EsuBft1007_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1007_10a-0001
Unique NameEsuBft1007_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_519contigScaffold_519:242931..245588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1007_10
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Noteprobable autotransporter rod [Automatic annotation]
Nb exon1
Length2658
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_10aEsuBft1007_10aEctocarpus subulatus male Bft15bgeneScaffold_519 242931..245588 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_10a-0001-exonEsuBft1007_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_519 242931..245588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_10a-0001-cdsEsuBft1007_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_519 242931..245588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_10a-0001EsuBft1007_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_519 242931..245588 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1007_10a-0001 ID=EsuBft1007_10a-0001|Name=EsuBft1007_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2658bp|location=Sequence derived from alignment at Scaffold_519:242931..245588+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTCGTAGTGAGCGGCGGCATGTTGGTGGAAGGCGCGGCACCGGG
CGGCACGGCGGCGGGAGACGGTATTACTGACGGTGCAGCGGCGGTGGTGA
ACGGTGAGGCCGGAGGCGAGGCGGCAGTGGTGAACGGTGTCGCGGCGGCG
AACGGCGGTGCAGGCGGCGCGGTGGTGGTGAACAGTGGCGCGGCGGCGAG
CGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCG
GCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGC
GTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGT
TGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTG
CAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCA
GGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGG
CGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCG
GCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGC
GCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGC
GGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGG
TGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTG
GTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGT
GGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGG
TGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTG
AACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAA
CGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACG
GTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGT
GGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGG
CGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCG
CGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCG
GCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGC
GGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGG
CGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCG
AGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAG
CGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCG
GCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGC
GTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGT
TGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTG
CAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCA
GGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGG
CGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCG
GCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGC
GCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGC
GGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGG
TGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTG
GTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGT
GGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGG
TGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTG
AACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAA
CGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACG
GTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGT
GGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGG
CGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCG
GTGGTGTGGCTGCGGTAGACGGCGCCGCCGGCGATGGTGGTGTGGAAGTT
GCCGGCGGCGCCTGTGAGAGTATGGCAGCGGGTGAAGTGGGAGGTCGGGC
ATACGGTGAGGGGGGTAAGAGAGGCGGTGAAATATACTCAATTAGAAACG
GTGCGGCGGCGACATTCGAATCTCCCCCCTCGTCCGCCGGCGCCGGCAGC
TCCAGCGGCGGGGTCAGCAACGGCGCGCGGTCGGAGACCCACACGACGTT
GTTCGTCATGCACACGCGCCCCGTCGCGAACTTGAGGACCTTGACCGCCG
ACTCGTGA
back to top

protein sequence of EsuBft1007_10a-0001

>EsuBft1007_10 ID=EsuBft1007_10|Name=EsuBft1007_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=885bp
MVLVVSGGMLVEGAAPGGTAAGDGITDGAAAVVNGEAGGEAAVVNGVAAA
NGGAGGAVVVNSGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASG
VAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVA
GGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGG
AVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAV
VVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVV
NGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNG
GAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGA
AASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAA
SGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASG
VAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVA
GGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGG
AVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAV
VVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVV
NGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGAAASGVAGGAVVVNG
GAAASGVAGGAVVVNGGAAASGVAGGAVVVNGGGGVAAVDGAAGDGGVEV
AGGACESMAAGEVGGRAYGEGGKRGGEIYSIRNGAAATFESPPSSAGAGS
SSGGVSNGARSETHTTLFVMHTRPVANLRTLTADS
back to top

