EsuBft91_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft91_14a-0001
Unique NameEsuBft91_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_509contigScaffold_509:180046..184046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FNH6
ProteomeIdEsuBft91_14
Protein domainsTMhelix
Protein domainsPTHR24003
Protein domainsIPR020846
Protein domainsIPR011701
Protein domainsG3DSA
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length120
Hectar predicted targeting categoryother localisation
Evalue1.24e-39
EggNOG OGsKOG2816@1|root,KOG2816@2759|Eukaryota
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-01_005420.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionfolate import across plasma membrane
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0055085
GO0016021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft91_14aEsuBft91_14aEctocarpus subulatus male Bft15bgeneScaffold_509 180046..184046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft91_14a-0001EsuBft91_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_509 180205..183988 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft91_14a-0001-exonagat-exon-84568Ectocarpus subulatus male Bft15bexonScaffold_509 180046..180372 +
EsuBft91_14a-0001-exonEsuBft91_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_509 181874..181927 +
EsuBft91_14a-0001-exonagat-exon-84566Ectocarpus subulatus male Bft15bexonScaffold_509 182472..182710 +
EsuBft91_14a-0001-exonagat-exon-84567Ectocarpus subulatus male Bft15bexonScaffold_509 183158..183652 +
EsuBft91_14a-0001-exonagat-exon-84569Ectocarpus subulatus male Bft15bexonScaffold_509 183958..184046 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft91_14a-0001-exonagat-five_prime_utr-14980Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_509 180046..180204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft91_14a-0001-cdsEsuBft91_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_509 180205..180372 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft91_14a-0001-exonagat-three_prime_utr-23042Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_509 183989..184046 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft91_14a-0001 ID=EsuBft91_14a-0001|Name=EsuBft91_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1204bp|location=Sequence derived from alignment at Scaffold_509:180046..184046+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTAACCCTTTGTCAGTCGGGGCGGCCGGCGCGTGTGCCACTGGACCGGCC
AACTTTGCTGTGCACAGCAGTTTTATCGGTGCTTTGCAATCGCAGGCCGG
