EsuBft965_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft965_5a-0001
Unique NameEsuBft965_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_527contigScaffold_527:313517..317739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIH0
ProteomeIdEsuBft965_5
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR10566
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized aarf domain-containing protein kinase chloroplastic os:arabidopsis thaliana gn: [Automatic annotation]
Nb exon8
Max annot lvl2880.D7FIH0|-
Length1401
Hectar predicted targeting categoryother localisation
Evalue8.2e-236
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Ec32 ortholog descriptionABC transporter-like
Ec32 orthologEc-28_000240.1
Date last modified2016-06-13
Date creation2016-06-13
Descriptionregulation of tocopherol cyclase activity
COG categoryE
Cross References
External references for this mRNA
DatabaseAccession
GO0019222
GO0016301
GO0044237
GO0009507
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft965_5aEsuBft965_5aEctocarpus subulatus male Bft15bgeneScaffold_527 313517..317739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_5a-0001EsuBft965_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_527 313517..317715 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_5a-0001-exonagat-exon-50348Ectocarpus subulatus male Bft15bexonScaffold_527 313517..313549 +
EsuBft965_5a-0001-exonagat-exon-50343Ectocarpus subulatus male Bft15bexonScaffold_527 313674..313840 +
EsuBft965_5a-0001-exonagat-exon-50346Ectocarpus subulatus male Bft15bexonScaffold_527 314220..314556 +
EsuBft965_5a-0001-exonagat-exon-50345Ectocarpus subulatus male Bft15bexonScaffold_527 314818..314942 +
EsuBft965_5a-0001-exonagat-exon-50349Ectocarpus subulatus male Bft15bexonScaffold_527 315639..315877 +
EsuBft965_5a-0001-exonagat-exon-50344Ectocarpus subulatus male Bft15bexonScaffold_527 316590..316897 +
EsuBft965_5a-0001-exonEsuBft965_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_527 317422..317541 +
