EsuBft965_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft965_7a-0001
Unique Name	EsuBft965_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_527	contig	Scaffold_527:307269..311201 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FIH0
ProteomeId	EsuBft965_7
Protein domains	TMhelix
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	PTHR10566
Protein domains	SIGNAL_PEPTIDE
Protein domains	Coil
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Note	probable protein kinase os:shewanella baltica (strain os195) gn:ubib pe:3 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	2880.D7FIH0\|-
Length	2017
Hectar predicted targeting category	chloroplast
Evalue	1.4e-116
EggNOG OGs	COG0661@1\|root,KOG1235@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Description	regulation of tocopherol cyclase activity
COG category	E

Cross References

External references for this mRNA


Database	Accession
GO	0015996
GO	0080183
GO	0010287
GO	0016310
GO	0016301
GO	0000166
GO	0003333

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft965_7a	EsuBft965_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_527 307269..311201 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft965_7a-0001	EsuBft965_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_527 307322..310413 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft965_7a-0001-exon	agat-exon-50351	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 307269..307452 +
EsuBft965_7a-0001-exon	EsuBft965_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 307877..308702 +
EsuBft965_7a-0001-exon	agat-exon-50352	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 310195..311201 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft965_7a-0001-exon	agat-five_prime_utr-15336	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_527 307269..307321 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft965_7a-0001-cds	EsuBft965_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_527 307322..307452 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft965_7a-0001-exon	agat-three_prime_utr-23573	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_527 310414..311201 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_527:307269..311201+
coding sequence from alignment at Scaffold_527:307269..311201+