CGTGTCTCTCAACCATCCTCGACTGCTTTCAAGCTTCGATCATCGAGACG
AGGAAGATTATGGTGGACGTTGACCCTGAGTCCTCTGAGACAGCGCTGCT
CCCCGGCGGATTTCAAGGGCGTCCCAACAGAGATGATGATGCTGCGGCGG
CTGTGCACAGGAAGCTTACCGCCTGCATCTTGCTGTACACAATCGGCGCA
AGCATGATGACGCAAGTCTACCCGAAGATCATCCTGCTTTCGTCTGGAGG
AGACGACGGGGAAGCATCCAAGTACAGAGGGTGGTTGGCCGCTGGGGTAA
GCGTCATCCAGCTCCTTTTCGTCCCCGCCATCAGCGGATCGAGCGACGTG
GTGGGCCGGAAGGTGGTGGTTTGCTTCGCGCAGGTGCTGCACGCCAGCTC
GGTCCTCGCGCTCGCGGCGATGGCGGACTCGTTGGTGTGGGCAACCGTGT
GCAGGCTGGCGACGAGCGTGTGCATCGTGATCCTGCCGGTCAGTCAGGCC
ATCATGATCGACCTCTCCCCCGACAGAGGCAAGGGCGCCACCCACGGCTT
GGGCATCGCCTTCGGCGCCTGCGCCCTAGGATTCAGCGCCGGCGACATCA
TCGGCGGCTCTCTCGCCGAGCACCACCGCGGCGCGGCGTGCCTCGTGAGT
GCAGCCTTCGCCACGGCCTCTCTCCTGTCCCTGATGCTCTTCGGGTGGAG
AGAGACGGCGCCGCCCCTGGTCGGGGAGGGGTGGCAACGGTGGCTGTGGT
GGCGGATGGAGGAGCAGGAGAGGGTTGACGATGCCGTGGTCGGGATAAAT
GAAGACGATGTGGGCGCTAATGGGGGAAACGGCGGAAGGGACATTGTTGC
TGTGGTGCAGGGCGGTGATGCCGTTGGCGCCTCCACGGCGAGTGTTGACA
GTTTCGTCTGGGATGACGATAGGAGAAAAGGGGCGGGGTGCAGGGGGAGG
GCGAGGCGGTCAGGAAGAGAGCAGCTGAACCCACTTTCCGTCCTCAAAGT
GTTCTTGGAAACCAGACGGACATTGAGGAAACGTGGGCCTCTGTAAGAGA
TGACCTTCACAAACAAATTTTGTTTGGACCGCGTGCATTCGCTTCCTCAT
TTGT
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protein sequence of EsuBft91_14a-0001

>EsuBft91_14 ID=EsuBft91_14|Name=EsuBft91_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=328bp
MVDVDPESSETALLPGGFQGRPNRDDDAAAAVHRKLTACILLYTIGASMM
TQVYPKIILLSSGGDDGEASKYRGWLAAGVSVIQLLFVPAISGSSDVVGR
KVVVCFAQVLHASSVLALAAMADSLVWATVCRLATSVCIVILPVSQAIMI
DLSPDRGKGATHGLGIAFGACALGFSAGDIIGGSLAEHHRGAACLVSAAF
ATASLLSLMLFGWRETAPPLVGEGWQRWLWWRMEEQERVDDAVVGINEDD
VGANGGNGGRDIVAVVQGGDAVGASTASVDSFVWDDDRRKGAGCRGRARR
SGREQLNPLSVLKVFLETRRTLRKRGPL
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mRNA from alignment at Scaffold_509:180046..184046+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft91_14a-0001 ID=EsuBft91_14a-0001|Name=EsuBft91_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4001bp|location=Sequence derived from alignment at Scaffold_509:180046..184046+ (Ectocarpus subulatus male Bft15b)
GTAACCCTTTGTCAGTCGGGGCGGCCGGCGCGTGTGCCACTGGACCGGCC
AACTTTGCTGTGCACAGCAGTTTTATCGGTGCTTTGCAATCGCAGGCCGG
CGTGTCTCTCAACCATCCTCGACTGCTTTCAAGCTTCGATCATCGAGACG
AGGAAGATTATGGTGGACGTTGACCCTGAGTCCTCTGAGACAGCGCTGCT
CCCCGGCGGATTTCAAGGGCGTCCCAACAGAGATGATGATGCTGCGGCGG
CTGTGCACAGGAAGCTTACCGCCTGCATCTTGCTGTACACAATCGGCGCA
AGCATGATGACGCAAGTCTACCCGAAGGTGCGCATAAGACGTTGCAGTAC
CTGCCCTACCTCAGAACGGCTGCAACGTGTGTACAACGGTGGTGGGTCGC
CGGTGCAGGCTGCGGGTTTTGTGCAGTTGGTCAAGTTTTGAAAGGCGGCA
