EsuBft1238_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1238_7a-0001
Unique NameEsuBft1238_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_510contigScaffold_510:330014..332174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1238_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length154
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1238_7aEsuBft1238_7aEctocarpus subulatus male Bft15bgeneScaffold_510 330014..332174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1238_7a-0001EsuBft1238_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_510 330083..331295 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1238_7a-0001-exonagat-exon-78969Ectocarpus subulatus male Bft15bexonScaffold_510 330014..330328 -
EsuBft1238_7a-0001-exonEsuBft1238_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_510 330478..330688 -
EsuBft1238_7a-0001-exonagat-exon-78970Ectocarpus subulatus male Bft15bexonScaffold_510 330805..331035 -
EsuBft1238_7a-0001-exonagat-exon-78971Ectocarpus subulatus male Bft15bexonScaffold_510 331186..331751 -
EsuBft1238_7a-0001-exonagat-exon-78972Ectocarpus subulatus male Bft15bexonScaffold_510 331951..332174 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1238_7a-0001-exonagat-three_prime_utr-2232Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_510 330014..330082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1238_7a-0001-cdsEsuBft1238_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_510 330083..330328 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1238_7a-0001-exonagat-five_prime_utr-1486Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_510 331296..331751 -
EsuBft1238_7a-0001-exonagat-five_prime_utr-1487Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_510 331951..332174 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1238_7a-0001 ID=EsuBft1238_7a-0001|Name=EsuBft1238_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1547bp|location=Sequence derived from alignment at Scaffold_510:330014..332174- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCCTCGCGGGCGAACCAGGCCACAACAGATAGTAGGCGGGTGGTGTCCC
AAGGTGCAAATCACCGCCGCGCTGGCTCAGCGTGGCGGTGAGGATGCACA
GACGGTGGTAGTGGCGAGAGGTGTGTATGGACACTGTTCCCGCGGCAGTA
ATGTAAAGCGGCAAACTGCACCTGGCAACCACCGTCGCGGAAAGCGTGGC
CCACGAAGCTGGAGGAGTAGAGAGGTTCGTAAACACCACGCGAGTAAGCA
CCGCTCGCGGGGGAAGGGAGACAACCGCGGGCACCGCGGGGAGGGAGTGT
TGTACCCTCCTCGTCAAAACACCACAGGCAAGCAACCGAGCTCTGCAGAG
ATGGATTGATGCGAGGAAACTTACCGCTCGGAAAATACGGAAGAAAGCAC
ACCCGCAACGCGAGGCGGACCGAGAGAGACACGAGACCGCAGCGGCCGTC
AATAAGGCTGCGAAGAAGAAGGCACGGGAGGGCGACCTATCGTTTGGCAC
GTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTC
TACAAATTGGCCGCACCTGCGGAGTAACTTTCGTAGTGGGGAGGCGAGAC
GGATGCTGCGATGCCAAGATTATGGGCGCGTACGGACGCGACATTATGAA
CAACAACGGGGAACGACTCCTTGGACTGGCATCAGACAACCAACTCTCCC
TGACCAACACCTACTTCCGGACACCGAAAGGTGGAGTGCAGCACACATTC
CAGAGCTCCAACAAGGGCAAGGAGAAGTACCGCCTAGACTTCATCCTCAT
GCATGGACGGACCGGCGTTTGCGGAAGCAGCCGGATCCGTATCGACCTCG
AGCGGTTGAGAAAGGACAAACACCTACGGGACGCCTTCCAAAACAGGGCC
TCTAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGGAGAGACCGC
CGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCTGAGACCGCGCAGC
TGGTGCNGCCGGATCCGTATCGACCTCGAGCGGCGGGTTTCTACAGGCAC
CTGATGATGATCGATGTCGAAGGGAGGAGGTCGTTCTCCTCTCAGAACAT
CAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTCGCCAAC
GGTGGGCACGGTGGTCCCACAAGCTTCTCAACACCAAGTCGCCGACCATC
GACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACT
CGACGACATACCATCTCTACTCGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft1238_7a-0001

>EsuBft1238_7 ID=EsuBft1238_7|Name=EsuBft1238_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=266bp
MWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGRRDGCCDAKIMGA
YGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKY
RLDFILMHGRTGVCGSSRIRIDLERLRKDKHLRDAFQNRASSRPPPTALR
RPTGETAAELTATVMSAAAETAQLVXPDPYRPRAAGFYRHLMMIDVEGRR
SFSSQNIKDEDGKVLRDPTFIRQRWARWSHKLLNTKSPTIDLHAADKVKR
