EsuBft98_24a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft98_24a-0001
Unique Name	EsuBft98_24a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_510	contig	Scaffold_510:29421..34054 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft98_24
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SignalP-noTM
Protein domains	TMhelix
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	117
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-14_003060.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft98_24a	EsuBft98_24a	Ectocarpus subulatus male Bft15b	gene	Scaffold_510 29421..34054 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_24a-0001	EsuBft98_24	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_510 29479..33446 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_24a-0001-exon	EsuBft98_24a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 29421..29628 +
EsuBft98_24a-0001-exon	agat-exon-75210	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 32681..32836 +
EsuBft98_24a-0001-exon	agat-exon-75209	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 33240..34054 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_24a-0001-exon	agat-five_prime_utr-15543	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_510 29421..29478 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_24a-0001-cds	EsuBft98_24a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_510 29479..29628 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_24a-0001-exon	agat-three_prime_utr-23837	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_510 33447..34054 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_510:29421..34054+
coding sequence from alignment at Scaffold_510:29421..34054+

spliced messenger RNA

>EsuBft98_24a-0001 ID=EsuBft98_24a-0001|Name=EsuBft98_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1179bp|location=Sequence derived from alignment at Scaffold_510:29421..34054+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTTACACATAGCACTGCACGGCACACACCACCACACAGATATACCACAC
CCTTCACCATGAAGTTTGGTATGAGGCGGGCGTCTTTGGTCATGCTGGCG
ATTGTCTTGCGGCGATCGGCGCAAGCTTTCACGGTCCCAAGCGTGATGAC
CATCAGACCTTCGCAGCAGGCGCAAGCGCAGCAACAACATCCGCCCGCTT
CTGGACAGGTATTCGCCGCGACGGACGTTGTTCCTGCTTCCAAAGGGCAG
GCGCCGCGGCCACGAGGGCAGTTGGAAAGGGCACTGCAAGGGGCGTCGTT
CGCGGCAGCAACAGGGTTTGCGGGAGCGTCCAGTGTGCTAGCAGAGTACA
TTGATCCGGACGATGTCGGTGAAGTCGTCAGTAGCGACCTTCCGCCGATG
TGGGTGCCGCTCGCAGTCGGCTTCGTTCTCACGCTAGGCATCGGCCTGCT
TCAGGGCAGCCTGGGGGACGTTATGAACGACGAGGCCAAGCTCGGGGCAT
TGTCAGGCGCGAGAGCTGCCAAGCAAAGTGCCCGCGACCGAGACATGTTC
AAGAAGAAAGGCCCAAAATAGTCGGCTATGAGCCAACATTGTGGGGAAAG
AGATAGGTAGATAAACTGGCATGGTTCAAATGGGGGCATGGGGGCCGTGT
CTGTAAACCCCCTTGTAGATTTTGGATGTGTTTGAGACTCTACTGTAGTG
CGTTGTTGAGATTTGTCTCGGCGCGACAATGGCTGTGGCCGGCGTGATTT
GTCCAGGCTCTCCAGAGAGTGGACGCAGGCGAAATTCGGTCGGGGGGTGT
TTTTTGTGCCTATTGAAAGTTGAGGAAGAGCTGTATACATCGATCCTTTT
TGCGGAAGCCAGGTAACCAGGACTTTTCTCCCTTTGTACAGACATTCAAC
ACCGGGAAGAGATCTGGAAAGCTGACGGATAGATTTCCTTCGGTCCGGGG
GTTTTGCCAAGAACGGTCCACGAAATGCAGCAAACATCCGGGATGGATCT
TTAATATAGGAAAGGGTGTTGATGAAAGCACACCTAGCTTACACATTGTA
AGTGCCTTCGGCCGCACCCTTGGCATTTCTCGCCGCATATGTATCACGAG
AGAAAGCGCCCCCCCCCGTTGGCAGACCGTTAAACTACCGGGATAGGGTT
GGCAGACTGTGACTCAGTGGAGATGGGGT

protein sequence of EsuBft98_24a-0001

>EsuBft98_24 ID=EsuBft98_24|Name=EsuBft98_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=170bp
MKFGMRRASLVMLAIVLRRSAQAFTVPSVMTIRPSQQAQAQQQHPPASGQ
VFAATDVVPASKGQAPRPRGQLERALQGASFAAATGFAGASSVLAEYIDP
DDVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSG
ARAAKQSARDRDMFKKKGPK

