EsuBft5897_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5897_2a-0001
Unique NameEsuBft5897_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_54contigScaffold_54:130860..132964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIV2
ProteomeIdEsuBft5897_2
Protein domainsCoil
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length147
Evalue1.66e-45
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5897_2aEsuBft5897_2aEctocarpus subulatus male Bft15bgeneScaffold_54 130860..132964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5897_2a-0001EsuBft5897_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_54 130964..132942 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5897_2a-0001-exonagat-exon-68231Ectocarpus subulatus male Bft15bexonScaffold_54 130860..130993 -
EsuBft5897_2a-0001-exonagat-exon-68233Ectocarpus subulatus male Bft15bexonScaffold_54 131041..131459 -
EsuBft5897_2a-0001-exonagat-exon-68232Ectocarpus subulatus male Bft15bexonScaffold_54 131600..131717 -
EsuBft5897_2a-0001-exonagat-exon-68230Ectocarpus subulatus male Bft15bexonScaffold_54 131781..132173 -
EsuBft5897_2a-0001-exonagat-exon-68234Ectocarpus subulatus male Bft15bexonScaffold_54 132356..132593 -
EsuBft5897_2a-0001-exonEsuBft5897_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_54 132671..132745 -
EsuBft5897_2a-0001-exonagat-exon-68235Ectocarpus subulatus male Bft15bexonScaffold_54 132869..132964 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5897_2a-0001-exonagat-three_prime_utr-18830Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_54 130860..130963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5897_2a-0001-cdsEsuBft5897_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_54 130964..130993 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5897_2a-0001-exonagat-five_prime_utr-12001Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_54 132943..132964 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5897_2a-0001 ID=EsuBft5897_2a-0001|Name=EsuBft5897_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1473bp|location=Sequence derived from alignment at Scaffold_54:130860..132964- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGTTTTTGTCTCGCGTGCCTGATGTTCTGCCATATCTACCTCACATTTC
CGCGCGCCCAGACCTACCGAAACTCGACCGGTTTTATCAGAAGGCGGTAC
AAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGCAAGCAGGAGGCGGAAAA
GCGCAAGACGAGCTTCAACGCGTACAAGTGTGCGAAGTGCGCGGAGTTCA
ATAAAGGCAAGCAGGAGGCGGAAAAGCGCAAGACGAGCTTCAACACGTGG
GATGCTGGGTACCTCCGGCGTCTCCCGGAGTACATCTCCAAGGAGTTCCC
TCTCCTTCTCACCAAGCGATCGGGCAGTGAGATTTGCATGGTGGACCGGC
TTGCAGATGATTTGGTGCATGGGAAGGGCTTCTCCGCTGCTGCCAAGAAT
ATTCGTCAGGCGCATACGACCAAGTTCATGGTGGACCAGCTGAAGTACAC
CTCTCTGGTCAACACCCGGCGGACCAGCTCGGGCATCTTCCGCTCGGCCA
ACCTCGCCAAAACTCCGGAGAGGTTCGGCAGCTTTGATGACTCGACAAAG
TACGGCGGTGCGGTCCCGTCGGAGCACTATTTGCGGGACGTGTGGCGGTT
GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
CACAAGACCAGTGTACGGCTCCTTCACAGTCTTCGACGAATGTGAGTAGG