EsuBft965_5a-0001-exonagat-exon-50347Ectocarpus subulatus male Bft15bexonScaffold_527 317668..317739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_5a-0001-cdsEsuBft965_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_527 313517..313549 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_5a-0001-exonagat-three_prime_utr-23571Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_527 317716..317739 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft965_5a-0001 ID=EsuBft965_5a-0001|Name=EsuBft965_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1401bp|location=Sequence derived from alignment at Scaffold_527:313517..317739+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAATGAGAATTGCTGGTTTTGTCAAGTGGTGTTGTGTATGGAGTA
CGTGCAGGGCATCAAGATCAACGATGTGGAGGCCATCGAGAAGGCCGGGG
TGGACCGCGCCTTGCTGGCCACCCGGACGGCCGAGTGCTACCTCGAGCAG
CTCATCCGCCACGGATTCTTCCACTGCGACCCACATCCAGGCAAGCGTCT
GTTGACCGCGTATTCCTGTCCGAAGATTGCGTCACAGACTCCGTCCCCCG
TAATGCTTCGTTCTTCCGTTGCGGAATCGTTCGTGCATTTGTGTCGACAC
CACGGCGGTCGGCCTATCGACGCGCGTCCTTCGCCGGGAATCGGTCACGT
ACGTCAAACAGGGAACCTAGCGTGCGATGCGGTGGACGGCGGTCGCATCA
TCTTCTACGACTTCGGCATGATGGACGAGCTCACGGTGCCGCTGAAGCGA
TCGTTTTCAGACCTGATCTTCGGCATCTACGGCAACGACCTCAAGGAGGT
CGTGGACTCTCTAGAGGAAATGGACGTCATCAGAAAGGGCGCGGACCGCA
TGACGGTGGAGCGAGTAACTCGGTTCTACTTGGGAGAGTTCCAAACCACC
CTCACCAAGGGGGGCAAGTACATTAACCAGCTCGACCCCGAGGAGGAGAA
GGCTCTCATCAGGCGAGAGCGGGCGCAGATCGGGCAGGACCTCTTCTCCG
GGCAGGCGGCGGTGCCCCTTCAGTTCCCCGCGTCGTTCACGTTTGTCTTC
AGGGCCTTCACCACCCTGGACGGCATCGGCAAGACCTTGGATGAGGGGTA
CGACCTCACCAAGATCGCGGGCCCTTACCTGAAGGAGCTGCTTGATTTGA
AGGACGGGAACGCATACGTGTCGTACTTGAAGGGCCTGCAGAAGAAGCTG
GGGTGGCGAGGCCAAGACCTGGCGAGCGTGGTCCAGAGCCCGAGACGAGT
CCAGCACGTGGAGAACGTGGTGACCAAGCTCGAGACCGGGGACCTAAAGC
TCAGGGTTAGGGTGCTCGAGTCGGAGCAGGCGTTTGCGCGGATCGAGGCC
GTGCAGGGCAGCCTGAGCTCGGCGGTGATGGCCACGCTCTTGCTCAACGC
CGGGGTCTTGATGGCGGGGCAGGCGACGGGGGCGGCCAAGTTGAGCTCGC
GAGCGATGTTTGTGCTCGCCGGGTTCTTCGGGATCAAGATTCCCATCGGA
TACTTGAAGCTCGGAACCAGCCAACGCTTCGTTGACTGCATCGACAAACT
TTCTGATCGATCTCAAACGCTATACATACACTTTCCAGAGCCAATATTGT
TTGCTCGCCCCGTGTTGCAGCTCAACAAAGTCTGGCGGTTGAATCGACAA
GCGAGCACATCGAAGGGCTTCCGTTAGCGTTGTAGCGAGGGGAGTTGTTT
T
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protein sequence of EsuBft965_5a-0001

>EsuBft965_5 ID=EsuBft965_5|Name=EsuBft965_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=458bp
MANENCWFCQVVLCMEYVQGIKINDVEAIEKAGVDRALLATRTAECYLEQ
LIRHGFFHCDPHPGKRLLTAYSCPKIASQTPSPVMLRSSVAESFVHLCRH
HGGRPIDARPSPGIGHVRQTGNLACDAVDGGRIIFYDFGMMDELTVPLKR
SFSDLIFGIYGNDLKEVVDSLEEMDVIRKGADRMTVERVTRFYLGEFQTT