mRNA from alignment at Scaffold_510:29421..34054+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft98_24a-0001 ID=EsuBft98_24a-0001|Name=EsuBft98_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4634bp|location=Sequence derived from alignment at Scaffold_510:29421..34054+ (Ectocarpus subulatus male Bft15b)
TTTTACACATAGCACTGCACGGCACACACCACCACACAGATATACCACAC
CCTTCACCATGAAGTTTGGTATGAGGCGGGCGTCTTTGGTCATGCTGGCG
ATTGTCTTGCGGCGATCGGCGCAAGCTTTCACGGTCCCAAGCGTGATGAC
CATCAGACCTTCGCAGCAGGCGCAAGCGCAGCAACAACATCCGCCCGCTT
CTGGACAGGTGGTTCTTTGCTGGAGTACAATCAATGTTCCTAATGCTTTG
TAGGTTTATGGACTCATTGTATGTCCATGCAGAGCCAAGTGCAAAATGAA
CAGCATCTGTAAAAGACTGTATGCTACAGCGGTACGTAGTACCGAATACG
CCGCAAGATGACACCCCCTTGGACCGATTTTCAAAGCTCGATTTATCAAG
ATGCAGGAAAGTCGCAGCGCCGAAAACGGCGGCGTTGAAGCCACGTCTGA
TCGAGAGCTCTCCGAAAATGTGTACGTGTATCGTTTTCTTTAGGCATCCT
CTTCGTCGCGGAGAAGTCGAGCTTTGGAAATCGGTCCAGAAGGCGTGAAA
TCTTGTGTCGTATACGGTAGATGATGTGTAGGAAGCATCTTCGTACCGGT
GTGGTTTGCAAATACATACAAGCAGCTTCGGCATACTGTAGATACTACAA
TGCCCGTGTGGTGTTGAAATGCTACAGCAGCCTAATAATAGCGACAGATT
TGGGGGACAGTGTACTTTTGTTTTTCGAAGTACCACAGCAGCAGTCTTAT
TCGTGCCCTGCTCGGTCTGCACTACTCTTCGCGATGTACAGTAGTGAGGG
GACGTCGCCGGTTGGATAGCGCCGGTGGCCTGTATGGCGTCTGAATTGCT
GGGCACAGACCGAATCAGAAGTCATTCTGTACATTGAATAGTGCCGGTCC
CCCTGAGTAGCGCCGGTCGACCGGTCGATGCACTCAACAAGCGCATCCCG
GCATTATTTGAAAGCCCTCCATTGCTGTACTCTTTGAATTTTCTGAACGA
TGAGCGCTGACGGACTTGCTGTGTTCGTTGGATCGCTCTGGTTTTATTTA
GTGTCTGATTCACAGATGGCTCCCCGTTAACACACACGCACTTGTAAGCT
ACCGCCGGTATGTAATGGCTAAATGACATAACAAGGTATATTGCCCTGCT
CTGGAAGCGACCTAGCAGCTGGGTATGTACTCCTGCTGTGTTGCATTTGG
CAGCATGAAACGAGCTCGGCTGATTGGTCAACGTCCACTTTCACGCTGCC
GTCCCCTAGAAACCGCGGGGTTACCCTGCCACGCTACTTTTCTCCAAAAA
GTACCACGAGTTCGGAACGTACCCTGACCTTTCAACGACCATTTCCTCCA
CAGGAACCCCTTTCCCCTTTCCCCTGCAACCATGAGATACCAAACACCCA
ACTCTTCTCGCTCGGCATCAACCATGGCAACTGGGCAGAAATCGGTCATC
GATCAGGATGGATTGTCCGATTTTCCGTCCAGGTAAAACATGAACCACCA
GATTTCCCCGCTCTCAACAATGGCTGGCACACACCAGCACAATTTTGTCG
GGAAATCAGCCGATCCTTACCTATGTTAGATATACGCGAGACACAAGTCA
CGCTCAGAACGCGAGACCGATCCGGCATTGTTGAAATGTCGACGCACAAA
AAACTCGCGTATTTGCGCGTGTGTGGCGGGGAACTCTCATGGCCGTCGAG
GGGCGGAAGGATACACACACCCGCGTTGAGGGCACATCCTCCGGACCGCG
ACTCCTGTACCGTCGCCGTCGACCTGCCGAAGATGGGAACGTTGTGAGCT
ACAATCCGACCGTCCTCCGCCTCTGGGGTGGATATGTGAACACCGTCGCC
ATCCTCGACATGCGCGTGTTCGAGTATCTCCTGGGATACATGCGTTGTCA
ATTATTGAGAACGGGCGACGGTGTTCACATGTTGAGGCCTCTGGTGTGGA
CATGTGAACACCGTCGCCATCCTGGACAAAACGCGTATGTCGAGGATGGC
GACGGTGTTCATATGTCCACCCCAATTGAGAACTTATCCCAGGAGATACT
CGAAGATCCGCATATCGATGATGGCGACGGTGTTCACACGTCCACCCCAG
AGGCGGAGTGGTCGGATTGTATCCTACAACGTTGCCATATTCGGCAGGTC