spliced messenger RNA

>EsuBft965_7a-0001 ID=EsuBft965_7a-0001|Name=EsuBft965_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2017bp|location=Sequence derived from alignment at Scaffold_527:307269..311201+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACAAGCCACGCCAACTTTTGGCCCGTTTGCGGGGTCAACACGTTGGCGTC
ACCATGGTCGAGGCAAGGGTGCTACTACGAGCTTCAACGCTCTTGGTCCT
GTTGACCACGACTGGCGGGTTCTCGTTCCTTCCGCACTCTAGGCCTCTGG
CGCGATCACTCTGCGGGCATCGGCTCTGCAGCAGCGCGATATCCCGCACT
AGATTAGCGTCACCATGCGCCATCGCCGTCGGTAGTGGCAACACGGTGGA
CGAAAAAGAAGGCGAGCCAACACGCCGCCGCAGCAGCATCTCAGATGCAA
CTAGCAATCGTGCGCATGATACAGCAGCATCAGACGGAGCAGCAGCCGAG
GGTAGTAGCAGGGGGGAATGGTATGGCGTCCAGCAGGAGCAGAGGGGAGC
TGCTTCTTCGACGCCGCCAGGGGAAGGGAAAGGGTCGGGGACAACAACGG
CGGCACTGCCCGGGGCGGGGGGGGCAACGGCAACAGCGACGAGACCGAGG
CGAGGAGGCGAGAAGAAGACCAAGTCGGGGAAGAAGGGCAAGGGCTCGAA
GAAGACGAAGACGAACCCGTCCATCGGGAAGTCGAACCTCGACACCATAA
TCGGCTACTCGGCGAAGTCGGGCGTGCTGTTCGGCGGGGATCCCGAAAAA
GTGCTCTTCGGTGGGGAGCCGGAGACGGCGCAATCGAAGTCCTCCAAGGC
CAAGGCCAAGGCCAAAGCCGAGGCAGAGGCGTTGGCGGTGGAGGTGGCGG
CCGCGGCGAGCGAGGTAGAGGAGGAGGAGGAGGACGACGAGGCGCAGCTG
TCGTTCTCGGCGAGATGGCGAAGGAGGATCACCTTCGCCGCTAGGACGGT
GCAGATCTGGGTATTCCTGTTCCACGTCCTGATCAAGCTGCTGCGCCAGA
AGCTCGTGCAGATGGACGAGGCGAGGATGTCGGCCCGGAGGCGGAAGCTG
GGTCGGTACCTGTGCAGGGCGTTCCTCAAGCTCGGGCCCACCTTCATCAA
GATTGGACAGTTGCTGTCTACACGAGTTGACCTTCTGTCGACCGAGTACA
TCGAGGAGCTTCAGCAGCTCCAGGACAATGTGCCCGGCTTCGGGGGAGCT
AAGGCGGTCATCATCATCGAAAGGGAGCTGGGCGCGCCCATCGATCAACT
GTTCGACAAGTTCAACTCGACGTCGCTCGCCGCGGCCAGCCTCGGCCAGG
CGAGTGTACCCTGCGAGGAGGGGTGTTAGTTTTCGCGGGCTTACAACAGG
GTCGATGAACACGTGACACGTGCTACCACCGTTCGTGTTGTGCACGCCGT
TGTTAGTTGTGCATGCTAGAGGGCATAAACAGATATTTGGGAAATATGTC
GAGGAAGTTCCATATCCCTTGCCGATTTTTTTTCCGTCCAAGCCCAGCAC
CTCCCCCCCAGCGCTTTCCCCCTTGAAGTGGCCTGAGTGGCGGTTTTACC
AGTTTACGTACGCTTCCTCTTGGTAGAATTCATGCTGACGTACGTCCGAT
GTTCTTCACCACAGAAGTATGTCAGGTTTCCGCACGAGTTGCGATTGGTT
TTCATCCCCCGAGTTGTTTTTTTTGGCTCGATTCGCCGCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCCCCCCCCTCTCAAAGGCTCCGTGCCACATTCTAAAGCATTTATGTC
TATGCTGAACGTATGCGACCGCCTGTGAAACGAGAGTTGCGCGCACCTAA
AGTTGCCTTGTCTTCACGGTGTGCGATTATATTGTTTTCCCGCCGCCATG
GTGGGCGAGTTCGCTAGAATGAGCGCGGGTAACCAAGCACACGCACCTCG
CCCTCTACTGCTGTCGACCCGCCCTTTTGGCCGTCCCCCTTCTCTTTGGA
GCACCGTCGCAGACAACGGCGGGGGGCTATCAGATGACACACGCTGATGC
AAAACAACGCGCGGCAT

protein sequence of EsuBft965_7a-0001

>EsuBft965_7 ID=EsuBft965_7|Name=EsuBft965_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=391bp
MVEARVLLRASTLLVLLTTTGGFSFLPHSRPLARSLCGHRLCSSAISRTR
LASPCAIAVGSGNTVDEKEGEPTRRRSSISDATSNRAHDTAASDGAAAEG
SSRGEWYGVQQEQRGAASSTPPGEGKGSGTTTAALPGAGGATATATRPRR
GGEKKTKSGKKGKGSKKTKTNPSIGKSNLDTIIGYSAKSGVLFGGDPEKV
LFGGEPETAQSKSSKAKAKAKAEAEALAVEVAAAASEVEEEEEDDEAQLS
FSARWRRRITFAARTVQIWVFLFHVLIKLLRQKLVQMDEARMSARRRKLG
RYLCRAFLKLGPTFIKIGQLLSTRVDLLSTEYIEELQQLQDNVPGFGGAK
AVIIIERELGAPIDQLFDKFNSTSLAAASLGQASVPCEEGC

