_5a-0001EsuBft733_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 105404..106798 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft733_5a-0001 ID=EsuBft733_5a-0001|Name=EsuBft733_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=400bp|location=Sequence derived from alignment at Scaffold_544:105259..106798- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTTGTTGGGAACGCTGATATCGCGGTGACGTCTCCTCGATCGTC
CTACTCGGCGCTAGCGGCCGCCCGCGGAGGGTCGTCTACACAGAGATACG
GAGGGATTTCATGCACAGAGCAGGTCAACGAGCCGGAGTTTCACTGCCTC
GAGTGCGCCAAGAACGAGTGGAAGGTGGACCAGGTCAAGAATCCCACCGA
GTGGGACAACATTTACCACCTTGTTGAGAGCAATCGAGCGCGCTGTAAAG
GGTAGACTAGACATAGGTGCATAGTATCCTGTCCCCCAACAGGGAATCCC
ATTTGGAGAGAGGGACTTGGGACATGACTACCTTCTTGCCTGCCACATTC
TAGTAGAGCTTCATATACCATCCTGTGTTTAGGCCGGGAGCAGGGATTCT
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protein sequence of EsuBft733_5a-0001

>EsuBft733_5 ID=EsuBft733_5|Name=EsuBft733_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=84bp
MMLVGNADIAVTSPRSSYSALAAARGGSSTQRYGGISCTEQVNEPEFHCL
ECAKNEWKVDQVKNPTEWDNIYHLVESNRARCKG
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mRNA from alignment at Scaffold_544:105259..106798-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft733_5a-0001 ID=EsuBft733_5a-0001|Name=EsuBft733_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1540bp|location=Sequence derived from alignment at Scaffold_544:105259..106798- (Ectocarpus subulatus male Bft15b)
ATGATGCTTGTTGGGAACGCTGATATCGCGGTGACGTCTCCTCGATCGTC
CTACTCGGCGCTAGCGGCCGCCCGCGGAGGGTCGTCTACACAGAGATACG
GTGAGCAACCACTTTGCAGGATGGATACCGCCATACCCCGAAATGCGCCC
AAAGCTAGTGGTCGGGATGGAGTATACAGCTCTGGTGGTGACCCGTAGAC
AAACGGGAAGATTCGCGGATTTCCGGGTTGATGCCGTGGTATCCAAAACA
CATGCAAGAACATTGTTGTTCTACGAAACGGTCCGTGCACGTCATTGGGT
ATATCCGTGGGCGTCCGTGGATGTCCACGCATACGCATTGACACGTCCGT
CATCGTGAACAGGGACACTCCAGCAAACTTCCAACCACAAGTCTGGGGAC
GCCCTTCCTGAGATGTTCATAGACATGCCGTAACACGCGGACGCCCGTGC
GTGGTCCACGTTGGTATTGTAGACTACACAGCCAAATTGTTCATGAACAA
AGGGAGGTCTGCGTGCGCGCCCTCGGATATACGTGGAAGAACAATAATTG
CGCATGTCCACGGGTATGTCGAGGTTCGACGAACTCAGACCGTTCATCAA
CGTTCTTCAGCGTCCATGAAGACGATGTGGACTATATTCATCAAGCGAAC
GGTCCGTGGATATCCGTAGCTGTCCATGGAAAAGTCCAAACAACCGGCCC
GAAGATGTCCGTTTCAACTCATGGAAAAGTTCGCGGCGGTCCGTGAAAGC
ATCCATGGACGTCCGAGATCCATGAACACCGTCGACGGGTGGGTCAACGG
ACGCCCACCAGGCGTGAAAGAGACAAAACCGCTCCTTGTCGAAACATCAA
GCTGTCTCTTTCACCTCAGGACTCATCAAAACAAAACTCGTCGCGGAGAC
GCCAAACAATGTTTTTGATGTTGCGGGTGATACTTATTTTGCACTCGAGC
CAACTCTCACCTTCACTGCCTTCGCTGGTTTGCCCTGATCACTACCGTTG
CTGGCAAGAATGAATGACGACCAGGTGCTTCCTCTGCGCTCGTCATGGCT
CTCCTTCCTTGGAAAATATATATGCAAAAGGCTGTGATTGAAACCGCGAC
GGAAACGAAGCACAAATGCGCCTCACTGGGTACACGCACCGTGCATGATG
TTGTCAGACCTTACTCCTGCTGAAACTGTTTGGTTCATTGTAAAGGTATG
ACTCTCGCTTTCTGCTTTCGTATGTACTTGAACACTGCAGGAGGGATTTC
ATGCACAGAGCAGGTCAACGAGCCGGAGTTTCACTGCCTCGAGTGCGCCA
AGAACGAGTGGAAGGTGGACCAGGTCAAGAATCCCACCGAGTGGGACAAC
ATTTACCACCTTGTTGAGAGCAATCGAGCGCGCTGTAAAGGGTAGACTAG
ACATAGGTGCATAGTATCCTGTCCCCCAACAGGGAATCCCATTTGGAGAG
AGGGACTTGGGACATGACTACCTTCTTGCCTGCCACATTCTAGTAGAGCT
TCATATACCATCCTGTGTTTAGGCCGGGAGCAGGGATTCT
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Coding sequence (CDS) from alignment at Scaffold_544:105259..106798-

>EsuBft733_5a-0001 ID=EsuBft733_5a-0001|Name=EsuBft733_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=255bp|location=Sequence derived from alignment at Scaffold_544:105259..106798- (Ectocarpus subulatus male Bft15b)
ATGATGCTTGTTGGGAACGCTGATATCGCGGTGACGTCTCCTCGATCGTC
CTACTCGGCGCTAGCGGCCGCCCGCGGAGGGTCGTCTACACAGAGATACG
GAGGGATTTCATGCACAGAGCAGGTCAACGAGCCGGAGTTTCACTGCCTC
GAGTGCGCCAAGAACGAGTGGAAGGTGGACCAGGTCAAGAATCCCACCGA
GTGGGACAACATTTACCACCTTGTTGAGAGCAATCGAGCGCGCTGTAAAG
GGTAG
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