GAGAGCGACGGTAATCTACAGGCGTCCGGATCCTCAACGCGGGTGTGTGT
GTCCTTCCGCCCTTCCGCGGCCACGAGAGTTCCCCGCCACACATCCGCAA
ATACACACAATAAAAATTGCATCGGCAATTCACCGATGCCGGATTGGTCT
CGCGTTCCAAGCGTGACTCGTATGTCGCATTCGTACCTCACGTACGTACG
TGTCGGATGCTCTCCCGACGGAATTGTGCTGGCATGCCAGCAGTCATTTG
TTTAGAGCGGGAAAAGTTGATGGTTGTGTTGTTTTGCGGGGGTGGAACAT
CCGTCGTGATCGAAATCTGCCCGATTCCCATGCGTTGATTTCGAGCGAGA
AGAGTTGGTGTTTGGTATCTCAATGTGGGAAGGGAACAAGATTCCTGCGG
AGAAAATGGTAGATGAAAAGTTCGCATTTCCTGTCTTGCCAGGGTACATT
TCTGGAGAAAGTAGCCGTGGCAGGATATTCGCTTTTGAGGATACGGCGGG
GTGAAAGTGGACGTCGATCAAAGTAGCCGAGCTCGTTTGGACATTGCGAG
AGTATATACCCAGCTGAGTTTTTTTTACTGGGCTATTCGTTCAGCCATTA
TATACCGGTGGTGGGCTACAAAGTGTGTGTGTGCTCGCGGGGAGCGACCA
TGATTAAAACCAGCGCGGTCCAAAAGAGAAGGCATGCCCGCCTGCGCTCG
TAGTTCCGAAATAATGACAAGGGTGAACAGTGTCGTGAAACGGAGCAAGG
ACTAGCAGGTCGCGCTCTGGACACGCACACGTGTAGAGGGTTCCATGTGC
CGCTGTAGGTCAGTGTTGTGTAGCAGGGTGTGGGTGGGTGTGGGTGTTGT
GTGCCTCTCTCTCCTCTGTTCTACTCCTCCGCTACGGCTGTATCTTTTTC
TGCGGCACGAAACGTATTTTCGCACCGAATGGGGCGCGCACACGCATGTC
TTTCATCTTTCTCCTCGCTTGTCAGCTGCCCGGGTGTGCAGCGGTCGGAG
AGGTCAGCAGCCTCTAGTGTGACTGCTGTCTTTCGCTCGATCCATCTCTC
GCGTGAAACACAACCAACCCCCATGCACGCACCTCTGTTGTCGCACCCGT
CCATGTTCAGGTATTCGCCGCGACGGACGTTGTTCCTGCTTCCAAAGGGC
AGGCGCCGCGGCCACGAGGGCAGTTGGAAAGGGCACTGCAAGGGGCGTCG
TTCGCGGCAGCAACAGGGTTTGCGGGAGCGTCCAGTGTGCTAGCAGAGTA
CATTGATCCGGACGATGTGAGATGCTACTTTCTAATCGCGTAGAGACAAC
AGGGCGATCGATTGCAATGGTCCTTCTTATTTCGTCCACTGTAACAGCCG
TCAACTTGTCAGAGAGTTCAGCAGTTATTGGAATTCTAAGCTGCGGAGAG
TAGGTTGGAGCGCGCAAGTATTTCGTTGTCCCTCCACCCAGCAGGTCTGC
ATCGCAATTCATAGGTTAGCAAATCCTCTGGAGCCAGAGTTATTTTTCTA
GCTCCGAGGAGCAAGTGCTCACGCCCGCGAGAAGCTTGTCGCCTCCCGCT
CAAGCCTGTATTGCTTGTCGGCGAAGTACGACCGCAAGATTGGACACCTA
GTGCGGCGACTTGTGCCTGACTACCAATCGCTTCGATGCATGCGTACCCA
AAACGTGCATGTGTGACAGGTCGGTGAAGTCGTCAGTAGCGACCTTCCGC
CGATGTGGGTGCCGCTCGCAGTCGGCTTCGTTCTCACGCTAGGCATCGGC
CTGCTTCAGGGCAGCCTGGGGGACGTTATGAACGACGAGGCCAAGCTCGG
GGCATTGTCAGGCGCGAGAGCTGCCAAGCAAAGTGCCCGCGACCGAGACA
TGTTCAAGAAGAAAGGCCCAAAATAGTCGGCTATGAGCCAACATTGTGGG
GAAAGAGATAGGTAGATAAACTGGCATGGTTCAAATGGGGGCATGGGGGC
CGTGTCTGTAAACCCCCTTGTAGATTTTGGATGTGTTTGAGACTCTACTG
TAGTGCGTTGTTGAGATTTGTCTCGGCGCGACAATGGCTGTGGCCGGCGT
GATTTGTCCAGGCTCTCCAGAGAGTGGACGCAGGCGAAATTCGGTCGGGG
GGTGTTTTTTGTGCCTATTGAAAGTTGAGGAAGAGCTGTATACATCGATC
CTTTTTGCGGAAGCCAGGTAACCAGGACTTTTCTCCCTTTGTACAGACAT
TCAACACCGGGAAGAGATCTGGAAAGCTGACGGATAGATTTCCTTCGGTC
CGGGGGTTTTGCCAAGAACGGTCCACGAAATGCAGCAAACATCCGGGATG
GATCTTTAATATAGGAAAGGGTGTTGATGAAAGCACACCTAGCTTACACA
TTGTAAGTGCCTTCGGCCGCACCCTTGGCATTTCTCGCCGCATATGTATC
ACGAGAGAAAGCGCCCCCCCCCGTTGGCAGACCGTTAAACTACCGGGATA
GGGTTGGCAGACTGTGACTCAGTGGAGATGGGGT