TGCAAATTTCTCCTGTCTCTGCTTCGTTCAACCATCCCCAAACCCTTCTT
GTTGGTGCCATGTTTTCTGGAGCAATCACTGGAAAATTATTCTCGTAGTA
TGGTGGTCTGGCAGCGTCCGATGAAGACCGGTGCCTTGAGCGAGCTGGCG
GAGGAGTTGAAGCTTTTTTTCATGCGATTCGTTCGCAATGGCTTCAAGGT
TCCTACTCTGTGGAACACAGATGACTGCTGTGATGACCTTCAACTGCTGC
AACGCATATTACGCGAGTTTGAGGAGGTAACGGGGATCAGTCTTTATCTG
GAAGACGAGGTGGACGCCGAAGTTCAGTTTGAGCTCCTGCCACAGCTGGA
TATGGAGTTCACCCCTGCCATCGTGTACGACCCGGACGCGGTAGCCGCTG
CCTGCGACTCCCTCAGTCAGAGCATCAGCCAAAATCGAGTGGAGGGAAAG
ATGATGTGCGGAGCGGACGCAGAGTGGCAGTTTTCACCTCGTGGGCGGGA
ACCTGTAGCGACCTTCCAGATTGCGGCTTTGAGGGGGCCGTCGTTCCTCT
TCCACCTGCAGAGAGGGAGCTCTGGTTTTACGAAGGAAACATTTCCCGCT
CCCCTGAAGGCTCTTATCGAGGACCCCAGCACCATCAAGATGTTGTATTC
ATGCAAGTACTGCTCTTGAAAGGTTGGTACGGCGTATTTGAGCATCCGTC
TTGTGAGCGTCTTCCTCATGATACTATTTGAACGCCGACTGGGCGACTCG
ATTTTTCCTCTGTGCAGGCTGGT
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protein sequence of EsuBft5897_2a-0001

>EsuBft5897_2 ID=EsuBft5897_2|Name=EsuBft5897_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=448bp
MFCHIYLTFPRAQTYRNSTGFIRRRYKCAKCAEFNKGKQEAEKRKTSFNA
YKCAKCAEFNKGKQEAEKRKTSFNTWDAGYLRRLPEYISKEFPLLLTKRS
GSEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRR
TSSGIFRSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVWRLXXXXXXX
XXXXXXXXXAQDQCTAPSQSSTNVSRCKFLLSLLRSTIPKPFLLVPCFLE
QSLENYSRSMVVWQRPMKTGALSELAEELKLFFMRFVRNGFKVPTLWNTD
DCCDDLQLLQRILREFEEVTGISLYLEDEVDAEVQFELLPQLDMEFTPAI
VYDPDAVAAACDSLSQSISQNRVEGKMMCGADAEWQFSPRGREPVATFQI
AALRGPSFLFHLQRGSSGFTKETFPAPLKALIEDPSTIKMLYSCKYCS
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mRNA from alignment at Scaffold_54:130860..132964-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5897_2a-0001 ID=EsuBft5897_2a-0001|Name=EsuBft5897_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2105bp|location=Sequence derived from alignment at Scaffold_54:130860..132964- (Ectocarpus subulatus male Bft15b)
TTGTTTTTGTCTCGCGTGCCTGATGTTCTGCCATATCTACCTCACATTTC
CGCGCGCCCAGACCTACCGAAACTCGACCGGTTTTATCAGAAGGCGGTAT
TGGTATGGATACCGGAGTTCTTGTTCCCAGAGCTCCAGGCAGTTCCTTNC
TTCTGGTAAATTGGAGTTCGTGTCGTGGGATATTGCTCGTGGTGTATGTT
TTCTCCCATGCACGTGCAGGTACAAGTGTGCGAAGTGCGCGGAGTTCAAT
AAAGGCAAGCAGGAGGCGGAAAAGCGCAAGACGAGCTTCAACGCGTGGGN
AGATTGGAGTTCGTGTTGTGGTTTTCCGACGATATTGCTCGTGGTGTATG
TTTTCTCCCATGCACGTGCAGGTACAAGTGTGCGAAGTGCGCGGAGTTCA
ATAAAGGCAAGCAGGAGGCGGAAAAGCGCAAGACGAGCTTCAACACGTGG
GATGCTGGGTACCTCCGGCGTCTCCCGGAGTACATCTCCAAGGAGTTCCC
TCTCCTTCTCACCAAGCGATCGGGCAGTGAGATTTGCATGGTGGACCGGC
TTGCAGATGATTTGGTGCATGGGAAGGGCTTCTCCGCTGCTGCCAAGAAT
ATTCGTCAGGTGAATATGCAGTGTCTCATCTGCAGCGTCTTAAGATAACG
GGTTGGTCTGGTCTTGGCTTTCCTAGCCTGTTCAAAACATTTGCGGATGG
TACCGCAAACGTTGCTGCGGGAAACGTCGGATCTCATAAGCGCCGACCCG
TGCTACAACGAAAACGTGTCGCCCTCGCAATGCTGTCGCAGGCGCATACG
ACCAAGTTCATGGTGGACCAGCTGAAGTACACCTCTCTGGTCAACACCCG
GCGGACCAGCTCGGGCATCTTCCGCTCGGCCAACCTCGCCAAAACTCCGG
AGAGGTTCGGCAGCTTTGATGACTCGACAAAGTACGGCGGTGCGGTCCCG
TCGGAGCACTATTTGCGGGACGTGTGGCGGTTGTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAAGACCAGTGTACGG
