EsuBft989_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft989_8a-0001
Unique Name	EsuBft989_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_504	contig	Scaffold_504:204944..206974 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft989_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	182
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft989_8a	EsuBft989_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_504 204944..206974 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft989_8a-0001-exon	agat-exon-71908	Ectocarpus subulatus male Bft15b	exon	Scaffold_504 204944..205889 -
EsuBft989_8a-0001-exon	EsuBft989_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_504 206096..206974 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft989_8a-0001-exon	agat-three_prime_utr-23826	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_504 204944..205889 -
EsuBft989_8a-0001-exon	agat-three_prime_utr-23827	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_504 206096..206779 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft989_8a-0001-cds	EsuBft989_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_504 206780..206974 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft989_8a-0001	EsuBft989_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_504 206780..206974 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_504:204944..206974-
coding sequence from alignment at Scaffold_504:204944..206974-

spliced messenger RNA

>EsuBft989_8a-0001 ID=EsuBft989_8a-0001|Name=EsuBft989_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1825bp|location=Sequence derived from alignment at Scaffold_504:204944..206974- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATGGTGGCTGTTGATGAACATGTGTAGCACACATGTGGAGCGACA
AACAACTGATCCGAAACGGTGCGCACCCCCCCTCTTCCTCACGACGGCCC
GGCCCAGCCTATGGTACAACTTGTTCCAGTTCATGACTGGACCGCGACGC
TGCACGGCGGCGATCCTTACCATCCCCAGCTCCGACTTCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCCGGCGGCAGACGTTTACGTCCAGGATGATGATCTTGAAGCATACCT
CAACGACATGTTTTAATGTTTTGCGGGCGAGGGGCGGGGCCATGGCCGTG
TTGATGGTATATGGCAGGTGCCCATGGAGAGTGCATCTCGAATAGCATCG
GTGCATCCATCTTGTCATGAAACCTCCACTATTTGCGGGAGGTGTTGGCG
TGGGCCGGCTGTGAGCTACGAATCCGTGTTTCATAAACCTTACCACTGGT
ACACGTTAAACGAGAAGTTGACAAGTCATGTTTTTGTGGCCGGGGGATTG
GATGGATAATTAAATTAGCGTGATGGGAGTGGTGCACGTGGGTAGCTGTC
GTCGCTGCATCGAGATTGGTATGGCTCTTGCCTCGCGTCTTGACATTTCC
GTATCTCATGCATGGTCCATCGAAGGAAAAGTCTTCGGGGCAGTTTTTCC
CGATGTTGAAGTTTCTCACAAAGTACCTCAATTTTTTTTGGTTTTCAGTT
TATTCCATATCAAGAGAATATTCATCGTGGCAGTGTTCATTGGGTGTATG
TTACTCAGAGTCCTTCGACTTTTTTTGTTTTAATTTATTCCATCAAGAGA
AAATTCATCGCGGTGGTAAGTTACTTAGAAGTCCTTCAACTTTTTTTTTT
TAATTTATTCCATCGAGAGAAAATTCATCGTGGCAGTTTTTCTTGGGCGG
TAAGTTACTCAAAGAGTCCTTCAATTTCTTTTGTTCTTAATTCTTTTCCA
TCTAGAGAATTTCATCGCGTTGGTTTTTAATTGTTCCATCGAAAGAATAA
TTCTTCGTCGCAGTTTTATAGATTTTTATCTTTTCACGATGGAATCAGAT
AATTTGGGGGAGAAGGTTTGGCATTCATTGCCAGCTGGCTATGCTGGGCA
CATGGAGCGTGTTCGTTCGTGTTATGTCGAAGAAGCATTATATATTGCCT
GCAGCGTTCGGCCTCTGTACGTGCAATCGGTGACGTCATCATGTACCCTG
TAGGGGAGGTATATATTGGGTGCCTTGAGGTCCCCTCATAGTAGCAGTAT
CATGCGGTACGTTGTTTGTTGATGGAATTGACGCGCCGGAGTTGTACATG
TTACGAAGGGATGGGGAAGCAAGGAAAGGCACGGATCAGGGCGGGGGGCG
GGGGGGTGTCAAAAGGGACATATATGGCGTATATGAGCTTGAGCGTGTTT
GTACCTCTAGGAGCACTACAGTACATGCTGCTCCAAGGGACGACAAGGGA
AAAACAAAAAAAAAGACAAATGAAACAAAAAATACAAAGAGAAAATAACC
AAACAAATAAATTTCGAAAGGAAAATATCCTAATTTTCGGCCCCGTCAGT
ACCACTTGGCTGACACGGTCTCCACAGGGTTTCTCCAGGGTGTGCACCCC
GCCAGGGTCCCTGAGGGGCAGGGTACGTACAGGGTGTGGGATCAGTACCC
TCGCAGGGTACCCACCCTGCCATTGGGTCAAGCCTGCAGCGTAGTCTTTC
CAGGGTGACCTTGACAGGGTGAAATCTCCCCACCCTGGCAGGGTAGCCGA
ATGGCTACGTGTGATGCCATCTTAT

protein sequence of EsuBft989_8a-0001

>EsuBft989_8 ID=EsuBft989_8|Name=EsuBft989_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=65bp
MSWWLLMNMCSTHVERQTTDPKRCAPPLFLTTARPSLWYNLFQFMTGPRR
CTAAILTIPSSDFXX