Coding sequence (CDS) from alignment at Scaffold_510:29421..34054+

>EsuBft98_24a-0001 ID=EsuBft98_24a-0001|Name=EsuBft98_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=513bp|location=Sequence derived from alignment at Scaffold_510:29421..34054+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTTGGTATGAGGCGGGCGTCTTTGGTCATGCTGGCGATTGTCTT
GCGGCGATCGGCGCAAGCTTTCACGGTCCCAAGCGTGATGACCATCAGAC
CTTCGCAGCAGGCGCAAGCGCAGCAACAACATCCGCCCGCTTCTGGACAG
GTATTCGCCGCGACGGACGTTGTTCCTGCTTCCAAAGGGCAGGCGCCGCG
GCCACGAGGGCAGTTGGAAAGGGCACTGCAAGGGGCGTCGTTCGCGGCAG
CAACAGGGTTTGCGGGAGCGTCCAGTGTGCTAGCAGAGTACATTGATCCG
GACGATGTCGGTGAAGTCGTCAGTAGCGACCTTCCGCCGATGTGGGTGCC
GCTCGCAGTCGGCTTCGTTCTCACGCTAGGCATCGGCCTGCTTCAGGGCA
GCCTGGGGGACGTTATGAACGACGAGGCCAAGCTCGGGGCATTGTCAGGC
GCGAGAGCTGCCAAGCAAAGTGCCCGCGACCGAGACATGTTCAAGAAGAA
AGGCCCAAAATAG