LTKGGKYINQLDPEEEKALIRRERAQIGQDLFSGQAAVPLQFPASFTFVF
RAFTTLDGIGKTLDEGYDLTKIAGPYLKELLDLKDGNAYVSYLKGLQKKL
GWRGQDLASVVQSPRRVQHVENVVTKLETGDLKLRVRVLESEQAFARIEA
VQGSLSSAVMATLLLNAGVLMAGQATGAAKLSSRAMFVLAGFFGIKIPIG
YLKLGTSQRFVDCIDKLSDRSQTLYIHFPEPILFARPVLQLNKVWRLNRQ
ASTSKGFR
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mRNA from alignment at Scaffold_527:313517..317739+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft965_5a-0001 ID=EsuBft965_5a-0001|Name=EsuBft965_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4223bp|location=Sequence derived from alignment at Scaffold_527:313517..317739+ (Ectocarpus subulatus male Bft15b)
ATGGCCAATGAGAATTGCTGGTTTTGTCAAGTGGTAAGTCTCGTGTGGTG
AACGTTTGATTGACGACCAAGAAGACCATGTCTGGCAACATTGATATGTC
GGCGGTTGCGGCGGCGGTGACGGCGACGGCATTATACTATCACTTTCAAC
GCCGCAGGTGTTGTGTATGGAGTACGTGCAGGGCATCAAGATCAACGATG
TGGAGGCCATCGAGAAGGCCGGGGTGGACCGCGCCTTGCTGGCCACCCGG
ACGGCCGAGTGCTACCTCGAGCAGCTCATCCGCCACGGATTCTTCCACTG
CGACCCACATCCAGGCAAGCGTCTGTAGGGCAGGAGAGTTTGGCAGTTGG
CTTGGTTGGCGAAGATGCGTTGCTGAGCCCGTTGTTTTTGTCTCAGCCAA
ACCCTCAACTTCGATAGATGACGAGGAGACGTTTATTTTCTAATACGAAG
CTTGTGTCGTTCTTTCAGACGGAGAAACAAGCCGGGAACGCGTCGGTTCT
TACGACGGCAGCAAAGAGGCTGTATTACGATTTTTGAGGCCTCTTTTTTC
AATTGGAACGTCCTGTCGGGGGAGTGTGATTGGCCAAGCGTTTTTGAGCA
GTCACGACCGGAGGCTTCTACACCTCTTTGTCTCCGGATGCCACCGACTC
CTGGCGATGACCGACGAATACCACCAGACATGTATTGGCTTCGTTTCTCT
CAGGTTGACCGCGTATTCCTGTCCGAAGATTGCGTCACAGACTCCGTCCC
CCGTAATGCTTCGTTCTTCCGTTGCGGAATCGTTCGTGCATTTGTGTCGA
CACCACGGCGGTCGGCCTATCGACGCGCGTCCTTCGCCGGGAATCGGTCA
CGTACGTCAAACAGGGAACCTAGCGTGCGATGCGGTGGACGGCGGTCGCA
TCATCTTCTACGACTTCGGCATGATGGACGAGCTCACGGTGCCGCTGAAG
CGATCGTTTTCAGACCTGATCTTCGGCATCTACGGCAACGACCTCAAGGA
GGTCGTGGACTCTCTAGAGGAAATGGACGTCATCAGAAAGGTCAGCTGGA
ATGGACATTCATTCTTCGTAATACTTCTCCCGGATTAGTGGTGGCGGTGG
TGGTAGTCATGCACGGCAGTGTGAAGTTCTCAAGTGCCGCACACGTGGGT
GGTGAACGGCACATAAACGGTCGTGGCTTGCGCGAAGGAATGGCGCGGTA
TTGTTGTGGTGCGGTGTGGTGCAAATCCGCTTTTCGCTTGCTCATGTGCG
AGAACCTTGTTTGATCCTGCGGACCTCTTCCGGCGCCACGCTTGTGGCCA
GGGCGCGGACCGCATGACGGTGGAGCGAGTAACTCGGTTCTACTTGGGAG
AGTTCCAAACCACCCTCACCAAGGGGGGCAAGTACATTAACCAGCTCGAC
CCCGAGGAGGAGAAGGCTCTCATCAGGTATGCATACATGCAGTCGAATCG
TTAGTCGTCCGCCTTTGCCCTTCGTTGCCGGTGTTGGTTGCTCTTGTTGT
GTCATCCTTCGATAATAGTGTTCGTTTGTTAACGATAGACAAATGCTCTT
ACCTTTCCGCTGTTGCTTGATTCAACTTGTCAAGCTGCTACACGACACAT