mRNA from alignment at Scaffold_519:242931..245588+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1007_10a-0001 ID=EsuBft1007_10a-0001|Name=EsuBft1007_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2658bp|location=Sequence derived from alignment at Scaffold_519:242931..245588+ (Ectocarpus subulatus male Bft15b)
ATGGTCCTCGTAGTGAGCGGCGGCATGTTGGTGGAAGGCGCGGCACCGGG CGGCACGGCGGCGGGAGACGGTATTACTGACGGTGCAGCGGCGGTGGTGA ACGGTGAGGCCGGAGGCGAGGCGGCAGTGGTGAACGGTGTCGCGGCGGCG AACGGCGGTGCAGGCGGCGCGGTGGTGGTGAACAGTGGCGCGGCGGCGAG CGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCG GCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGC GTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGT TGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTG CAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCA GGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGG CGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCG GCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGC GCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGC GGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGG TGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTG GTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGT GGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGG TGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTG AACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAA CGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACG GTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGT GGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGG CGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCG CGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCG GCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGC GGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGG CGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCG AGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAG CGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCG GCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGC GTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGT TGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTG CAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCA GGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGG CGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCG GCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGC GCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGC GGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGG TGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTG GTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGT GGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGG TGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTG AACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAA CGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACG GTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGT GGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGG CGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCG GTGGTGTGGCTGCGGTAGACGGCGCCGCCGGCGATGGTGGTGTGGAAGTT GCCGGCGGCGCCTGTGAGAGTATGGCAGCGGGTGAAGTGGGAGGTCGGGC ATACGGTGAGGGGGGTAAGAGAGGCGGTGAAATATACTCAATTAGAAACG GTGCGGCGGCGACATTCGAATCTCCCCCCTCGTCCGCCGGCGCCGGCAGC TCCAGCGGCGGGGTCAGCAACGGCGCGCGGTCGGAGACCCACACGACGTT GTTCGTCATGCACACGCGCCCCGTCGCGAACTTGAGGACCTTGACCGCCG ACTCGTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_519:242931..245588+

>EsuBft1007_10a-0001 ID=EsuBft1007_10a-0001|Name=EsuBft1007_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2658bp|location=Sequence derived from alignment at Scaffold_519:242931..245588+ (Ectocarpus subulatus male Bft15b)
ATGGTCCTCGTAGTGAGCGGCGGCATGTTGGTGGAAGGCGCGGCACCGGG
CGGCACGGCGGCGGGAGACGGTATTACTGACGGTGCAGCGGCGGTGGTGA
ACGGTGAGGCCGGAGGCGAGGCGGCAGTGGTGAACGGTGTCGCGGCGGCG
AACGGCGGTGCAGGCGGCGCGGTGGTGGTGAACAGTGGCGCGGCGGCGAG
CGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCG
GCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGC
GTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGT
TGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTG
CAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCA
GGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGG
CGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCG
GCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGC
GCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGC
GGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGG
TGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTG
GTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGT
GGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGG
TGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTG
AACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAA
CGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACG
GTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGT
GGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGG
CGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCG
CGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCG
GCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGC
GGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGG
CGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCG
AGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAG
CGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCG
GCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGC
GTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGT
TGCAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTG
CAGGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCA
GGCGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGG
CGGCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCG
GCGCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGC
GCGGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGC
GGTGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGG
TGGTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTG
GTGGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGT
GGTGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGG
TGAACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTG
AACGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAA
CGGTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACG
GTGGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGT
GGCGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGG
CGCGGCGGCGAGCGGCGTTGCAGGCGGCGCGGTGGTGGTGAACGGTGGCG
GTGGTGTGGCTGCGGTAGACGGCGCCGCCGGCGATGGTGGTGTGGAAGTT
GCCGGCGGCGCCTGTGAGAGTATGGCAGCGGGTGAAGTGGGAGGTCGGGC
ATACGGTGAGGGGGGTAAGAGAGGCGGTGAAATATACTCAATTAGAAACG
GTGCGGCGGCGACATTCGAATCTCCCCCCTCGTCCGCCGGCGCCGGCAGC
TCCAGCGGCGGGGTCAGCAACGGCGCGCGGTCGGAGACCCACACGACGTT
GTTCGTCATGCACACGCGCCCCGTCGCGAACTTGAGGACCTTGACCGCCG
ACTCGTGA
back to top