CTCCTTCACAGTCTTCGACGAATGTGAGTAGGTGCAAATTTCTCCTGTCT
CTGCTTCGTTCAACCATCCCCAAACCCTTCTTGTTGGTGCCATGTTTTCT
GGAGCAATCACTGGAAAATTATTCTCGTAGTATGGTGCGCTCATTCTGAT
GACCCGAAAAACATTTCGTTGTTACACATGTGTGTTCTTATTTGAAGGTG
GTCTGGCAGCGTCCGATGAAGACCGGTGCCTTGAGCGAGCTGGCGGAGGA
GTTGAAGCTTTTTTTCATGCGATTCGTTCGCAATGGCTTCAAGGTTCCTA
CTCTGTGGAACACAGGTAATTTGCGAAATGATTGTAGACTTGCTTCGCTT
TTCGAGGTTGTAGACCGGTGTCAGGCCTGCTATTTTCGCAGTGACTTTGC
AGTATTGTCTCCTCAATCCTTTCCGGCCCCGTTGCGTGACGCTTCACTTT
GTCAGATGACTGCTGTGATGACCTTCAACTGCTGCAACGCATATTACGCG
AGTTTGAGGAGGTAACGGGGATCAGTCTTTATCTGGAAGACGAGGTGGAC
GCCGAAGTTCAGTTTGAGCTCCTGCCACAGCTGGATATGGAGTTCACCCC
TGCCATCGTGTACGACCCGGACGCGGTAGCCGCTGCCTGCGACTCCCTCA
GTCAGAGCATCAGCCAAAATCGAGTGGAGGGAAAGATGATGTGCGGAGCG
GACGCAGAGTGGCAGTTTTCACCTCGTGGGCGGGAACCTGTAGCGACCTT
CCAGATTGCGGCTTTGAGGGGGCCGTCGTTCCTCTTCCACCTGCAGAGAG
GGAGCTCTGGTTTTACGAAGGAAACATTTCCCGCTCCCCTGAAGGCTCTT
ATCGAGGACCCCAGCACCATCAAGGTGAGACAACAGCAACAGCACATGCG
CGTGAGGGTTGAATGCGATAGATGTTGTATTCATGCAAGTACTGCTCTTG
AAAGGTTGGTACGGCGTATTTGAGCATCCGTCTTGTGAGCGTCTTCCTCA
TGATACTATTTGAACGCCGACTGGGCGACTCGATTTTTCCTCTGTGCAGG
CTGGT
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Coding sequence (CDS) from alignment at Scaffold_54:130860..132964-

>EsuBft5897_2a-0001 ID=EsuBft5897_2a-0001|Name=EsuBft5897_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1347bp|location=Sequence derived from alignment at Scaffold_54:130860..132964- (Ectocarpus subulatus male Bft15b)
ATGTTCTGCCATATCTACCTCACATTTCCGCGCGCCCAGACCTACCGAAA
CTCGACCGGTTTTATCAGAAGGCGGTACAAGTGTGCGAAGTGCGCGGAGT
TCAATAAAGGCAAGCAGGAGGCGGAAAAGCGCAAGACGAGCTTCAACGCG
TACAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGCAAGCAGGAGGCGGA
AAAGCGCAAGACGAGCTTCAACACGTGGGATGCTGGGTACCTCCGGCGTC
TCCCGGAGTACATCTCCAAGGAGTTCCCTCTCCTTCTCACCAAGCGATCG
GGCAGTGAGATTTGCATGGTGGACCGGCTTGCAGATGATTTGGTGCATGG
GAAGGGCTTCTCCGCTGCTGCCAAGAATATTCGTCAGGCGCATACGACCA
AGTTCATGGTGGACCAGCTGAAGTACACCTCTCTGGTCAACACCCGGCGG
ACCAGCTCGGGCATCTTCCGCTCGGCCAACCTCGCCAAAACTCCGGAGAG
GTTCGGCAGCTTTGATGACTCGACAAAGTACGGCGGTGCGGTCCCGTCGG
AGCACTATTTGCGGGACGTGTGGCGGTTGTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAAGACCAGTGTACGGCTCC
TTCACAGTCTTCGACGAATGTGAGTAGGTGCAAATTTCTCCTGTCTCTGC
TTCGTTCAACCATCCCCAAACCCTTCTTGTTGGTGCCATGTTTTCTGGAG
CAATCACTGGAAAATTATTCTCGTAGTATGGTGGTCTGGCAGCGTCCGAT
GAAGACCGGTGCCTTGAGCGAGCTGGCGGAGGAGTTGAAGCTTTTTTTCA
TGCGATTCGTTCGCAATGGCTTCAAGGTTCCTACTCTGTGGAACACAGAT
GACTGCTGTGATGACCTTCAACTGCTGCAACGCATATTACGCGAGTTTGA
GGAGGTAACGGGGATCAGTCTTTATCTGGAAGACGAGGTGGACGCCGAAG
TTCAGTTTGAGCTCCTGCCACAGCTGGATATGGAGTTCACCCCTGCCATC
GTGTACGACCCGGACGCGGTAGCCGCTGCCTGCGACTCCCTCAGTCAGAG
CATCAGCCAAAATCGAGTGGAGGGAAAGATGATGTGCGGAGCGGACGCAG
AGTGGCAGTTTTCACCTCGTGGGCGGGAACCTGTAGCGACCTTCCAGATT
GCGGCTTTGAGGGGGCCGTCGTTCCTCTTCCACCTGCAGAGAGGGAGCTC
TGGTTTTACGAAGGAAACATTTCCCGCTCCCCTGAAGGCTCTTATCGAGG
ACCCCAGCACCATCAAGATGTTGTATTCATGCAAGTACTGCTCTTGA
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