ACGTTCATATTGTATGCTTCAGTTACACCCACCCCACGCTGTATACCAGT
GTATCCCATCTTGGAATGTCTTGGTGCTTTATCCTGGCGTGACACAACCT
GTCTCATTGAATTTAGCCCATCTGGCGTCCCAAACAAGAAGCAACGCCGG
CCTCAGATTCATTAAAACCCTGTGACCTCTCGTGGCAAGCGTTGTTCGGG
CACGCCCTGAGGAATGAGATCCGTCGCCGATCAGATGCGCGGTATACGCG
GTCCGCTTTTTCTCACGGCCATCATTTGTCGTGCTTTTCGCCCGGCGTGA
GAGATAAATCTTCGTGTGCCCTCACCACCACTTCTCGATCTTTCGTGCGC
GGTGCTGCTACCACCCTCTGTCGATTTTTGTCTTGGAGCTCTCCACGTCG
CCCAGCGAGGGAACCAGCACAACATGTGGCGTGACGCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCNNNCCCCCCCCCCCGCGTGCGCGTTCGTC
CGTCCGTCCGTCCTGCAATCAGGCGAGAGCGGGCGCAGATCGGGCAGGAC
CTCTTCTCCGGGCAGGCGGCGGTGCCCCTTCAGTTCCCCGCGTCGTTCAC
GTTTGTCTTCAGGGCCTTCACCACCCTGGACGGCATCGGCAAGACCTTGG
ATGAGGGGTACGACCTCACCAAGATCGCGGGCCCTTACCTGAAGGAGCTG
CTTGATTTGAAGGACGGGAACGCATACGTGTCGTACTTGAAGGGCCTGCA
GAAGAAGCTGGGTGAGAGAGATAGAGAAAGACCTTGCAGCAGGTCGCCTT
TTTTGTGGAGTGGTATGTTGTATGTGTGTTTTGTGGCGTACTTGAAGGGC
CTGCAGAAGAAGCTGGGTGAGAGAGATAGAGAGAAAGACCTTGCAGCAGG
TCGCCTTTTTTGTGGATTGGTATGTTGTATGTGTGTTTTGTGGCGTACTT
GAAGAGGGTGGTGGCGACGCACGGTGGTGTGTTGCCGCTGCCAATTCCGT
GGCTTCTGCTGTTCTGGGGGAGAAGACAAGTGGGCGACAGATGCCGTCGG
AGTCCAGGCCTTGCGGCACGGCGGTGTTTTCTTGTTGTCAAGTGTTGTTT
GACGGTTGCTGCTTTTGCCTATGTCGTGGCGTGTGTTTTTGTGTGAAAGA
GGAGGCGCAAGATGCCAGGCGAACCGTGGGGAAATGGGGGCAAATCGGCA
CGGCTGCATCAAGCAACCTTCAACTGGACGAGGAAAAAACATGAGAGATG
GCCTACCCTTCGTTCTCCGCACGTGGTGACCCCGTCAGCTATCTAGTGAA
AAAAACATGATATGGCATGATGCGCACAAGCCGCCTAGGGGAGCAGGCCG
TTTCGGGCGTGCGGATGCGGCCGCTCCTCGTACTACTTGTGGGCTGTTTC
GACTGTTTAACGCTGTAGCGACCGGCCTAAACGATCGATCTTCTTGTTCG
GTCGCGTTCTTGTTTTCTCGCAGGGTGGCGAGGCCAAGACCTGGCGAGCG
TGGTCCAGAGCCCGAGACGAGTCCAGCACGTGGAGAACGTGGTGACCAAG
CTCGAGACCGGGGACCTAAAGCTCAGGGTTAGGGTGCTCGAGTCGGAGCA
GGCGTTTGCGCGGATCGAGGCCGTGCAGGGCAGCCTGAGCTCGGCGGTGA
TGGCCACGCTCTTGCTCAACGCCGGGGTCTTGATGGCGGGGCAGGCGACG
GGGGCGGCCAAGTTGAGCTCGCGAGCGATGTTTGTGCTCGCCGGGTTCTT
CGGGATCAAGATTCCCATCGGATACTTGAAGGTGAGAGACACCGCAAAAT
GCTAAGCTTTGAAAATTGGGGGGGGTATTTTTTCTTCTTTTCTTTGAATA
TATTTTTCTTGCGAAACACAACAGATTCACGTCTTCAGAGATAAAGAGTC
CGGAGATTGTAGTCCCTCTGGTGTGAGCTCATGAGGGCATAGCAGTGTCA
TCAATGGGGGATGCAAGATGAAAATGCAAGGAGGCAGTAGGACCAATAGT
GTTGTCCAACTTTTTTTTTTTCTTTCTTATCTGAGTGCGTGTGGTTGGAG
AATCCTTATTAGCGTGTTGCGGCCTTTTGGTGTTGGCCTTGCCCTCGATT
GTTGCTGTGTTGGCGTTAGGAAAAAGATCTCCTCCATGTGAGAGTTGAGC
GAATGTTTGCACCAGAAAGTCGGGGGAGTCTTTCCTGTGTCTCGAGTAGG