mRNA from alignment at Scaffold_527:307269..311201+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft965_7a-0001 ID=EsuBft965_7a-0001|Name=EsuBft965_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3933bp|location=Sequence derived from alignment at Scaffold_527:307269..311201+ (Ectocarpus subulatus male Bft15b)
ACAAGCCACGCCAACTTTTGGCCCGTTTGCGGGGTCAACACGTTGGCGTC
ACCATGGTCGAGGCAAGGGTGCTACTACGAGCTTCAACGCTCTTGGTCCT
GTTGACCACGACTGGCGGGTTCTCGTTCCTTCCGCACTCTAGGCCTCTGG
CGCGATCACTCTGCGGGCATCGGCTCTGCAGCAGGTGTACCTTGGGTGTA
TCTGGTTGTTCAACAACGTGTACAAGTTTGGTACAGCAGACTGTAGCAAC
AGGATCGGTGTATGTATCGCCTCGTGAATGTTGAATTCAGTCTGAGGAGG
GCTGGCATCAATCAATGCGCGTGTGTTGCGTGTGCGCGCTGCCACCACAT
GCTGGGGAGGAGCTAGTGCTGCTGCTTCTGCGCGCTTTGTCGTCGTCGTT
GTCAAGTGAACATGTTATGTTGGAATGCCAATCCAAGGCAGCATTTATAT
GTGTGACACAGATTTTGCGATCTCTAGAATAATCTAGGCTACAGCGGTAT
GATATCAGTCTACAGGTATGTAACAACCTCTCCGCCCTTTGTCTCTGTTT
TTCGTAACGAAAACCATCCCGTGCTCCACGCTCGCACGTCTCTCTCTCTC
GTAATCAGCGCGATATCCCGCACTAGATTAGCGTCACCATGCGCCATCGC
CGTCGGTAGTGGCAACACGGTGGACGAAAAAGAAGGCGAGCCAACACGCC
GCCGCAGCAGCATCTCAGATGCAACTAGCAATCGTGCGCATGATACAGCA
GCATCAGACGGAGCAGCAGCCGAGGGTAGTAGCAGGGGGGAATGGTATGG
CGTCCAGCAGGAGCAGAGGGGAGCTGCTTCTTCGACGCCGCCAGGGGAAG
GGAAAGGGTCGGGGACAACAACGGCGGCACTGCCCGGGGCGGGGGGGGCA
ACGGCAACAGCGACGAGACCGAGGCGAGGAGGCGAGAAGAAGACCAAGTC
GGGGAAGAAGGGCAAGGGCTCGAAGAAGACGAAGACGAACCCGTCCATCG
GGAAGTCGAACCTCGACACCATAATCGGCTACTCGGCGAAGTCGGGCGTG
CTGTTCGGCGGGGATCCCGAAAAAGTGCTCTTCGGTGGGGAGCCGGAGAC
GGCGCAATCGAAGTCCTCCAAGGCCAAGGCCAAGGCCAAAGCCGAGGCAG
AGGCGTTGGCGGTGGAGGTGGCGGCCGCGGCGAGCGAGGTAGAGGAGGAG
GAGGAGGACGACGAGGCGCAGCTGTCGTTCTCGGCGAGATGGCGAAGGAG
GATCACCTTCGCCGCTAGGACGGTGCAGATCTGGGTATTCCTGTTCCACG
TCCTGATCAAGCTGCTGCGCCAGAAGCTCGTGCAGATGGACGAGGCGAGG
ATGTCGGCCCGGAGGCGGAAGCTGGGTCGGTACCTGTGCAGGGCGTTCCT
CAAGCTCGGGCCCACCTTCATCAAGATTGGACAGGTGCGTGCGCACCCCG
TGTGTGTGTATAAAAGCGCCCCTTTGTGGCCCGTACAACAGCAGCACAGC
AAGCCTTCACACGCAGAGCTCGAGATCTGGAAGCCCGCGGAAGGGGGTCT
TGGCTGATATTTCATCCTGCGGGACCCCCCCTCCCAAGCGGTTAGTAGTC
ACGTCGGGATATCCTCTCTTGGTGGCGGGGGGCGGGGGGCGAGGGGCGGG
CGGCACTCGCAGCGTAGAAATTGTCAAAGGGGTATGGATATATCCCCGCC
ACAGCAGTCTTCCTGTGCTTGCTTGATTCGAAGCGGGACAGTAGAGGTTA
CGATGGTCGGAGGTTTCACAATCCCTGCCACCAGACCTGACACCTGTACA