ACTCTTCGGCGTCGGTACTTTGCTACACTGCTGAAAAAACATGTTTGGAG
CAAGTGGGGTGATTTTGTTTTCTTGAGGAATGAATCGCACAGACGGTGCA
CACATTCGGTGTCGGGTACCACCACTGAAATGTGCCGACAGCAGTACTAA
CCTGTTGTAGCATACGCCGATGGATGCACACTCCTGTGCTGCTGCTGGAC
GAGGTGCTGCTGTTGCAACATAGTTGCGTTCTCCCTGCAAATAGCAAGGA
GAGCTGTTGAGACGCCCTTATTGGTTAGTACCTGTGCATATTAATAGCGC
TTTGAGCCCGATGCCCCACCTGTACCGGTGAGTACACGACGCGCGGTGGG
TGGAATATCTCTTGCAGGGGTAAGGGTTAGGGGTTAGGGTGCGACAGAAA
ACGGTGAGGGCTACACTACTGTAACTCGAGGAGCCCGGTGGCGGCATTCT
TGGCTTGCGCCGCCAGAAAATGGTACATACTCGATGGTTCGTCATGACCA
ATCAGCGTTGGGCCTCGAGGTCAATTCCTGGTGTAACGTTTTGTGTCATC
CAACACCCCCGGCATACCGTCTCCTGTCGTTTGCTCAAACAAAGGTATCG
CTGGGCGTGTACAGCGCAATGTGTGCACGGAGCCAACACTTCATTGGTAG
TATGCATAGACTTACTACGGACAGAAATTCGGTGTTGTTGCCAAATTTCT
TGACATGAAAGAAAAAGAGCGAACGACGCCTGCTGATTTGGATGTTGGCG
ACAGCCATCCCTGGGTGCAAGTGCAAAGCTGCCTTCCCACCTGGGTCGCC
TTTTATTCATAGCCCCATGTATCGAGGGTTCATTTGATAGGGCTTAATAT
AGACAACAGGCGGGGGAGCGTGGTAAAACGGGGCACGAAAATGAGGTTTT
CAAGATATTCCTTTAGAGGGAAAGCGAGCCTTTCTAACACAAGCCCTACA
CAGGTTGCCCGGTGCCTCCTTTCATCGGTGGGCTAGGTACTTCTTCCGCG
CTTGCCCCTTAAGAGTAGCGCTTTCCACCAAGGGTAGATAAATGCGGCGC
AACTTTGCTGTTGAACCCACGGCGTAATCGCCCCGCGATTCGACCTATTC
ATTACCCGATACTCCTTCGCTCTACAAAGCACCTATACTAGACTAGAGTT
GTCCCCGTCTTCCCCGGCACCCTCCTTGTCGAATACTTTAAAGGAGGAGG
TAACCATGCCATTCTTCGTGAGGTCAGGCAGGTGAAGTAGATGGGGACAA
GAAATGTCCCTAAAAGCCGATCTAGCCCTTGAGGGGATTTTGCCAACAGC
AAGAGCGCCTGTCCCCTCGTTGTCTCATGGTACTTCTTCATCGTTCTTTC
ACGCTCACCCCGCTGAATTGACGTGCAGATCATCCTGCTTTCGTCTGGAG
GAGACGACGGGGAAGCATCCAAGTACAGAGGGGTAAGTGGTCATGTTGCT
GCGGTCAGACGCACCGACTGGTGTTTGCATGTTGGACGCCATGTGGACGT
GTTGTTTGATTGCGTTGGCCGGGTAAGATGGTGCCATAGATGTTTTGTAT
CATCGCACGATACGAAGCACACGCTGTGCTGCCCCGCGCAAGGTGCTGAA
GATATCAGGGCGTGGACGACAAAATCACGTCGTTGACTTTCGGGTGTAGT
GGATTCTGGTTTACTGACATTTTCTAGGTTTACCTCGTTGCAGCGTGGTG
GGAGTATCCGCACCTCACACTGTTTTTGTAGGACTGCGTCCTATCTTCAG
CAGGTTCGGGGGCTTACAAACATCACGAAGGCTTTAAAATAGTGGGTTGC
GTTTCGCCCTTTTGGTCGCGTGGACTGAGCCAACGACTTCCTTTGTCCTC
GCCTTGCTCCGTGACGTTCCGCCTTTACGTCCCGTCTCTCTCTTCCCCCC
CCGGAAAAAACAAAAAACGACACAAAACAATAAACGCGAAATAACATACG
CGATGTATAAACGGCACACTAAATAGTGGTTGGCCGCTGGGGTAAGCGTC
ATCCAGCTCCTTTTCGTCCCCGCCATCAGCGGATCGAGCGACGTGGTGGG
CCGGAAGGTGGTGGTTTGCTTCGCGCAGGTGCTGCACGCCAGCTCGGTCC
TCGCGCTCGCGGCGATGGCGGACTCGTTGGTGTGGGCAACCGTGTGCAGG
CTGGCGACGAGCGTGTGCATCGTGATCCTGCCGGTCAGTCAGGCCATCAT
GATCGACCTCTCCCCGTGAGTGCTGCTCACGAAGAAGCAAAGACCAACAT
TCTTGATGTTGTCAGTTTTTTTTTTTTCTTTTGCGCTTGCTTCTTGTGCA
GGCGTTCTTGGTGTGTGCCATAACCACCAACGTGGTGTTATTGTTGTGTT
TCGTCCGCCGCGTCCCCTGTCTTTGTCGTCGTTTCCGTCGCACGCCTTTT
TTATCCCTCTCTCGTTTATTTTTTTTTGTAGAAGCAGTCTAGAAAAGCAG