mRNA from alignment at Scaffold_504:204944..206974-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft989_8a-0001 ID=EsuBft989_8a-0001|Name=EsuBft989_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2031bp|location=Sequence derived from alignment at Scaffold_504:204944..206974- (Ectocarpus subulatus male Bft15b)
ATGTCATGGTGGCTGTTGATGAACATGTGTAGCACACATGTGGAGCGACA
AACAACTGATCCGAAACGGTGCGCACCCCCCCTCTTCCTCACGACGGCCC
GGCCCAGCCTATGGTACAACTTGTTCCAGTTCATGACTGGACCGCGACGC
TGCACGGCGGCGATCCTTACCATCCCCAGCTCCGACTTCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCCGGCGGCAGACGTTTACGTCCAGGATGATGATCTTGAAGCATACCT
CAACGACATGTTTTAATGTTTTGCGGGCGAGGGGCGGGGCCATGGCCGTG
TTGATGGTATATGGCAGGTGCCCATGGAGAGTGCATCTCGAATAGCATCG
GTGCATCCATCTTGTCATGAAACCTCCACTATTTGCGGGAGGTGTTGGCG
TGGGCCGGCTGTGAGCTACGAATCCGTGTTTCATAAACCTTACCACTGGT
ACACGTTAAACGAGAAGTTGACAAGTCATGTTTTTGTGGCCGGGGGATTG
GATGGATAATTAAATTAGCGTGATGGGAGTGGTGCACGTGGGTAGCTGTC
GTCGCTGCATCGAGATTGGTATGGCTCTTGCCTCGCGTCTTGACATTTCC
GTATCTCATGCATGGTCCATCGAAGGAAAAGTCTTCGGGGCAGTTTTTCC
CGATGTTGAAGTTTCTCACAAAGTACCTCAATTTTTTTTGGTTTTCAGTT
TATTCCATATCAAGAGAATATTCATCGTGGCAGTGTTCATTGGGTGTATG
TTACTCAGAGTCCTTCGACTTTTTTTGTTTTAATTTATTCCATCAAGAGA
AAATTCATCGCGGTGGTAAGTTACTTAGAGTCCTTCAACTTTTTTTTTTT
AATTTATTTCATCGAGAGAAAATTCATCGCGGTGGTAAGTTACTTAGAGT
CCTTCAACTTTTTTTTTTTAATTTATTTCATCGAGAGAAAATTCATCGCG
GTGGTAAGTTACTTAGAGTCCTTCAACTTTTTTTTTTTAATTTATTTCAT
CGAGAGAAAATTCATCGCGGTGGTAAGTTACTTAGAGTCCTTCAACTTTT
TTTTTTTAATTTATTCCATCGAGAGAAAATTCATCGTGGCAGTTTTTCTT
GGGCGGTAAGTTACTCAAAGAGTCCTTCAATTTCTTTTGTTCTTAATTCT
TTTCCATCTAGAGAATTTCATCGCGTTGGTTTTTAATTGTTCCATCGAAA
GAATAATTCTTCGTCGCAGTTTTATAGATTTTTATCTTTTCACGATGGAA
TCAGATAATTTGGGGGAGAAGGTTTGGCATTCATTGCCAGCTGGCTATGC
TGGGCACATGGAGCGTGTTCGTTCGTGTTATGTCGAAGAAGCATTATATA
TTGCCTGCAGCGTTCGGCCTCTGTACGTGCAATCGGTGACGTCATCATGT
ACCCTGTAGGGGAGGTATATATTGGGTGCCTTGAGGTCCCCTCATAGTAG
CAGTATCATGCGGTACGTTGTTTGTTGATGGAATTGACGCGCCGGAGTTG
TACATGTTACGAAGGGATGGGGAAGCAAGGAAAGGCACGGATCAGGGCGG
GGGGCGGGGGGGTGTCAAAAGGGACATATATGGCGTATATGAGCTTGAGC
GTGTTTGTACCTCTAGGAGCACTACAGTACATGCTGCTCCAAGGGACGAC
AAGGGAAAAACAAAAAAAAAGACAAATGAAACAAAAAATACAAAGAGAAA
ATAACCAAACAAATAAATTTCGAAAGGAAAATATCCTAATTTTCGGCCCC
GTCAGTACCACTTGGCTGACACGGTCTCCACAGGGTTTCTCCAGGGTGTG
CACCCCGCCAGGGTCCCTGAGGGGCAGGGTACGTACAGGGTGTGGGATCA
GTACCCTCGCAGGGTACCCACCCTGCCATTGGGTCAAGCCTGCAGCGTAG
TCTTTCCAGGGTGACCTTGACAGGGTGAAATCTCCCCACCCTGGCAGGGT
AGCCGAATGGCTACGTGTGATGCCATCTTAT

Coding sequence (CDS) from alignment at Scaffold_504:204944..206974-

>EsuBft989_8a-0001 ID=EsuBft989_8a-0001|Name=EsuBft989_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=195bp|location=Sequence derived from alignment at Scaffold_504:204944..206974- (Ectocarpus subulatus male Bft15b)
ATGTCATGGTGGCTGTTGATGAACATGTGTAGCACACATGTGGAGCGACA
AACAACTGATCCGAAACGGTGCGCACCCCCCCTCTTCCTCACGACGGCCC
GGCCCAGCCTATGGTACAACTTGTTCCAGTTCATGACTGGACCGCGACGC
TGCACGGCGGCGATCCTTACCATCCCCAGCTCCGACTTCCNNNNN