GTAGCAGTAGTTGAGATCGCTGAAACTTGAGCGGTACCGCCGAAGTAGGG
AACAAAAGCGGCGGCATACGCAAAACCAGCCAGTGTTCCTAGACATAGCG
CACTGGATATTTGGTATTCAGCACCTGTCACCGCACGTGGTTCGTGTGTT
TACGACCACACCCTGTAGAACGATGTCTGCATACCACACCCTGCCTCGGA
CTCACCTGTGGCTGGCGACAGGTTGGCTGTTCCCCACCGCCCTCACACTG
TAGTGCCGATCACGCGCGAGACGCTCGGTGTGTTGGAGGTTCCACCGCCA
AAAGAGAAAGCAGTCAGCGCCGCAGGAGGGCCCCCAAGGACGATAGTGGA
CAGCAGCGGCTGTGCCGATCTCGCAGGGTAGCCGTACGAGTTGGGGCAAC
TCTAGTAGGTGCATGTATTTGCCGCTGATCCTCAAATGAGGGGCTCGAAA
CACACTTGACTTGTGTTAGGGAGATTCCGGAAACCCGAATAGTACGAGCG
AGGCCATTGAGGGAAACTGTGCCTCAGACAAAACTTCAGATCGCGATTTC
GGTGCTACTATGATAAAACCACTTTGACATCACCTGTACCCGTTGGATCC
AACGCGACGAGATCCGGCGGACCTCCGAGGGTGTACCCTTTTTTGGTCTT
TGCCTGTGTTCCTGAGCGTAATGTGTGTGACTGGTTTTGTGTGTGCTGTC
GAAACGAACAACAGAAGCTCAATATGTCAACCGAGCTACATGCTATTCTT
GCGTTCTCGAAAGTAGAGAGACGCAGCATCTCCTGACTTATGCACACCAG
AACACTCGTTTTCAAGTACTAACTGGCGGCGTCTTGACAGACCCCTTTCA
GCCGGTATTTCTTGTTTGATAAATTGATTGATCGGCACGCGTGAAGTTGT
CCTGTTCGGGCTACGGCTCCAGCTCCAGTGGATCATAGCTTATTCTTCTG
TCCTTTATCAAGTGGGACACTGGTGACCCATGTGGGTGGCGAAGCCTAGT
ACTGCTGCAATCCCTGTAAATACATGGTTTGGTAACGTGGCTTTGGCCTT
GTGTGGTTCTGGCACACCCCCCTGGCACACACCCCTGACACCGCTCTGCC
CCTCCCGTGGACGCGTGTGGCTGCAGTTGCTGTCTACACGAGTTGACCTT
CTGTCGACCGAGTACATCGAGGAGCTTCAGCAGCTCCAGGACAATGTGCC
CGGCTTCGGGGGAGCTAAGGCGGTCATCATCATCGAAAGGGAGCTGGGCG
CGCCCATCGATCAACTGTTCGACAAGTTCAACTCGACGTCGCTCGCCGCG
GCCAGCCTCGGCCAGGCGAGTGTACCCTGCGAGGAGGGGTGTTAGTTTTC
GCGGGCTTACAACAGGGTCGATGAACACGTGACACGTGCTACCACCGTTC
GTGTTGTGCACGCCGTTGTTAGTTGTGCATGCTAGAGGGCATAAACAGAT
ATTTGGGAAATATGTCGAGGAAGTTCCATATCCCTTGCCGATTTTTTTTC
CGTCCAAGCCCAGCACCTCCCCCCCAGCGCTTTCCCCCTTGAAGTGGCCT
GAGTGGCGGTTTTACCAGTTTACGTACGCTTCCTCTTGGTAGAATTCATG
CTGACGTACGTCCGATGTTCTTCACCACAGAAGTATGTCAGGTTTCCGCA
CGAGTTGCGATTGGTTTTCATCCCCCGAGTTGTTTTTTTTGGCTCGATTC
GCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCCCCCCTCTCAAAGGCTCCGTGCCACATT
CTAAAGCATTTATGTCTATGCTGAACGTATGCGACCGCCTGTGAAACGAG
AGTTGCGCGCACCTAAAGTTGCCTTGTCTTCACGGTGTGCGATTATATTG
TTTTCCCGCCGCCATGGTGGGCGAGTTCGCTAGAATGAGCGCGGGTAACC
AAGCACACGCACCTCGCCCTCTACTGCTGTCGACCCGCCCTTTTGGCCGT
CCCCCTTCTCTTTGGAGCACCGTCGCAGACAACGGCGGGGGGCTATCAGA
TGACACACGCTGATGCAAAACAACGCGCGGCAT