CAAGAGCGCGTTTTCGCTTGCAGCGCTGGTTTTGCGTTCACGTACGCTGG
TGCTGCTGCCCCTGTGCTGCGGCCGTTCTGCTTGTGGTGCAATTTGTCGC
CCCAGCTCGGAACCAGCCAACGCTTCGTTGACTGCATCGACAAACTTTCT
GATCGATCTCAAACGCTATACATACACTTTCCAGAGCCAATATTGTTTGC
TCGCCCCGTGTTGCAGCTCAACAAAGTACGTCATGAAATGAAGAATAAGA
GTCAGTGTTGGCCATTCGCTGTATCTGTAGTTCCGGCGCGTACTGATGAC
CCGATGTCCTTCCGCCTTTGCATTCCTTTGTGCTGCACGGATCTATTGCA
GGTCTGGCGGTTGAATCGACAAGCGAGCACATCGAAGGGCTTCCGTTAGC
GTTGTAGCGAGGGGAGTTGTTTT
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Coding sequence (CDS) from alignment at Scaffold_527:313517..317739+

>EsuBft965_5a-0001 ID=EsuBft965_5a-0001|Name=EsuBft965_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1377bp|location=Sequence derived from alignment at Scaffold_527:313517..317739+ (Ectocarpus subulatus male Bft15b)
ATGGCCAATGAGAATTGCTGGTTTTGTCAAGTGGTGTTGTGTATGGAGTA
CGTGCAGGGCATCAAGATCAACGATGTGGAGGCCATCGAGAAGGCCGGGG
TGGACCGCGCCTTGCTGGCCACCCGGACGGCCGAGTGCTACCTCGAGCAG
CTCATCCGCCACGGATTCTTCCACTGCGACCCACATCCAGGCAAGCGTCT
GTTGACCGCGTATTCCTGTCCGAAGATTGCGTCACAGACTCCGTCCCCCG
TAATGCTTCGTTCTTCCGTTGCGGAATCGTTCGTGCATTTGTGTCGACAC
CACGGCGGTCGGCCTATCGACGCGCGTCCTTCGCCGGGAATCGGTCACGT
ACGTCAAACAGGGAACCTAGCGTGCGATGCGGTGGACGGCGGTCGCATCA
TCTTCTACGACTTCGGCATGATGGACGAGCTCACGGTGCCGCTGAAGCGA
TCGTTTTCAGACCTGATCTTCGGCATCTACGGCAACGACCTCAAGGAGGT
CGTGGACTCTCTAGAGGAAATGGACGTCATCAGAAAGGGCGCGGACCGCA
TGACGGTGGAGCGAGTAACTCGGTTCTACTTGGGAGAGTTCCAAACCACC
CTCACCAAGGGGGGCAAGTACATTAACCAGCTCGACCCCGAGGAGGAGAA
GGCTCTCATCAGGCGAGAGCGGGCGCAGATCGGGCAGGACCTCTTCTCCG
GGCAGGCGGCGGTGCCCCTTCAGTTCCCCGCGTCGTTCACGTTTGTCTTC
AGGGCCTTCACCACCCTGGACGGCATCGGCAAGACCTTGGATGAGGGGTA
CGACCTCACCAAGATCGCGGGCCCTTACCTGAAGGAGCTGCTTGATTTGA
AGGACGGGAACGCATACGTGTCGTACTTGAAGGGCCTGCAGAAGAAGCTG
GGGTGGCGAGGCCAAGACCTGGCGAGCGTGGTCCAGAGCCCGAGACGAGT
CCAGCACGTGGAGAACGTGGTGACCAAGCTCGAGACCGGGGACCTAAAGC
TCAGGGTTAGGGTGCTCGAGTCGGAGCAGGCGTTTGCGCGGATCGAGGCC
GTGCAGGGCAGCCTGAGCTCGGCGGTGATGGCCACGCTCTTGCTCAACGC
CGGGGTCTTGATGGCGGGGCAGGCGACGGGGGCGGCCAAGTTGAGCTCGC
GAGCGATGTTTGTGCTCGCCGGGTTCTTCGGGATCAAGATTCCCATCGGA
TACTTGAAGCTCGGAACCAGCCAACGCTTCGTTGACTGCATCGACAAACT
TTCTGATCGATCTCAAACGCTATACATACACTTTCCAGAGCCAATATTGT
TTGCTCGCCCCGTGTTGCAGCTCAACAAAGTCTGGCGGTTGAATCGACAA
GCGAGCACATCGAAGGGCTTCCGTTAG
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