WPTCVPLDDIPSLLXX
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mRNA from alignment at Scaffold_510:330014..332174-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1238_7a-0001 ID=EsuBft1238_7a-0001|Name=EsuBft1238_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2161bp|location=Sequence derived from alignment at Scaffold_510:330014..332174- (Ectocarpus subulatus male Bft15b)
TCCCTCGCGGGCGAACCAGGCCACAACAGATAGTAGGCGGGTGGTGTCCC
AAGGTGCAAATCACCGCCGCGCTGGCTCAGCGTGGCGGTGAGGATGCACA
GACGGTGGTAGTGGCGAGAGGTGTGTATGGACACTGTTCCCGCGGCAGTA
ATGTAAAGCGGCAAACTGCACCTGGCAACCACCGTCGCGGAAAGCGTGGC
CCACGAAGCTGGAGGAGTAGAGAGGTTCGTAAACACCACGCGAGTAAGCA
CCGCTCGCGGGGGAAGGGAGACAACCGCGGGCACCGCGGGGAGGGAGTGT
TGTACCCTCCTCGTCAAAACACCACAGGCAAGCAACCGAGCTCTGCAGAG
ATGGATTGATGCGAGGAAACTTNGCAACCACCGTCGCGGAAAGCGTGGCC
CACGAAGCTGGAGGAGTAGAGAGGTTCGTAAACACCACGCGAGTAAGCAC
CGCTCGCGGGGGAAGGGAGACAACCGCGGGCACCGCGGGGAGGGAGTGTT
GTACCCTCCTCGTCAAAACACCACAGGCAAGCAACCGAGCTCTGCAGAGA
TGGATTGATGCGAGGAAACTTACCGCTCGGAAAATACGGAAGAAAGCACA
CCCGCAACGCGAGGCGGACCGAGAGAGACACGAGACCGCAGCGGCCGTCA
ATAAGGCTGCGAAGAAGAAGGCACGGGAGGGCGACCTATCGTTTGGCACG
TTCAACGTACGCACGCTCGCCTACAGCGGTAGGAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGCACCAAGGACAAGAGGGGCGTAC
ACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGAG
GAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTCT
ACAAATTGGCCGCACCTGCGGAGTAACTTTCGTAGTGGGGTACGCCCCCA
CGTAAACTGTCCGCATCGCCGCGGGCGGTGATGTCAATGCCAAGGACTCC
TTCTGGACTGCTCTCGACGCAGAGATCCGGGAGGTCCATAGCCGTGACCA
TCTCGTGGTACTAATGGACGCCAACGCACGTACTGGCAGGAGGCGAGACG
GATGCTGCGATGCCAAGATTATGGGCGCGTACGGACGCGACATTATGAAC
AACAACGGGGAACGACTCCTTGGACTGGCATCAGACAACCAACTCTCCCT
GACCAACACCTACTTCCGGACACCGAAAGGTGGAGTGCAGCACACATTCC
AGAGCTCCAACAAGGGCAAGGAGAAGTACCGCCTAGACTTCATCCTCATG
CATGGACGGACCGGCGTTTGGTGCGTATTGTCTCCGTCAAACGTGACGAC
TTCAAGGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCC
CCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGCAGCCGGA
TCCGTATCGACCTCGAGCGGTTGAGAAAGGACAAACACCTACGGGACGCC
TTCCAAAACAGGGCCTCTAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCC
AACGGGAGAGACCGCCGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTG
CTGAGACCGCGCAGCTGGTGCNGCCGGATCCGTATCGACCTCGAGCGGTT
AAGGAAGGACAAACACCTACGGCTCGCCTTCCAAAACAGGGCTTCCAGCC
ACCCTCCGCCCACGGCGCTCTNCGAGGTGGAGAGCACTGGAAACGATCTT
CGAGGGCTATGTACGGCAGCTCGAGAAGAAGAACGAGGGGGATCAGGCGG
GTTTCTACAGGCACCTGATGATGATCGATGTCGAAGGGAGGAGGTCGTTC
TCCTCTCAGAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCAC
GTTTATTCGCCAACGGTGGGCACGGTGGTCCCACAAGCTTCTCAACACCA
AGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCC
ACGTGCGTGCCACTCGACGACATACCATCTCTACTCGANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_510:330014..332174-

>EsuBft1238_7a-0001 ID=EsuBft1238_7a-0001|Name=EsuBft1238_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=798bp|location=Sequence derived from alignment at Scaffold_510:330014..332174- (Ectocarpus subulatus male Bft15b)
ATGTGGGAGAGTGTGGGCGAGGAAGGTAGGACGGTGGAGTGCATTAGCCC
GAGGCTGATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTT
TCGTAGTGGGGAGGCGAGACGGATGCTGCGATGCCAAGATTATGGGCGCG
TACGGACGCGACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGC
ATCAGACAACCAACTCTCCCTGACCAACACCTACTTCCGGACACCGAAAG
GTGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGCAAGGAGAAGTAC
CGCCTAGACTTCATCCTCATGCATGGACGGACCGGCGTTTGCGGAAGCAG
CCGGATCCGTATCGACCTCGAGCGGTTGAGAAAGGACAAACACCTACGGG
ACGCCTTCCAAAACAGGGCCTCTAGCCGCCCTCCGCCCACGGCGCTCAGG
CGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGGTGATGTCGGC
CGCTGCTGAGACCGCGCAGCTGGTGCNGCCGGATCCGTATCGACCTCGAG
CGGCGGGTTTCTACAGGCACCTGATGATGATCGATGTCGAAGGGAGGAGG
TCGTTCTCCTCTCAGAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGA
CCCCACGTTTATTCGCCAACGGTGGGCACGGTGGTCCCACAAGCTTCTCA
ACACCAAGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGG
TGGCCCACGTGCGTGCCACTCGACGACATACCATCTCTACTCGANNNN
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