EsuBft1096_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1096_8a-0001
Unique NameEsuBft1096_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:313825..314230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_009574-tr
ProteomeIdEsuBft1096_8
Protein domainsSSF56672
Protein domainsPTHR10178
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Notetransposon ty3-i gag-pol polyprotein os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:ty3b-i pe:3 sv:2 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length406
Hectar predicted targeting categoryother localisation
Evalue1.09e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,39Z2B@33154|Opisthokonta,3BIIP@33208|Metazoa,3D489@33213|Bilateria
Date last modified2016-06-13
Date creation2016-06-13
DescriptionSCAN domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_8aEsuBft1096_8aEctocarpus subulatus male Bft15bgeneScaffold_501 313825..314230 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_8a-0001-exonEsuBft1096_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 313825..314230 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_8a-0001-exonagat-three_prime_utr-939Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 313825..313876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_8a-0001-cdsEsuBft1096_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 313877..314230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1096_8a-0001EsuBft1096_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 313877..314230 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1096_8a-0001 ID=EsuBft1096_8a-0001|Name=EsuBft1096_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=406bp|location=Sequence derived from alignment at Scaffold_501:313825..314230- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGAACTCGGCCGCTGCACCATTGCAGAAGCCACGTTCCCCGTGCC
GCCAGGCACGCGTCCTGTCGATCGTCCGCCGTACCGTCCGAATCCCCGCG
TAGCCACTGTCTCCGACAAATGTGTCGCCGAAATGCTCGAATGGGGTATC
ATTGAAAAACGGCCCAGCGCATGGGGAAGCCCATGCACACTTGTCGCTAA
AAAGAACGGCAGTCCCCGTTTCTGCGTCGACTACCGCCACACCCTCAACC
GTCACATCGTCCGTAAAACCTGGCCCATGCCTAACCTCGAGTCCTGCCTG
GATGCCGGCCAAGCTCTCTACATCATCGTCGCCGACATCCTCAGCGCCTT
CTGACAGATCCCCGTGGTAGAGGAACACGTCGACCGTACTGCATTGGTCA
CCCCTA
back to top

protein sequence of EsuBft1096_8a-0001

>EsuBft1096_8 ID=EsuBft1096_8|Name=EsuBft1096_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=117bp
MSELGRCTIAEATFPVPPGTRPVDRPPYRPNPRVATVSDKCVAEMLEWGI
IEKRPSAWGSPCTLVAKKNGSPRFCVDYRHTLNRHIVRKTWPMPNLESCL
DAGQALYIIVADILSAF
back to top

mRNA from alignment at Scaffold_501:313825..314230-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1096_8a-0001 ID=EsuBft1096_8a-0001|Name=EsuBft1096_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=406bp|location=Sequence derived from alignment at Scaffold_501:313825..314230- (Ectocarpus subulatus male Bft15b)
ATGTCCGAACTCGGCCGCTGCACCATTGCAGAAGCCACGTTCCCCGTGCC
GCCAGGCACGCGTCCTGTCGATCGTCCGCCGTACCGTCCGAATCCCCGCG
TAGCCACTGTCTCCGACAAATGTGTCGCCGAAATGCTCGAATGGGGTATC
ATTGAAAAACGGCCCAGCGCATGGGGAAGCCCATGCACACTTGTCGCTAA
AAAGAACGGCAGTCCCCGTTTCTGCGTCGACTACCGCCACACCCTCAACC
GTCACATCGTCCGTAAAACCTGGCCCATGCCTAACCTCGAGTCCTGCCTG
GATGCCGGCCAAGCTCTCTACATCATCGTCGCCGACATCCTCAGCGCCTT
CTGACAGATCCCCGTGGTAGAGGAACACGTCGACCGTACTGCATTGGTCA
CCCCTA
back to top

Coding sequence (CDS) from alignment at Scaffold_501:313825..314230-

>EsuBft1096_8a-0001 ID=EsuBft1096_8a-0001|Name=EsuBft1096_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=354bp|location=Sequence derived from alignment at Scaffold_501:313825..314230- (Ectocarpus subulatus male Bft15b)
ATGTCCGAACTCGGCCGCTGCACCATTGCAGAAGCCACGTTCCCCGTGCC
GCCAGGCACGCGTCCTGTCGATCGTCCGCCGTACCGTCCGAATCCCCGCG
TAGCCACTGTCTCCGACAAATGTGTCGCCGAAATGCTCGAATGGGGTATC
ATTGAAAAACGGCCCAGCGCATGGGGAAGCCCATGCACACTTGTCGCTAA
AAAGAACGGCAGTCCCCGTTTCTGCGTCGACTACCGCCACACCCTCAACC
GTCACATCGTCCGTAAAACCTGGCCCATGCCTAACCTCGAGTCCTGCCTG
GATGCCGGCCAAGCTCTCTACATCATCGTCGCCGACATCCTCAGCGCCTT
CTGA
back to top