Coding sequence (CDS) from alignment at Scaffold_527:307269..311201+

>EsuBft965_7a-0001 ID=EsuBft965_7a-0001|Name=EsuBft965_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1176bp|location=Sequence derived from alignment at Scaffold_527:307269..311201+ (Ectocarpus subulatus male Bft15b)
ATGGTCGAGGCAAGGGTGCTACTACGAGCTTCAACGCTCTTGGTCCTGTT
GACCACGACTGGCGGGTTCTCGTTCCTTCCGCACTCTAGGCCTCTGGCGC
GATCACTCTGCGGGCATCGGCTCTGCAGCAGCGCGATATCCCGCACTAGA
TTAGCGTCACCATGCGCCATCGCCGTCGGTAGTGGCAACACGGTGGACGA
AAAAGAAGGCGAGCCAACACGCCGCCGCAGCAGCATCTCAGATGCAACTA
GCAATCGTGCGCATGATACAGCAGCATCAGACGGAGCAGCAGCCGAGGGT
AGTAGCAGGGGGGAATGGTATGGCGTCCAGCAGGAGCAGAGGGGAGCTGC
TTCTTCGACGCCGCCAGGGGAAGGGAAAGGGTCGGGGACAACAACGGCGG
CACTGCCCGGGGCGGGGGGGGCAACGGCAACAGCGACGAGACCGAGGCGA
GGAGGCGAGAAGAAGACCAAGTCGGGGAAGAAGGGCAAGGGCTCGAAGAA
GACGAAGACGAACCCGTCCATCGGGAAGTCGAACCTCGACACCATAATCG
GCTACTCGGCGAAGTCGGGCGTGCTGTTCGGCGGGGATCCCGAAAAAGTG
CTCTTCGGTGGGGAGCCGGAGACGGCGCAATCGAAGTCCTCCAAGGCCAA
GGCCAAGGCCAAAGCCGAGGCAGAGGCGTTGGCGGTGGAGGTGGCGGCCG
CGGCGAGCGAGGTAGAGGAGGAGGAGGAGGACGACGAGGCGCAGCTGTCG
TTCTCGGCGAGATGGCGAAGGAGGATCACCTTCGCCGCTAGGACGGTGCA
GATCTGGGTATTCCTGTTCCACGTCCTGATCAAGCTGCTGCGCCAGAAGC
TCGTGCAGATGGACGAGGCGAGGATGTCGGCCCGGAGGCGGAAGCTGGGT
CGGTACCTGTGCAGGGCGTTCCTCAAGCTCGGGCCCACCTTCATCAAGAT
TGGACAGTTGCTGTCTACACGAGTTGACCTTCTGTCGACCGAGTACATCG
AGGAGCTTCAGCAGCTCCAGGACAATGTGCCCGGCTTCGGGGGAGCTAAG
GCGGTCATCATCATCGAAAGGGAGCTGGGCGCGCCCATCGATCAACTGTT
CGACAAGTTCAACTCGACGTCGCTCGCCGCGGCCAGCCTCGGCCAGGCGA
GTGTACCCTGCGAGGAGGGGTGTTAG