GCTCATTTCGTGTTCCTCACGATACATGCAGCCGAGATTCGTCTTTGCTC
GTGCGGCGTTGCTCACACGCCTCTCGCCTAAAATTCCCACGGCAGCATGT
CATATCCCACCATACCAACCGATAATAATGGCCAATTTCCTCCTCCTCGC
CCCCCCTGCTGCTGCCAACTAACCCTCGTCCTGCTGCTCCTGCTGCTAAA
CCTCCTCTACAGCGACAGAGGCAAGGGCGCCACCCACGGCTTGGGCATCG
CCTTCGGCGCCTGCGCCCTAGGATTCAGCGCCGGCGACATCATCGGCGGC
TCTCTCGCCGAGCACCACCGCGGCGCGGCGTGCCTCGTGAGTGCAGCCTT
CGCCACGGCCTCTCTCCTGTCCCTGATGCTCTTCGGGTGGAGAGAGACGG
CGCCGCCCCTGGTCGGGGAGGGGTGGCAACGGTGGCTGTGGTGGCGGATG
GAGGAGCAGGAGAGGGTTGACGATGCCGTGGTCGGGATAAATGAAGACGA
TGTGGGCGCTAATGGGGGAAACGGCGGAAGGGACATTGTTGCTGTGGTGC
AGGGCGGTGATGCCGTTGGCGCCTCCACGGCGAGTGTTGACAGTTTCGTC
TGGGATGACGATAGGAGAAAAGGGGCGGGGTGCAGGGGGAGGGCGAGGCG
GTCAGGAAGAGAGCAGCTGAACCCACTTTCCGTCCTCAAAGTGTTCTTGG
AAACCAGGTGCGTCGTGCTCCGTGCGTGCGTCATCCCACCGCCCTGCCTT
TGCGTCCGTAGCCTCTTGTTGTGGTGACCGTGCTACACGGCGATGGCGTC
ATTTTTTTTATTGCCAACACACAACGGCAACACTCGGCAACGTTAGCAAG
ATGAAACCTTTGTGTGAGCGGGGAGCAGTGTAAACCTCGTTCCCTCACCC
CACCTTCTCTTGACCGTCCAACGTTCGCATACGTGGTCAACAATCGTCTC
CACGTGGCACAATATTGTTTTCGGTGTCACCTTTCGTGTAGAAACGTATC
CACCCTCGACAGACGGACATTGAGGAAACGTGGGCCTCTGTAAGAGATGA
CCTTCACAAACAAATTTTGTTTGGACCGCGTGCATTCGCTTCCTCATTTG
T
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Coding sequence (CDS) from alignment at Scaffold_509:180046..184046+

>EsuBft91_14a-0001 ID=EsuBft91_14a-0001|Name=EsuBft91_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=987bp|location=Sequence derived from alignment at Scaffold_509:180046..184046+ (Ectocarpus subulatus male Bft15b)
ATGGTGGACGTTGACCCTGAGTCCTCTGAGACAGCGCTGCTCCCCGGCGG
ATTTCAAGGGCGTCCCAACAGAGATGATGATGCTGCGGCGGCTGTGCACA
GGAAGCTTACCGCCTGCATCTTGCTGTACACAATCGGCGCAAGCATGATG
ACGCAAGTCTACCCGAAGATCATCCTGCTTTCGTCTGGAGGAGACGACGG
GGAAGCATCCAAGTACAGAGGGTGGTTGGCCGCTGGGGTAAGCGTCATCC
AGCTCCTTTTCGTCCCCGCCATCAGCGGATCGAGCGACGTGGTGGGCCGG
AAGGTGGTGGTTTGCTTCGCGCAGGTGCTGCACGCCAGCTCGGTCCTCGC
GCTCGCGGCGATGGCGGACTCGTTGGTGTGGGCAACCGTGTGCAGGCTGG
CGACGAGCGTGTGCATCGTGATCCTGCCGGTCAGTCAGGCCATCATGATC
GACCTCTCCCCCGACAGAGGCAAGGGCGCCACCCACGGCTTGGGCATCGC
CTTCGGCGCCTGCGCCCTAGGATTCAGCGCCGGCGACATCATCGGCGGCT
CTCTCGCCGAGCACCACCGCGGCGCGGCGTGCCTCGTGAGTGCAGCCTTC
GCCACGGCCTCTCTCCTGTCCCTGATGCTCTTCGGGTGGAGAGAGACGGC
GCCGCCCCTGGTCGGGGAGGGGTGGCAACGGTGGCTGTGGTGGCGGATGG
AGGAGCAGGAGAGGGTTGACGATGCCGTGGTCGGGATAAATGAAGACGAT
GTGGGCGCTAATGGGGGAAACGGCGGAAGGGACATTGTTGCTGTGGTGCA
GGGCGGTGATGCCGTTGGCGCCTCCACGGCGAGTGTTGACAGTTTCGTCT
GGGATGACGATAGGAGAAAAGGGGCGGGGTGCAGGGGGAGGGCGAGGCGG
TCAGGAAGAGAGCAGCTGAACCCACTTTCCGTCCTCAAAGTGTTCTTGGA
AACCAGACGGACATTGAGGAAACGTGGGCCTCTGTAA
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